data_59I
# 
_chem_comp.id                                    59I 
_chem_comp.name                                  "(2R,3R)-3-methyl-4-(2-oxidanylidene-2-propan-2-yloxy-ethyl)sulfanyl-2-[(2R)-3-oxidanyl-1-oxidanylidene-butan-2-yl]-2,3-dihydro-1H-pyrrole-5-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H23 N O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-08-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        345.411 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     59I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7F8P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
59I C10 C1  C 0 1 N N R N N N 1.502  6.244 55.610 1.263  0.229  -1.349 C10 59I 1  
59I C12 C2  C 0 1 N N N N N N 0.528  6.382 56.806 1.225  0.054  -2.868 C12 59I 2  
59I C13 C3  C 0 1 N N N N N N 2.003  6.225 52.156 0.985  -2.688 0.903  C13 59I 3  
59I C17 C4  C 0 1 N N N N N N -1.192 8.284 53.309 -1.924 0.247  -0.153 C17 59I 4  
59I C18 C5  C 0 1 N N N N N N -2.492 8.250 52.513 -3.424 0.110  -0.108 C18 59I 5  
59I C22 C6  C 0 1 N N N N N N -3.555 6.099 50.910 -6.224 1.665  1.581  C22 59I 6  
59I C3  C7  C 0 1 N N R N N N 3.783  7.137 56.026 3.117  1.365  -0.073 C3  59I 7  
59I C5  C8  C 0 1 N N N N N N 3.828  6.515 57.412 2.270  1.506  1.166  C5  59I 8  
59I C7  C9  C 0 1 N N R N N N 2.328  7.446 55.586 2.706  0.100  -0.829 C7  59I 9  
59I C8  C10 C 0 1 N N N N N N 1.525  6.910 53.413 1.363  -1.572 0.120  C8  59I 10 
59I C9  C11 C 0 1 N N N N N N 0.649  6.309 54.361 0.510  -0.891 -0.669 C9  59I 11 
59I C21 C12 C 0 1 N N N N N N -2.408 7.009 50.459 -5.613 0.904  0.404  C21 59I 12 
59I C23 C13 C 0 1 N N N N N N -2.544 7.276 48.962 -6.211 1.423  -0.905 C23 59I 13 
59I N6  N1  N 0 1 N N N N N N 2.362  7.917 54.232 2.671  -1.053 0.081  N6  59I 14 
59I O11 O1  O 0 1 N N N N N N 3.855  7.250 58.359 1.575  2.482  1.314  O11 59I 15 
59I O14 O2  O 0 1 N N N N N N 2.575  5.114 52.267 1.922  -3.382 1.585  O14 59I 16 
59I O15 O3  O 0 1 N N N N N N 1.816  6.759 51.033 -0.183 -3.023 0.963  O15 59I 17 
59I O19 O4  O 0 1 N N N N N N -2.443 8.250 51.111 -4.175 1.105  0.392  O19 59I 18 
59I O20 O5  O 0 1 N N N N N N -3.529 8.256 53.085 -3.952 -0.895 -0.522 O20 59I 19 
59I S16 S1  S 0 1 N N N N N N -1.078 6.852 54.418 -1.203 -1.247 -0.875 S16 59I 20 
59I H1  H1  H 0 1 N N N N N N 2.089  5.316 55.667 0.843  1.195  -1.068 H1  59I 21 
59I H2  H2  H 0 1 N N N N N N 1.095  6.342 57.748 1.636  -0.921 -3.132 H2  59I 22 
59I H3  H3  H 0 1 N N N N N N -0.002 7.344 56.738 0.194  0.119  -3.215 H3  59I 23 
59I H4  H4  H 0 1 N N N N N N -0.201 5.559 56.782 1.817  0.838  -3.340 H4  59I 24 
59I H5  H5  H 0 1 N N N N N N -0.342 8.269 52.612 -1.656 1.111  -0.762 H5  59I 25 
59I H6  H6  H 0 1 N N N N N N -1.159 9.207 53.907 -1.541 0.383  0.859  H6  59I 26 
59I H7  H7  H 0 1 N N N N N N -3.465 5.901 51.988 -6.007 2.728  1.479  H7  59I 27 
59I H8  H8  H 0 1 N N N N N N -4.517 6.593 50.707 -7.304 1.514  1.590  H8  59I 28 
59I H9  H9  H 0 1 N N N N N N -3.508 5.149 50.358 -5.798 1.295  2.514  H9  59I 29 
59I H10 H10 H 0 1 N N N N N N 4.478  7.978 55.884 2.971  2.234  -0.713 H10 59I 30 
59I H12 H12 H 0 1 N N N N N N 3.835  5.443 57.540 2.285  0.734  1.921  H12 59I 31 
59I H13 H13 H 0 1 N N N N N N 1.906  8.212 56.253 3.392  -0.087 -1.656 H13 59I 32 
59I H16 H16 H 0 1 N N N N N N -1.452 6.497 50.646 -5.830 -0.160 0.506  H16 59I 33 
59I H17 H17 H 0 1 N N N N N N -1.724 7.929 48.630 -5.993 2.486  -1.008 H17 59I 34 
59I H18 H18 H 0 1 N N N N N N -2.499 6.323 48.414 -5.775 0.880  -1.744 H18 59I 35 
59I H19 H19 H 0 1 N N N N N N -3.508 7.768 48.763 -7.290 1.272  -0.897 H19 59I 36 
59I H20 H20 H 0 1 N N N N N N 3.303  7.942 53.896 3.429  -1.401 0.577  H20 59I 37 
59I H22 H22 H 0 1 N N N N N N 2.814  4.793 51.405 1.569  -4.126 2.091  H22 59I 38 
59I C2  C14 C 0 1 N N N N N N ?      ?     ?      4.590  1.265  0.326  C2  59I 39 
59I O4  O6  O 0 1 N N N N N N ?      ?     ?      5.393  1.131  -0.849 O4  59I 40 
59I C1  C16 C 0 1 N N N N N N ?      ?     ?      5.001  2.530  1.082  C1  59I 41 
59I H11 H11 H 0 1 N N N N N N ?      ?     ?      4.736  0.396  0.966  H11 59I 42 
59I H14 H14 H 0 1 N N N N N N ?      ?     ?      5.314  1.872  -1.466 H14 59I 43 
59I H23 H23 H 0 1 N N N N N N ?      ?     ?      4.388  2.632  1.978  H23 59I 44 
59I H24 H24 H 0 1 N N N N N N ?      ?     ?      6.051  2.460  1.366  H24 59I 45 
59I H25 H25 H 0 1 N N N N N N ?      ?     ?      4.855  3.400  0.442  H25 59I 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
59I C23 C21 SING N N 1  
59I C21 C22 SING N N 2  
59I C21 O19 SING N N 3  
59I O15 C13 DOUB N N 4  
59I O19 C18 SING N N 5  
59I C13 O14 SING N N 6  
59I C13 C8  SING N N 7  
59I C18 O20 DOUB N N 8  
59I C18 C17 SING N N 9  
59I C17 S16 SING N N 10 
59I C8  N6  SING N N 11 
59I C8  C9  DOUB N N 12 
59I N6  C7  SING N N 13 
59I C9  S16 SING N N 14 
59I C9  C10 SING N N 15 
59I C7  C10 SING N N 16 
59I C7  C3  SING N N 17 
59I C10 C12 SING N N 18 
59I C3  C5  SING N N 19 
59I C5  O11 DOUB N N 20 
59I C10 H1  SING N N 21 
59I C12 H2  SING N N 22 
59I C12 H3  SING N N 23 
59I C12 H4  SING N N 24 
59I C17 H5  SING N N 25 
59I C17 H6  SING N N 26 
59I C22 H7  SING N N 27 
59I C22 H8  SING N N 28 
59I C22 H9  SING N N 29 
59I C3  H10 SING N N 30 
59I C5  H12 SING N N 31 
59I C7  H13 SING N N 32 
59I C21 H16 SING N N 33 
59I C23 H17 SING N N 34 
59I C23 H18 SING N N 35 
59I C23 H19 SING N N 36 
59I N6  H20 SING N N 37 
59I O14 H22 SING N N 38 
59I C3  C2  SING N N 39 
59I C2  O4  SING N N 40 
59I C2  C1  SING N N 41 
59I C2  H11 SING N N 42 
59I O4  H14 SING N N 43 
59I C1  H23 SING N N 44 
59I C1  H24 SING N N 45 
59I C1  H25 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
59I InChI            InChI                1.03  "InChI=1S/C15H23NO6S/c1-7(2)22-11(19)6-23-14-8(3)12(10(5-17)9(4)18)16-13(14)15(20)21/h5,7-10,12,16,18H,6H2,1-4H3,(H,20,21)/t8-,9?,10?,12+/m1/s1" 
59I InChIKey         InChI                1.03  BCFABNCZHGBALS-QARRAHMOSA-N                                                                                                                      
59I SMILES_CANONICAL CACTVS               3.385 "CC(C)OC(=O)CSC1=C(N[C@@H]([C@H]1C)[C@@H](C=O)C(C)O)C(O)=O"                                                                                      
59I SMILES           CACTVS               3.385 "CC(C)OC(=O)CSC1=C(N[CH]([CH]1C)[CH](C=O)C(C)O)C(O)=O"                                                                                           
59I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@H](NC(=C1SCC(=O)OC(C)C)C(=O)O)[C@@H](C=O)C(C)O"                                                                                      
59I SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C(NC(=C1SCC(=O)OC(C)C)C(=O)O)C(C=O)C(C)O"                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           59I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{R})-3-methyl-4-(2-oxidanylidene-2-propan-2-yloxy-ethyl)sulfanyl-2-[(2~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-2,3-dihydro-1~{H}-pyrrole-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
59I "Create component" 2021-08-12 PDBJ 
59I "Initial release"  2022-05-11 RCSB 
59I "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            59I 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C5 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
