data_4XI
# 
_chem_comp.id                                    4XI 
_chem_comp.name                                  "5-[[(2S)-2-(4-chlorophenyl)-1'-methyl-spiro[2H-indole-3,4'-piperidine]-1-yl]methyl]-N-oxidanyl-thiophene-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H26 Cl N3 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-07 
_chem_comp.pdbx_modified_date                    2022-07-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        468.011 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4XI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7P2V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4XI C1  C1  C  0 1 Y N N -8.540  32.634 33.734 -4.684 0.663  0.556  C1  4XI 1  
4XI C2  C2  C  0 1 Y N N -8.580  36.649 30.422 -1.175 -1.362 1.146  C2  4XI 2  
4XI C3  C3  C  0 1 Y N N -8.986  37.420 29.348 -0.721 -2.593 1.578  C3  4XI 3  
4XI C4  C4  C  0 1 Y N N -9.410  38.706 29.574 0.349  -3.198 0.943  C4  4XI 4  
4XI C5  C5  C  0 1 Y N N -9.434  39.238 30.840 0.964  -2.569 -0.125 C5  4XI 5  
4XI C6  C6  C  0 1 Y N N -9.027  38.458 31.906 0.509  -1.337 -0.557 C6  4XI 6  
4XI C7  C7  C  0 1 N N N -5.672  36.317 32.222 -0.221 1.260  1.788  C7  4XI 7  
4XI C8  C8  C  0 1 Y N N -5.477  36.212 30.743 1.166  1.560  1.281  C8  4XI 8  
4XI C10 C9  C  0 1 Y N N -5.264  35.317 28.604 3.004  2.828  0.776  C10 4XI 9  
4XI C11 C10 C  0 1 Y N N -5.077  36.665 28.344 3.470  1.614  0.358  C11 4XI 10 
4XI C12 C11 C  0 1 Y N N -7.528  31.682 33.687 -5.206 1.061  1.774  C12 4XI 11 
4XI C13 C12 C  0 1 N N N -4.780  37.364 27.065 4.792  1.366  -0.226 C13 4XI 12 
4XI C14 C13 C  0 1 N N N -10.289 34.946 32.353 -2.794 -0.926 -1.386 C14 4XI 13 
4XI C15 C14 C  0 1 N N N -9.724  35.435 34.719 -2.736 1.492  -2.052 C15 4XI 14 
4XI C16 C15 C  0 1 N N N -11.199 35.757 34.587 -1.887 1.094  -3.263 C16 4XI 15 
4XI C17 C16 C  0 1 N N N -11.333 34.015 32.940 -1.943 -1.243 -2.620 C17 4XI 16 
4XI C19 C17 C  0 1 Y N N -6.245  32.031 33.290 -4.383 1.649  2.716  C19 4XI 17 
4XI C21 C18 C  0 1 Y N N -6.952  34.268 32.977 -2.510 1.444  1.222  C21 4XI 18 
4XI C22 C19 C  0 1 Y N N -8.243  33.935 33.374 -3.345 0.846  0.283  C22 4XI 19 
4XI C23 C20 C  0 1 N N S -8.151  36.308 32.887 -1.061 0.606  -0.397 C23 4XI 20 
4XI C25 C21 C  0 1 Y N N -8.599  37.155 31.712 -0.561 -0.734 0.078  C25 4XI 21 
4XI C18 C22 C  0 1 N N N -13.355 34.924 33.899 -1.556 -0.629 -4.930 C18 4XI 22 
4XI C20 C23 C  0 1 Y N N -5.931  33.330 32.929 -3.044 1.844  2.445  C20 4XI 23 
4XI C24 C24 C  0 1 N N N -9.128  35.173 33.331 -2.504 0.496  -0.922 C24 4XI 24 
4XI C9  C25 C  0 1 Y N N -5.493  35.074 29.973 1.727  2.775  1.284  C9  4XI 25 
4XI N1  N1  N  0 1 N N N -6.876  35.629 32.666 -1.202 1.551  0.734  N1  4XI 26 
4XI N2  N2  N  0 1 N N N -4.613  36.640 25.964 5.139  0.119  -0.601 N2  4XI 27 
4XI N3  N3  N  0 1 N N N -11.946 34.581 34.142 -2.238 -0.269 -3.679 N3  4XI 28 
4XI O1  O1  O  0 1 N N N -4.689  38.591 27.056 5.575  2.286  -0.371 O1  4XI 29 
4XI O2  O2  O  0 1 N N N -4.276  37.244 24.759 6.416  -0.121 -1.165 O2  4XI 30 
4XI S1  S1  S  0 1 Y N N -5.221  37.615 29.769 2.232  0.396  0.634  S1  4XI 31 
4XI CL1 CL1 CL 0 0 N N N -9.921  39.684 28.229 0.920  -4.744 1.487  CL1 4XI 32 
4XI H1  H1  H  0 1 N N N -9.538  32.363 34.045 -5.326 0.204  -0.181 H1  4XI 33 
4XI H2  H2  H  0 1 N N N -8.243  35.637 30.253 -2.014 -0.892 1.638  H2  4XI 34 
4XI H3  H3  H  0 1 N N N -8.970  37.016 28.346 -1.201 -3.083 2.412  H3  4XI 35 
4XI H4  H4  H  0 1 N N N -9.767  40.253 31.001 1.799  -3.040 -0.621 H4  4XI 36 
4XI H5  H5  H  0 1 N N N -9.043  38.870 32.904 0.989  -0.846 -1.390 H5  4XI 37 
4XI H6  H6  H  0 1 N N N -4.802  35.871 32.727 -0.287 0.207  2.065  H6  4XI 38 
4XI H7  H7  H  0 1 N N N -5.750  37.380 32.495 -0.431 1.878  2.661  H7  4XI 39 
4XI H8  H8  H  0 1 N N N -5.237  34.546 27.849 3.581  3.739  0.714  H8  4XI 40 
4XI H9  H9  H  0 1 N N N -7.743  30.660 33.962 -6.254 0.913  1.987  H9  4XI 41 
4XI H10 H10 H  0 1 N N N -9.895  34.503 31.426 -3.850 -1.018 -1.640 H10 4XI 42 
4XI H11 H11 H  0 1 N N N -10.760 35.914 32.126 -2.550 -1.627 -0.587 H11 4XI 43 
4XI H12 H12 H  0 1 N N N -9.600  34.540 35.346 -2.451 2.491  -1.720 H12 4XI 44 
4XI H13 H13 H  0 1 N N N -9.204  36.285 35.186 -3.790 1.488  -2.329 H13 4XI 45 
4XI H14 H14 H  0 1 N N N -11.328 36.566 33.853 -2.078 1.786  -4.083 H14 4XI 46 
4XI H15 H15 H  0 1 N N N -11.586 36.083 35.564 -0.831 1.132  -2.994 H15 4XI 47 
4XI H16 H16 H  0 1 N N N -12.117 33.839 32.189 -0.887 -1.185 -2.357 H16 4XI 48 
4XI H17 H17 H  0 1 N N N -10.853 33.060 33.200 -2.176 -2.247 -2.974 H17 4XI 49 
4XI H18 H18 H  0 1 N N N -5.476  31.274 33.262 -4.789 1.957  3.668  H18 4XI 50 
4XI H19 H19 H  0 1 N N N -8.033  36.981 33.749 -0.401 1.014  -1.163 H19 4XI 51 
4XI H20 H20 H  0 1 N N N -13.793 35.347 34.815 -1.893 -1.614 -5.256 H20 4XI 52 
4XI H21 H21 H  0 1 N N N -13.417 35.664 33.088 -1.792 0.108  -5.697 H21 4XI 53 
4XI H22 H22 H  0 1 N N N -13.909 34.018 33.612 -0.479 -0.650 -4.764 H22 4XI 54 
4XI H23 H23 H  0 1 N N N -4.932  33.602 32.622 -2.407 2.305  3.185  H23 4XI 55 
4XI H24 H24 H  0 1 N N N -5.665  34.088 30.378 1.215  3.649  1.658  H24 4XI 56 
4XI H25 H25 H  0 1 N N N -4.731  35.648 26.003 4.515  -0.614 -0.486 H25 4XI 57 
4XI H27 H27 H  0 1 N N N -4.218  38.184 24.881 6.574  -1.045 -1.403 H27 4XI 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4XI O2  N2  SING N N 1  
4XI N2  C13 SING N N 2  
4XI O1  C13 DOUB N N 3  
4XI C13 C11 SING N N 4  
4XI CL1 C4  SING N N 5  
4XI C11 C10 DOUB Y N 6  
4XI C11 S1  SING Y N 7  
4XI C10 C9  SING Y N 8  
4XI C3  C4  DOUB Y N 9  
4XI C3  C2  SING Y N 10 
4XI C4  C5  SING Y N 11 
4XI S1  C8  SING Y N 12 
4XI C9  C8  DOUB Y N 13 
4XI C2  C25 DOUB Y N 14 
4XI C8  C7  SING N N 15 
4XI C5  C6  DOUB Y N 16 
4XI C25 C6  SING Y N 17 
4XI C25 C23 SING N N 18 
4XI C7  N1  SING N N 19 
4XI C14 C17 SING N N 20 
4XI C14 C24 SING N N 21 
4XI N1  C23 SING N N 22 
4XI N1  C21 SING N N 23 
4XI C23 C24 SING N N 24 
4XI C20 C21 DOUB Y N 25 
4XI C20 C19 SING Y N 26 
4XI C17 N3  SING N N 27 
4XI C21 C22 SING Y N 28 
4XI C19 C12 DOUB Y N 29 
4XI C24 C22 SING N N 30 
4XI C24 C15 SING N N 31 
4XI C22 C1  DOUB Y N 32 
4XI C12 C1  SING Y N 33 
4XI C18 N3  SING N N 34 
4XI N3  C16 SING N N 35 
4XI C16 C15 SING N N 36 
4XI C1  H1  SING N N 37 
4XI C2  H2  SING N N 38 
4XI C3  H3  SING N N 39 
4XI C5  H4  SING N N 40 
4XI C6  H5  SING N N 41 
4XI C7  H6  SING N N 42 
4XI C7  H7  SING N N 43 
4XI C10 H8  SING N N 44 
4XI C12 H9  SING N N 45 
4XI C14 H10 SING N N 46 
4XI C14 H11 SING N N 47 
4XI C15 H12 SING N N 48 
4XI C15 H13 SING N N 49 
4XI C16 H14 SING N N 50 
4XI C16 H15 SING N N 51 
4XI C17 H16 SING N N 52 
4XI C17 H17 SING N N 53 
4XI C19 H18 SING N N 54 
4XI C23 H19 SING N N 55 
4XI C18 H20 SING N N 56 
4XI C18 H21 SING N N 57 
4XI C18 H22 SING N N 58 
4XI C20 H23 SING N N 59 
4XI C9  H24 SING N N 60 
4XI N2  H25 SING N N 61 
4XI O2  H27 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4XI InChI            InChI                1.03  "InChI=1S/C25H26ClN3O2S/c1-28-14-12-25(13-15-28)20-4-2-3-5-21(20)29(23(25)17-6-8-18(26)9-7-17)16-19-10-11-22(32-19)24(30)27-31/h2-11,23,31H,12-16H2,1H3,(H,27,30)/t23-/m0/s1" 
4XI InChIKey         InChI                1.03  DLQYRYFSBDRUBH-QHCPKHFHSA-N                                                                                                                                                   
4XI SMILES_CANONICAL CACTVS               3.385 "CN1CCC2(CC1)[C@@H](N(Cc3sc(cc3)C(=O)NO)c4ccccc24)c5ccc(Cl)cc5"                                                                                                               
4XI SMILES           CACTVS               3.385 "CN1CCC2(CC1)[CH](N(Cc3sc(cc3)C(=O)NO)c4ccccc24)c5ccc(Cl)cc5"                                                                                                                 
4XI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCC2(CC1)c3ccccc3N([C@H]2c4ccc(cc4)Cl)Cc5ccc(s5)C(=O)NO"                                                                                                                  
4XI SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CCC2(CC1)c3ccccc3N(C2c4ccc(cc4)Cl)Cc5ccc(s5)C(=O)NO"                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           4XI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "5-[[(2~{S})-2-(4-chlorophenyl)-1'-methyl-spiro[2~{H}-indole-3,4'-piperidine]-1-yl]methyl]-~{N}-oxidanyl-thiophene-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4XI "Create component" 2021-07-07 PDBE 
4XI "Initial release"  2022-07-20 RCSB 
# 
