data_2XI
# 
_chem_comp.id                                    2XI 
_chem_comp.name                                  "(2~{R})-~{N}-[(1~{R})-2-(~{tert}-butylamino)-2-oxidanylidene-1-pyridin-3-yl-ethyl]-~{N}-(4-~{tert}-butylphenyl)-2-oxidanyl-propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H33 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        411.537 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2XI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FAY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2XI C10 C1  C 0 1 Y N N N N N -9.939  -19.069 3.402  -0.224 3.077  2.366  C10 2XI 1  
2XI N12 N1  N 0 1 Y N N N N N -11.590 -20.369 4.524  -1.029 2.832  0.174  N12 2XI 2  
2XI C13 C2  C 0 1 Y N N N N N -12.017 -20.902 3.378  -0.329 1.727  0.007  C13 2XI 3  
2XI C15 C3  C 0 1 Y N N N N N -13.540 -22.578 -0.015 -0.990 -0.844 0.145  C15 2XI 4  
2XI C17 C4  C 0 1 Y N N N N N -15.948 -22.599 -0.271 -3.181 -0.205 0.880  C17 2XI 5  
2XI C20 C5  C 0 1 N N N N N N -17.021 -21.771 -3.456 -5.409 1.432  -0.334 C20 2XI 6  
2XI C21 C6  C 0 1 N N N N N N -16.899 -24.285 -3.387 -5.988 -0.965 0.066  C21 2XI 7  
2XI C22 C7  C 0 1 N N N N N N -18.364 -23.081 -1.822 -5.343 -0.202 -2.224 C22 2XI 8  
2XI C24 C8  C 0 1 Y N N N N N -13.411 -22.791 -1.391 -1.459 -0.944 -1.158 C24 2XI 9  
2XI C26 C9  C 0 1 N N R N N N -12.182 -24.759 1.689  2.225  -2.701 0.763  C26 2XI 10 
2XI C01 C10 C 0 1 N N N N N N -13.186 -18.562 -2.917 3.529  1.715  -2.455 C01 2XI 11 
2XI C02 C11 C 0 1 N N N N N N -13.648 -18.533 -1.466 4.229  1.342  -1.147 C02 2XI 12 
2XI C03 C12 C 0 1 N N N N N N -13.499 -17.124 -0.908 5.033  0.057  -1.348 C03 2XI 13 
2XI C04 C13 C 0 1 N N N N N N -15.112 -18.984 -1.434 5.171  2.474  -0.732 C04 2XI 14 
2XI C06 C14 C 0 1 N N N N N N -12.918 -19.949 0.487  2.285  0.179  -0.249 C06 2XI 15 
2XI C07 C15 C 0 1 N N R N N N -11.869 -20.983 0.854  1.254  -0.036 0.828  C07 2XI 16 
2XI C08 C16 C 0 1 Y N N N N N -11.388 -20.554 2.185  0.461  1.230  1.026  C08 2XI 17 
2XI C09 C17 C 0 1 Y N N N N N -10.366 -19.604 2.193  0.523  1.916  2.229  C09 2XI 18 
2XI C11 C18 C 0 1 Y N N N N N -10.579 -19.485 4.561  -0.998 3.508  1.306  C11 2XI 19 
2XI C16 C19 C 0 1 Y N N N N N -14.819 -22.502 0.534  -1.857 -0.476 1.165  C16 2XI 20 
2XI C18 C20 C 0 1 Y N N N N N -15.823 -22.871 -1.639 -3.646 -0.310 -0.418 C18 2XI 21 
2XI C19 C21 C 0 1 N N N N N N -17.024 -23.007 -2.557 -5.091 -0.012 -0.726 C19 2XI 22 
2XI C23 C22 C 0 1 Y N N N N N -14.543 -22.927 -2.189 -2.785 -0.676 -1.436 C23 2XI 23 
2XI C25 C23 C 0 1 N N N N N N -11.621 -23.413 1.237  0.814  -2.383 0.340  C25 2XI 24 
2XI C27 C24 C 0 1 N N N N N N -12.702 -25.605 0.533  2.318  -2.676 2.290  C27 2XI 25 
2XI N05 N2  N 0 1 N N N N N N -12.755 -19.428 -0.741 3.226  1.133  -0.100 N05 2XI 26 
2XI N14 N3  N 0 1 N N N N N N -12.370 -22.383 0.763  0.352  -1.120 0.431  N14 2XI 27 
2XI O28 O1  O 0 1 N N N N N N -11.112 -25.546 2.247  2.585  -3.999 0.285  O28 2XI 28 
2XI O29 O2  O 0 1 N N N N N N -10.414 -23.275 1.310  0.094  -3.263 -0.081 O29 2XI 29 
2XI O30 O3  O 0 1 N N N N N N -13.812 -19.623 1.278  2.268  -0.505 -1.250 O30 2XI 30 
2XI H1  H1  H 0 1 N N N N N N -9.133  -18.351 3.439  -0.203 3.634  3.291  H1  2XI 31 
2XI H2  H2  H 0 1 N N N N N N -12.843 -21.597 3.375  -0.380 1.201  -0.935 H2  2XI 32 
2XI H3  H3  H 0 1 N N N N N N -16.928 -22.464 0.162  -3.856 0.082  1.673  H3  2XI 33 
2XI H4  H4  H 0 1 N N N N N N -17.112 -20.866 -2.837 -5.230 1.567  0.732  H4  2XI 34 
2XI H5  H5  H 0 1 N N N N N N -16.080 -21.733 -4.024 -4.770 2.111  -0.899 H5  2XI 35 
2XI H6  H6  H 0 1 N N N N N N -17.869 -21.824 -4.154 -6.454 1.647  -0.557 H6  2XI 36 
2XI H7  H7  H 0 1 N N N N N N -16.904 -25.159 -2.719 -7.033 -0.750 -0.156 H7  2XI 37 
2XI H8  H8  H 0 1 N N N N N N -17.746 -24.353 -4.085 -5.761 -1.994 -0.213 H8  2XI 38 
2XI H9  H9  H 0 1 N N N N N N -15.957 -24.263 -3.955 -5.808 -0.830 1.133  H9  2XI 39 
2XI H10 H10 H 0 1 N N N N N N -18.377 -23.968 -1.171 -4.704 0.477  -2.788 H10 2XI 40 
2XI H11 H11 H 0 1 N N N N N N -18.497 -22.176 -1.211 -5.116 -1.231 -2.503 H11 2XI 41 
2XI H12 H12 H 0 1 N N N N N N -19.181 -23.152 -2.555 -6.388 0.013  -2.446 H12 2XI 42 
2XI H13 H13 H 0 1 N N N N N N -12.429 -22.850 -1.836 -0.786 -1.230 -1.954 H13 2XI 43 
2XI H14 H14 H 0 1 N N N N N N -12.983 -24.601 2.426  2.905  -1.958 0.345  H14 2XI 44 
2XI H15 H15 H 0 1 N N N N N N -12.135 -18.242 -2.974 4.275  1.872  -3.235 H15 2XI 45 
2XI H16 H16 H 0 1 N N N N N N -13.280 -19.585 -3.311 2.858  0.909  -2.751 H16 2XI 46 
2XI H17 H17 H 0 1 N N N N N N -13.810 -17.880 -3.514 2.956  2.632  -2.312 H17 2XI 47 
2XI H18 H18 H 0 1 N N N N N N -13.833 -17.107 0.140  5.779  0.213  -2.127 H18 2XI 48 
2XI H19 H19 H 0 1 N N N N N N -12.444 -16.819 -0.961 5.532  -0.209 -0.416 H19 2XI 49 
2XI H20 H20 H 0 1 N N N N N N -14.112 -16.429 -1.500 4.362  -0.750 -1.644 H20 2XI 50 
2XI H21 H21 H 0 1 N N N N N N -15.477 -18.974 -0.396 4.597  3.390  -0.589 H21 2XI 51 
2XI H22 H22 H 0 1 N N N N N N -15.720 -18.299 -2.043 5.669  2.208  0.200  H22 2XI 52 
2XI H23 H23 H 0 1 N N N N N N -15.191 -20.003 -1.840 5.917  2.630  -1.511 H23 2XI 53 
2XI H24 H24 H 0 1 N N N N N N -11.037 -20.876 0.142  1.752  -0.302 1.761  H24 2XI 54 
2XI H25 H25 H 0 1 N N N N N N -9.910  -19.287 1.267  1.137  1.555  3.041  H25 2XI 55 
2XI H26 H26 H 0 1 N N N N N N -10.257 -19.090 5.513  -1.586 4.409  1.406  H26 2XI 56 
2XI H27 H27 H 0 1 N N N N N N -14.934 -22.366 1.599  -1.497 -0.402 2.181  H27 2XI 57 
2XI H28 H28 H 0 1 N N N N N N -14.428 -23.078 -3.252 -3.151 -0.757 -2.449 H28 2XI 58 
2XI H29 H29 H 0 1 N N N N N N -13.091 -26.558 0.921  3.358  -2.801 2.593  H29 2XI 59 
2XI H30 H30 H 0 1 N N N N N N -13.508 -25.063 0.016  1.944  -1.722 2.661  H30 2XI 60 
2XI H31 H31 H 0 1 N N N N N N -11.882 -25.804 -0.173 1.719  -3.487 2.704  H31 2XI 61 
2XI H32 H32 H 0 1 N N N N N N -11.915 -19.687 -1.218 3.240  1.679  0.701  H32 2XI 62 
2XI H33 H33 H 0 1 N N N N N N -10.294 -25.069 2.170  3.482  -4.270 0.521  H33 2XI 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2XI C20 C19 SING N N 1  
2XI C21 C19 SING N N 2  
2XI C01 C02 SING N N 3  
2XI C19 C22 SING N N 4  
2XI C19 C18 SING N N 5  
2XI C23 C18 DOUB Y N 6  
2XI C23 C24 SING Y N 7  
2XI C18 C17 SING Y N 8  
2XI C02 C04 SING N N 9  
2XI C02 C03 SING N N 10 
2XI C02 N05 SING N N 11 
2XI C24 C15 DOUB Y N 12 
2XI N05 C06 SING N N 13 
2XI C17 C16 DOUB Y N 14 
2XI C15 C16 SING Y N 15 
2XI C15 N14 SING N N 16 
2XI C06 C07 SING N N 17 
2XI C06 O30 DOUB N N 18 
2XI C27 C26 SING N N 19 
2XI N14 C07 SING N N 20 
2XI N14 C25 SING N N 21 
2XI C07 C08 SING N N 22 
2XI C25 O29 DOUB N N 23 
2XI C25 C26 SING N N 24 
2XI C26 O28 SING N N 25 
2XI C08 C09 DOUB Y N 26 
2XI C08 C13 SING Y N 27 
2XI C09 C10 SING Y N 28 
2XI C13 N12 DOUB Y N 29 
2XI C10 C11 DOUB Y N 30 
2XI N12 C11 SING Y N 31 
2XI C10 H1  SING N N 32 
2XI C13 H2  SING N N 33 
2XI C17 H3  SING N N 34 
2XI C20 H4  SING N N 35 
2XI C20 H5  SING N N 36 
2XI C20 H6  SING N N 37 
2XI C21 H7  SING N N 38 
2XI C21 H8  SING N N 39 
2XI C21 H9  SING N N 40 
2XI C22 H10 SING N N 41 
2XI C22 H11 SING N N 42 
2XI C22 H12 SING N N 43 
2XI C24 H13 SING N N 44 
2XI C26 H14 SING N N 45 
2XI C01 H15 SING N N 46 
2XI C01 H16 SING N N 47 
2XI C01 H17 SING N N 48 
2XI C03 H18 SING N N 49 
2XI C03 H19 SING N N 50 
2XI C03 H20 SING N N 51 
2XI C04 H21 SING N N 52 
2XI C04 H22 SING N N 53 
2XI C04 H23 SING N N 54 
2XI C07 H24 SING N N 55 
2XI C09 H25 SING N N 56 
2XI C11 H26 SING N N 57 
2XI C16 H27 SING N N 58 
2XI C23 H28 SING N N 59 
2XI C27 H29 SING N N 60 
2XI C27 H30 SING N N 61 
2XI C27 H31 SING N N 62 
2XI N05 H32 SING N N 63 
2XI O28 H33 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2XI InChI            InChI                1.03  "InChI=1S/C24H33N3O3/c1-16(28)22(30)27(19-12-10-18(11-13-19)23(2,3)4)20(17-9-8-14-25-15-17)21(29)26-24(5,6)7/h8-16,20,28H,1-7H3,(H,26,29)/t16-,20-/m1/s1" 
2XI InChIKey         InChI                1.03  VNQJAMKKDIWKCG-OXQOHEQNSA-N                                                                                                                               
2XI SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)C(=O)N([C@@H](C(=O)NC(C)(C)C)c1cccnc1)c2ccc(cc2)C(C)(C)C"                                                                                      
2XI SMILES           CACTVS               3.385 "C[CH](O)C(=O)N([CH](C(=O)NC(C)(C)C)c1cccnc1)c2ccc(cc2)C(C)(C)C"                                                                                          
2XI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)N(c1ccc(cc1)C(C)(C)C)[C@H](c2cccnc2)C(=O)NC(C)(C)C)O"                                                                                        
2XI SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(=O)N(c1ccc(cc1)C(C)(C)C)C(c2cccnc2)C(=O)NC(C)(C)C)O"                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           2XI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-~{N}-[(1~{R})-2-(~{tert}-butylamino)-2-oxidanylidene-1-pyridin-3-yl-ethyl]-~{N}-(4-~{tert}-butylphenyl)-2-oxidanyl-propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2XI "Create component" 2021-07-09 PDBJ 
2XI "Initial release"  2021-07-21 RCSB 
2XI "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            2XI 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C26 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
