data_5SI
# 
_chem_comp.id                                    5SI 
_chem_comp.name                                  "2-{2-deoxy-5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-6-methylisoquinoline-1(2H)-thione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H20 N O12 P3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-07-29 
_chem_comp.pdbx_modified_date                    2012-06-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        531.305 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5SI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3SV3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5SI N1     N1   N 0 1 N N N 14.809 -12.328 -34.489 -4.055 -0.549 0.129  N1   5SI 1  
5SI C2     C2   C 0 1 N N N 14.045 -13.233 -33.849 -4.135 -0.478 -1.233 C2   5SI 2  
5SI C3     C3   C 0 1 N N N 14.288 -14.608 -33.903 -4.972 0.364  -1.861 C3   5SI 3  
5SI C4     C4   C 0 1 Y N N 15.360 -15.122 -34.626 -5.836 1.242  -1.071 C4   5SI 4  
5SI C5     C5   C 0 1 Y N N 16.251 -14.183 -35.341 -5.757 1.171  0.340  C5   5SI 5  
5SI C6     C6   C 0 1 N N N 15.936 -12.729 -35.240 -4.816 0.218  0.935  C6   5SI 6  
5SI PA     PA   P 0 1 N N N 11.054 -11.232 -30.551 2.523  -1.542 -0.867 PA   5SI 7  
5SI PB     PB   P 0 1 N N N 13.591 -11.119 -29.329 5.001  -0.081 -0.153 PB   5SI 8  
5SI PG     PG   P 0 1 N N N 12.780 -12.051 -26.820 6.402  2.448  0.501  PG   5SI 9  
5SI "C1'"  C1*  C 0 1 N N R 14.500 -10.898 -34.368 -3.115 -1.495 0.734  C1*  5SI 10 
5SI O1A    O1A  O 0 1 N N N 11.033 -12.540 -29.793 2.261  -1.052 -2.378 O1A  5SI 11 
5SI O1B    O1B  O 0 1 N N N 13.559 -12.614 -29.590 5.852  -1.210 0.616  O1B  5SI 12 
5SI O1G    O1G  O 0 1 N N N 14.088 -12.399 -26.158 7.675  1.925  1.337  O1G  5SI 13 
5SI "C2'"  C2*  C 0 1 N N N 13.669 -10.367 -35.525 -3.481 -2.943 0.339  C2*  5SI 14 
5SI O2A    O2A  O 0 1 N N N 9.830  -10.350 -30.528 3.217  -2.849 -0.886 O2A  5SI 15 
5SI O2B    O2B  O 0 1 N N N 14.846 -10.322 -29.618 5.444  -0.005 -1.564 O2B  5SI 16 
5SI O2G    O2G  O 0 1 N N N 12.228 -13.127 -27.731 6.796  2.674  -0.908 O2G  5SI 17 
5SI "C3'"  C3*  C 0 1 N N S 12.701 -9.390  -34.885 -2.114 -3.639 0.153  C3*  5SI 18 
5SI "O3'"  O3*  O 0 1 N N N 13.236 -8.065  -34.942 -1.972 -4.720 1.077  O3*  5SI 19 
5SI S36    S36  S 0 1 N N N 16.829 -11.633 -35.986 -4.677 0.087  2.637  S36  5SI 20 
5SI C37    C37  C 0 1 Y N N 15.621 -16.491 -34.690 -6.725 2.137  -1.668 C37  5SI 21 
5SI C38    C38  C 0 1 Y N N 16.713 -16.958 -35.426 -7.515 2.941  -0.877 C38  5SI 22 
5SI C39    C39  C 0 1 Y N N 17.555 -16.073 -36.104 -7.436 2.871  0.508  C39  5SI 23 
5SI O3A    O3A  O 0 1 N N N 12.348 -10.405 -30.065 3.437  -0.460 -0.102 O3A  5SI 24 
5SI O3B    O3B  O 0 1 N N N 13.171 -10.840 -27.806 5.231  1.344  0.560  O3B  5SI 25 
5SI O3G    O3G  O 0 1 N N N 11.766 -11.430 -25.885 5.871  3.828  1.138  O3G  5SI 26 
5SI "C4'"  C4*  C 0 1 N N R 12.611 -9.810  -33.432 -1.083 -2.528 0.457  C4*  5SI 27 
5SI "O4'"  O4*  O 0 1 N N N 13.729 -10.674 -33.184 -1.787 -1.293 0.203  O4*  5SI 28 
5SI C40    C40  C 0 1 Y N N 17.333 -14.687 -36.070 -6.567 1.995  1.121  C40  5SI 29 
5SI C41    C41  C 0 1 N N N 16.978 -18.443 -35.478 -8.475 3.908  -1.520 C41  5SI 30 
5SI "C5'"  C5*  C 0 1 N N N 11.272 -10.468 -33.087 0.125  -2.654 -0.473 C5*  5SI 31 
5SI "O5'"  O5*  O 0 1 N N N 11.492 -11.457 -32.083 1.115  -1.693 -0.101 O5*  5SI 32 
5SI H2     H2   H 0 1 N N N 13.206 -12.880 -33.267 -3.502 -1.121 -1.825 H2   5SI 33 
5SI H3     H3   H 0 1 N N N 13.632 -15.284 -33.374 -5.007 0.392  -2.940 H3   5SI 34 
5SI "H1'"  H1*  H 0 1 N N N 15.470 -10.379 -34.350 -3.111 -1.385 1.818  H1*  5SI 35 
5SI HO1A   HO1A H 0 0 N N N 11.595 -12.473 -29.030 1.809  -0.200 -2.442 HO1A 5SI 36 
5SI HO1B   HO1B H 0 0 N N N 13.043 -13.042 -28.917 5.615  -1.316 1.548  HO1B 5SI 37 
5SI HO1G   HO1G H 0 0 N N N 14.361 -13.267 -26.431 7.489  1.756  2.270  HO1G 5SI 38 
5SI "H2'"  H2*  H 0 1 N N N 14.303 -9.865  -36.271 -4.049 -3.424 1.136  H2*  5SI 39 
5SI "H2'A" H2*A H 0 0 N N N 13.132 -11.181 -36.034 -4.045 -2.954 -0.593 H2*A 5SI 40 
5SI "H3'"  H3*  H 0 1 N N N 11.726 -9.395  -35.394 -2.002 -3.993 -0.872 H3*  5SI 41 
5SI "HO3'" HO3* H 0 0 N N N 12.625 -7.459  -34.540 -2.632 -5.418 0.970  HO3* 5SI 42 
5SI H37    H37  H 0 1 N N N 14.980 -17.189 -34.171 -6.792 2.199  -2.744 H37  5SI 43 
5SI H39    H39  H 0 1 N N N 18.392 -16.462 -36.665 -8.063 3.510  1.112  H39  5SI 44 
5SI HO3G   HO3G H 0 0 N N N 10.917 -11.831 -26.027 6.525  4.539  1.135  HO3G 5SI 45 
5SI "H4'"  H4*  H 0 1 N N N 12.653 -8.928  -32.776 -0.768 -2.578 1.499  H4*  5SI 46 
5SI H40    H40  H 0 1 N N N 17.992 -14.016 -36.602 -6.512 1.947  2.198  H40  5SI 47 
5SI H41    H41  H 0 1 N N N 16.443 -18.882 -36.333 -9.437 3.418  -1.671 H41  5SI 48 
5SI H41A   H41A H 0 0 N N N 18.058 -18.619 -35.592 -8.606 4.775  -0.873 H41A 5SI 49 
5SI H41B   H41B H 0 0 N N N 16.626 -18.911 -34.547 -8.076 4.229  -2.482 H41B 5SI 50 
5SI "H5'"  H5*  H 0 1 N N N 10.571 -9.708  -32.712 0.543  -3.657 -0.392 H5*  5SI 51 
5SI "H5'A" H5*A H 0 0 N N N 10.848 -10.940 -33.986 -0.188 -2.473 -1.502 H5*A 5SI 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5SI C6    N1     SING N N 1  
5SI N1    "C1'"  SING N N 2  
5SI N1    C2     SING N N 3  
5SI C3    C2     DOUB N N 4  
5SI C2    H2     SING N N 5  
5SI C4    C3     SING N N 6  
5SI C3    H3     SING N N 7  
5SI C5    C4     DOUB Y N 8  
5SI C37   C4     SING Y N 9  
5SI C40   C5     SING Y N 10 
5SI C5    C6     SING N N 11 
5SI S36   C6     DOUB N N 12 
5SI "O5'" PA     SING N N 13 
5SI PA    O2A    DOUB N N 14 
5SI PA    O3A    SING N N 15 
5SI PA    O1A    SING N N 16 
5SI O3A   PB     SING N N 17 
5SI O2B   PB     DOUB N N 18 
5SI O1B   PB     SING N N 19 
5SI PB    O3B    SING N N 20 
5SI O3B   PG     SING N N 21 
5SI O2G   PG     DOUB N N 22 
5SI PG    O1G    SING N N 23 
5SI PG    O3G    SING N N 24 
5SI "C2'" "C1'"  SING N N 25 
5SI "C1'" "O4'"  SING N N 26 
5SI "C1'" "H1'"  SING N N 27 
5SI O1A   HO1A   SING N N 28 
5SI O1B   HO1B   SING N N 29 
5SI O1G   HO1G   SING N N 30 
5SI "C2'" "C3'"  SING N N 31 
5SI "C2'" "H2'"  SING N N 32 
5SI "C2'" "H2'A" SING N N 33 
5SI "O3'" "C3'"  SING N N 34 
5SI "C3'" "C4'"  SING N N 35 
5SI "C3'" "H3'"  SING N N 36 
5SI "O3'" "HO3'" SING N N 37 
5SI C38   C37    DOUB Y N 38 
5SI C37   H37    SING N N 39 
5SI C39   C38    SING Y N 40 
5SI C41   C38    SING N N 41 
5SI C39   C40    DOUB Y N 42 
5SI C39   H39    SING N N 43 
5SI O3G   HO3G   SING N N 44 
5SI "C4'" "O4'"  SING N N 45 
5SI "C4'" "C5'"  SING N N 46 
5SI "C4'" "H4'"  SING N N 47 
5SI C40   H40    SING N N 48 
5SI C41   H41    SING N N 49 
5SI C41   H41A   SING N N 50 
5SI C41   H41B   SING N N 51 
5SI "C5'" "O5'"  SING N N 52 
5SI "C5'" "H5'"  SING N N 53 
5SI "C5'" "H5'A" SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5SI SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(N2C(=S)c1c(cc(cc1)C)C=C2)CC3O"                                                                                                                                    
5SI InChI            InChI                1.03  "InChI=1S/C15H20NO12P3S/c1-9-2-3-11-10(6-9)4-5-16(15(11)32)14-7-12(17)13(26-14)8-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-6,12-14,17H,7-8H2,1H3,(H,21,22)(H,23,24)(H2,18,19,20)/t12-,13+,14+/m0/s1" 
5SI InChIKey         InChI                1.03  HHAKTXADNAZKDV-BFHYXJOUSA-N                                                                                                                                                                          
5SI SMILES_CANONICAL CACTVS               3.370 "Cc1ccc2C(=S)N(C=Cc2c1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                                 
5SI SMILES           CACTVS               3.370 "Cc1ccc2C(=S)N(C=Cc2c1)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                                     
5SI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "Cc1ccc2c(c1)C=CN(C2=S)[C@H]3C[C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O"                                                                                                                
5SI SMILES           "OpenEye OEToolkits" 1.7.2 "Cc1ccc2c(c1)C=CN(C2=S)C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5SI "SYSTEMATIC NAME" ACDLabs              12.01 "2-{2-deoxy-5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-6-methylisoquinoline-1(2H)-thione" 
5SI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[[(2R,3S,5R)-5-(6-methyl-1-sulfanylidene-isoquinolin-2-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5SI "Create component" 2011-07-29 RCSB 
# 
