data_3KI
# 
_chem_comp.id                                    3KI 
_chem_comp.name                                  "(6~{R},7~{R},9~{E})-6,7-bis(oxidanyl)hexadeca-9,15-dien-11,13-diynoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H20 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        276.328 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3KI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FEA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3KI C14 C1  C 0 1 N N N N N N -65.172 -61.429 -93.561  -2.549 0.009  0.129  C14 3KI 1  
3KI C15 C2  C 0 1 N N N N N N -65.115 -62.166 -92.222  -3.908 0.499  -0.372 C15 3KI 2  
3KI C16 C3  C 0 1 N N N N N N -64.355 -61.336 -91.180  -4.984 -0.529 -0.015 C16 3KI 3  
3KI C01 C4  C 0 1 N N N N N N -63.362 -58.672 -106.423 10.199 -1.400 -0.530 C01 3KI 4  
3KI C02 C5  C 0 1 N N N N N N -63.906 -59.116 -105.449 9.254  -1.461 0.411  C02 3KI 5  
3KI C03 C6  C 0 1 N N N N N N -64.486 -59.739 -104.189 7.955  -0.915 0.157  C03 3KI 6  
3KI C04 C7  C 0 1 N N N N N N -64.786 -60.342 -103.239 6.890  -0.467 -0.050 C04 3KI 7  
3KI C05 C8  C 0 1 N N N N N N -64.957 -61.105 -101.935 5.641  0.059  -0.294 C05 3KI 8  
3KI C06 C9  C 0 1 N N N N N N -65.129 -61.590 -100.868 4.575  0.507  -0.501 C06 3KI 9  
3KI C07 C10 C 0 1 N N N N N N -64.990 -62.189 -99.477  3.276  1.053  -0.755 C07 3KI 10 
3KI C08 C11 C 0 1 N N N N N N -65.733 -61.733 -98.524  2.331  0.992  0.186  C08 3KI 11 
3KI C09 C12 C 0 1 N N N N N N -65.566 -62.437 -97.197  0.964  1.567  -0.081 C09 3KI 12 
3KI C10 C13 C 0 1 N N R N N N -65.628 -61.481 -96.034  -0.097 0.492  0.161  C10 3KI 13 
3KI C12 C14 C 0 1 N N R N N N -65.529 -62.309 -94.754  -1.473 1.037  -0.228 C12 3KI 14 
3KI C17 C15 C 0 1 N N N N N N -64.700 -61.666 -89.720  -6.344 -0.040 -0.516 C17 3KI 15 
3KI C18 C16 C 0 1 N N N N N N -63.828 -60.913 -88.697  -7.404 -1.052 -0.164 C18 3KI 16 
3KI O11 O1  O 0 1 N N N N N N -66.856 -60.853 -96.118  -0.102 0.130  1.544  O11 3KI 17 
3KI O13 O2  O 0 1 N N N N N N -66.746 -62.983 -94.551  -1.722 2.253  0.480  O13 3KI 18 
3KI O19 O3  O 0 1 N N N N N N -62.810 -61.499 -88.223  -8.682 -0.832 -0.507 O19 3KI 19 
3KI O20 O4  O 0 1 N N N N N N -64.107 -59.728 -88.322  -7.102 -2.061 0.427  O20 3KI 20 
3KI H1  H1  H 0 1 N N N N N N -64.185 -60.981 -93.748  -2.584 -0.118 1.211  H1  3KI 21 
3KI H2  H2  H 0 1 N N N N N N -65.928 -60.633 -93.483  -2.310 -0.945 -0.341 H2  3KI 22 
3KI H3  H3  H 0 1 N N N N N N -66.140 -62.345 -91.864  -4.147 1.453  0.098  H3  3KI 23 
3KI H4  H4  H 0 1 N N N N N N -64.602 -63.129 -92.361  -3.873 0.626  -1.454 H4  3KI 24 
3KI H5  H5  H 0 1 N N N N N N -63.278 -61.507 -91.325  -4.746 -1.483 -0.485 H5  3KI 25 
3KI H6  H6  H 0 1 N N N N N N -64.584 -60.274 -91.355  -5.020 -0.656 1.067  H6  3KI 26 
3KI H7  H7  H 0 1 N N N N N N -62.335 -58.933 -106.634 11.179 -1.812 -0.339 H7  3KI 27 
3KI H8  H8  H 0 1 N N N N N N -64.282 -62.982 -99.289  3.061  1.515  -1.707 H8  3KI 28 
3KI H10 H10 H 0 1 N N N N N N -66.421 -60.912 -98.664  2.547  0.530  1.138  H10 3KI 29 
3KI H12 H12 H 0 1 N N N N N N -66.369 -63.181 -97.087  0.788  2.409  0.589  H12 3KI 30 
3KI H13 H13 H 0 1 N N N N N N -64.591 -62.946 -97.186  0.908  1.907  -1.115 H13 3KI 31 
3KI H14 H14 H 0 1 N N N N N N -64.793 -60.767 -96.084  0.130  -0.386 -0.443 H14 3KI 32 
3KI H15 H15 H 0 1 N N N N N N -64.720 -63.043 -94.888  -1.497 1.230  -1.301 H15 3KI 33 
3KI H16 H16 H 0 1 N N N N N N -65.753 -61.401 -89.542  -6.583 0.915  -0.046 H16 3KI 34 
3KI H17 H17 H 0 1 N N N N N N -64.563 -62.746 -89.566  -6.308 0.087  -1.598 H17 3KI 35 
3KI H18 H18 H 0 1 N N N N N N -66.946 -60.235 -95.402  -0.298 0.864  2.142  H18 3KI 36 
3KI H19 H19 H 0 1 N N N N N N -66.693 -63.501 -93.756  -1.715 2.156  1.442  H19 3KI 37 
3KI H20 H20 H 0 1 N N N N N N -62.370 -60.923 -87.609  -9.326 -1.510 -0.260 H20 3KI 38 
3KI H21 H21 H 0 1 N N N N N N -63.899 -58.012 -107.088 9.984  -0.938 -1.482 H21 3KI 39 
3KI H22 H22 H 0 1 N N N N N N -64.829 -58.602 -105.674 9.469  -1.923 1.363  H22 3KI 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3KI C01 C02 DOUB N N 1  
3KI C02 C03 SING N N 2  
3KI C03 C04 TRIP N N 3  
3KI C04 C05 SING N N 4  
3KI C05 C06 TRIP N N 5  
3KI C06 C07 SING N N 6  
3KI C07 C08 DOUB N E 7  
3KI C08 C09 SING N N 8  
3KI C09 C10 SING N N 9  
3KI O11 C10 SING N N 10 
3KI C10 C12 SING N N 11 
3KI C12 O13 SING N N 12 
3KI C12 C14 SING N N 13 
3KI C14 C15 SING N N 14 
3KI C15 C16 SING N N 15 
3KI C16 C17 SING N N 16 
3KI C17 C18 SING N N 17 
3KI C18 O20 DOUB N N 18 
3KI C18 O19 SING N N 19 
3KI C14 H1  SING N N 20 
3KI C14 H2  SING N N 21 
3KI C15 H3  SING N N 22 
3KI C15 H4  SING N N 23 
3KI C16 H5  SING N N 24 
3KI C16 H6  SING N N 25 
3KI C01 H7  SING N N 26 
3KI C07 H8  SING N N 27 
3KI C08 H10 SING N N 28 
3KI C09 H12 SING N N 29 
3KI C09 H13 SING N N 30 
3KI C10 H14 SING N N 31 
3KI C12 H15 SING N N 32 
3KI C17 H16 SING N N 33 
3KI C17 H17 SING N N 34 
3KI O11 H18 SING N N 35 
3KI O13 H19 SING N N 36 
3KI O19 H20 SING N N 37 
3KI C01 H21 SING N N 38 
3KI C02 H22 SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3KI InChI            InChI                1.03  "InChI=1S/C16H20O4/c1-2-3-4-5-6-7-8-11-14(17)15(18)12-9-10-13-16(19)20/h2,7-8,14-15,17-18H,1,9-13H2,(H,19,20)/b8-7+/t14-,15-/m1/s1" 
3KI InChIKey         InChI                1.03  JBBDMFIFQBMXHD-FHFZEBMASA-N                                                                                                         
3KI SMILES_CANONICAL CACTVS               3.385 "O[C@H](CCCCC(O)=O)[C@H](O)C/C=C/C#CC#CC=C"                                                                                         
3KI SMILES           CACTVS               3.385 "O[CH](CCCCC(O)=O)[CH](O)CC=CC#CC#CC=C"                                                                                             
3KI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C=CC#CC#C/C=C/C[C@H]([C@@H](CCCCC(=O)O)O)O"                                                                                        
3KI SMILES           "OpenEye OEToolkits" 2.0.7 "C=CC#CC#CC=CCC(C(CCCCC(=O)O)O)O"                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           3KI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(6~{R},7~{R},9~{E})-6,7-bis(oxidanyl)hexadeca-9,15-dien-11,13-diynoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3KI "Create component" 2021-07-20 PDBJ 
3KI "Initial release"  2022-07-27 RCSB 
3KI "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            3KI 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C01 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
