data_1YI
# 
_chem_comp.id                                    1YI 
_chem_comp.name                                  "N-[2-(dimethylamino)ethyl]-2-methyl-2-[4-[4-[[2-methyl-5-[(2S,3R,4R,5S,6R)-6-methylsulfanyl-3,4,5-tris(oxidanyl)oxan-2-yl]phenyl]methyl]phenyl]butanoylamino]propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H47 N3 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         LX2761 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-26 
_chem_comp.pdbx_modified_date                    2022-11-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        601.797 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1YI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7WMV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1YI C13 C1  C 0 1 N N R 106.585 114.218 112.698 -7.168  2.713  0.735  C13 1YI 1  
1YI C15 C2  C 0 1 N N R 106.050 112.633 114.547 -8.979  1.005  0.558  C15 1YI 2  
1YI C17 C3  C 0 1 Y N N 104.024 111.140 110.766 -4.801  -1.333 0.249  C17 1YI 3  
1YI C20 C4  C 0 1 Y N N 103.626 108.779 110.527 -4.208  -2.465 -1.775 C20 1YI 4  
1YI C21 C5  C 0 1 Y N N 104.626 108.507 111.437 -5.236  -1.821 -2.437 C21 1YI 5  
1YI C22 C6  C 0 1 N N N 102.234 110.466 109.205 -2.880  -2.936 0.294  C22 1YI 6  
1YI C24 C7  C 0 1 Y N N 100.911 110.073 109.846 -1.591  -2.180 0.100  C24 1YI 7  
1YI C26 C8  C 0 1 N N N 92.545  108.407 114.139 7.950   -0.891 1.489  C26 1YI 8  
1YI C28 C9  C 0 1 Y N N 100.141 109.053 109.319 -0.773  -2.471 -0.975 C28 1YI 9  
1YI C11 C10 C 0 1 N N R 105.694 113.343 111.806 -6.235  1.725  0.029  C11 1YI 10 
1YI C12 C11 C 0 1 N N S 105.840 111.929 112.354 -6.700  0.296  0.324  C12 1YI 11 
1YI C14 C12 C 0 1 N N S 105.990 114.087 114.099 -8.606  2.462  0.272  C14 1YI 12 
1YI C16 C13 C 0 1 Y N N 105.029 110.853 111.663 -5.823  -0.681 -0.415 C16 1YI 13 
1YI C18 C14 C 0 1 Y N N 105.319 109.548 112.006 -6.041  -0.925 -1.759 C18 1YI 14 
1YI C19 C15 C 0 1 Y N N 103.333 110.096 110.188 -3.993  -2.225 -0.431 C19 1YI 15 
1YI C23 C16 C 0 1 N N N 104.801 110.649 116.200 -11.029 -0.958 0.635  C23 1YI 16 
1YI C25 C17 C 0 1 N N N 102.892 107.590 109.921 -3.331  -3.443 -2.515 C25 1YI 17 
1YI C27 C18 C 0 1 Y N N 100.517 110.745 110.979 -1.229  -1.190 0.995  C27 1YI 18 
1YI C29 C19 C 0 1 Y N N 98.556  109.383 111.080 0.774   -0.792 -0.254 C29 1YI 19 
1YI C30 C20 C 0 1 N N N 97.245  109.006 111.756 2.063   -0.035 -0.448 C30 1YI 20 
1YI C31 C21 C 0 1 N N N 97.108  107.503 111.935 3.194   -0.757 0.289  C31 1YI 21 
1YI C32 C22 C 0 1 Y N N 99.328  110.410 111.602 -0.047  -0.496 0.818  C32 1YI 22 
1YI C33 C23 C 0 1 Y N N 98.954  108.713 109.937 0.410   -1.777 -1.153 C33 1YI 23 
1YI C34 C24 C 0 1 N N N 96.107  107.127 113.039 4.502   0.012  0.092  C34 1YI 24 
1YI C35 C25 C 0 1 N N N 94.780  107.913 113.042 5.616   -0.699 0.817  C35 1YI 25 
1YI C36 C26 C 0 1 N N N 91.696  107.883 115.298 9.239   -0.135 1.295  C36 1YI 26 
1YI C37 C27 C 0 1 N N N 92.889  109.868 114.425 8.101   -2.307 0.929  C37 1YI 27 
1YI C38 C28 C 0 1 N N N 91.711  108.277 112.861 7.621   -0.965 2.981  C38 1YI 28 
1YI N8  N1  N 0 1 N N N 93.804  107.673 114.094 6.867   -0.200 0.784  N8  1YI 29 
1YI N9  N2  N 0 1 N N N 90.968  106.633 115.149 9.483   0.492  0.127  N9  1YI 30 
1YI O2  O1  O 0 1 N N N 105.306 111.885 113.648 -8.055  0.139  -0.103 O2  1YI 31 
1YI O3  O2  O 0 1 N N N 106.050 113.444 110.457 -4.901  1.901  0.507  O3  1YI 32 
1YI O4  O3  O 0 1 N N N 106.560 115.552 112.284 -6.787  4.051  0.407  O4  1YI 33 
1YI O5  O4  O 0 1 N N N 106.634 114.878 115.050 -9.494  3.330  0.979  O5  1YI 34 
1YI O6  O5  O 0 1 N N N 94.512  108.703 112.208 5.386   -1.720 1.431  O6  1YI 35 
1YI O7  O6  O 0 1 N N N 91.625  108.487 116.316 10.056  -0.090 2.190  O7  1YI 36 
1YI S1  S1  S 0 1 N N N 105.267 112.404 116.160 -10.656 0.679  -0.052 S1  1YI 37 
1YI H1  H1  H 0 1 N N N 107.609 113.817 112.696 -7.102  2.569  1.814  H1  1YI 38 
1YI H2  H2  H 0 1 N N N 107.092 112.292 114.634 -8.942  0.825  1.633  H2  1YI 39 
1YI H3  H3  H 0 1 N N N 103.782 112.163 110.520 -4.632  -1.142 1.298  H3  1YI 40 
1YI H4  H4  H 0 1 N N N 104.862 107.486 111.700 -5.404  -2.009 -3.487 H4  1YI 41 
1YI H5  H5  H 0 1 N N N 102.373 109.920 108.260 -2.772  -3.945 -0.106 H5  1YI 42 
1YI H6  H6  H 0 1 N N N 102.252 111.548 109.009 -3.114  -2.989 1.357  H6  1YI 43 
1YI H7  H7  H 0 1 N N N 100.465 108.527 108.433 -1.057  -3.241 -1.677 H7  1YI 44 
1YI H8  H8  H 0 1 N N N 104.650 113.662 111.945 -6.264  1.902  -1.046 H8  1YI 45 
1YI H9  H9  H 0 1 N N N 106.903 111.645 112.353 -6.633  0.106  1.396  H9  1YI 46 
1YI H10 H10 H 0 1 N N N 104.930 114.376 114.040 -8.683  2.654  -0.798 H10 1YI 47 
1YI H11 H11 H 0 1 N N N 106.097 109.344 112.727 -6.839  -0.415 -2.278 H11 1YI 48 
1YI H12 H12 H 0 1 N N N 104.312 110.421 117.159 -12.030 -1.262 0.328  H12 1YI 49 
1YI H13 H13 H 0 1 N N N 104.106 110.435 115.374 -10.301 -1.681 0.267  H13 1YI 50 
1YI H14 H14 H 0 1 N N N 105.702 110.028 116.091 -10.980 -0.915 1.723  H14 1YI 51 
1YI H15 H15 H 0 1 N N N 103.410 107.266 109.006 -2.480  -2.914 -2.944 H15 1YI 52 
1YI H16 H16 H 0 1 N N N 102.874 106.762 110.645 -2.974  -4.206 -1.824 H16 1YI 53 
1YI H17 H17 H 0 1 N N N 101.861 107.883 109.674 -3.905  -3.914 -3.312 H17 1YI 54 
1YI H18 H18 H 0 1 N N N 101.135 111.534 111.382 -1.870  -0.959 1.833  H18 1YI 55 
1YI H19 H19 H 0 1 N N N 97.204  109.487 112.745 2.297   0.017  -1.511 H19 1YI 56 
1YI H20 H20 H 0 1 N N N 96.410  109.368 111.138 1.955   0.973  -0.049 H20 1YI 57 
1YI H21 H21 H 0 1 N N N 96.766  107.065 110.986 2.959   -0.809 1.352  H21 1YI 58 
1YI H22 H22 H 0 1 N N N 98.093  107.088 112.196 3.301   -1.765 -0.110 H22 1YI 59 
1YI H23 H23 H 0 1 N N N 99.005  110.942 112.485 0.235   0.277  1.517  H23 1YI 60 
1YI H24 H24 H 0 1 N N N 98.338  107.926 109.529 1.049   -2.006 -1.993 H24 1YI 61 
1YI H25 H25 H 0 1 N N N 95.866  106.060 112.926 4.736   0.064  -0.971 H25 1YI 62 
1YI H26 H26 H 0 1 N N N 96.598  107.291 114.009 4.394   1.020  0.491  H26 1YI 63 
1YI H27 H27 H 0 1 N N N 93.487  109.931 115.346 8.907   -2.821 1.454  H27 1YI 64 
1YI H28 H28 H 0 1 N N N 93.467  110.280 113.584 7.169   -2.855 1.069  H28 1YI 65 
1YI H29 H29 H 0 1 N N N 91.961  110.445 114.550 8.335   -2.255 -0.134 H29 1YI 66 
1YI H30 H30 H 0 1 N N N 90.781  108.854 112.969 8.427   -1.479 3.506  H30 1YI 67 
1YI H31 H31 H 0 1 N N N 92.286  108.665 112.007 7.514   0.043  3.380  H31 1YI 68 
1YI H32 H32 H 0 1 N N N 91.467  107.218 112.689 6.689   -1.513 3.121  H32 1YI 69 
1YI H33 H33 H 0 1 N N N 94.000  106.992 114.799 7.051   0.616  0.293  H33 1YI 70 
1YI H34 H34 H 0 1 N N N 90.969  106.178 116.040 8.830   0.456  -0.589 H34 1YI 71 
1YI H36 H36 H 0 1 N N N 105.941 114.342 110.167 -4.542  2.786  0.353  H36 1YI 72 
1YI H37 H37 H 0 1 N N N 107.118 116.071 112.851 -7.340  4.729  0.817  H37 1YI 73 
1YI H38 H38 H 0 1 N N N 106.222 114.755 115.897 -10.424 3.225  0.735  H38 1YI 74 
1YI C39 C39 C 0 1 N N N ?       ?       ?       10.736  1.228  -0.061 C39 1YI 75 
1YI C40 C40 C 0 1 N N N ?       ?       ?       10.762  1.840  -1.462 C40 1YI 76 
1YI N41 N41 N 0 1 N N N ?       ?       ?       12.019  2.578  -1.651 N41 1YI 77 
1YI C42 C42 C 0 1 N N N ?       ?       ?       13.170  1.666  -1.647 C42 1YI 78 
1YI C43 C43 C 0 1 N N N ?       ?       ?       11.982  3.374  -2.886 C43 1YI 79 
1YI H35 H35 H 0 1 N N N ?       ?       ?       10.807  2.021  0.684  H35 1YI 80 
1YI H39 H39 H 0 1 N N N ?       ?       ?       11.579  0.546  0.054  H39 1YI 81 
1YI H40 H40 H 0 1 N N N ?       ?       ?       10.691  1.047  -2.207 H40 1YI 82 
1YI H41 H41 H 0 1 N N N ?       ?       ?       9.920   2.523  -1.577 H41 1YI 83 
1YI H42 H42 H 0 1 N N N ?       ?       ?       13.064  0.943  -2.456 H42 1YI 84 
1YI H43 H43 H 0 1 N N N ?       ?       ?       14.087  2.239  -1.788 H43 1YI 85 
1YI H44 H44 H 0 1 N N N ?       ?       ?       13.214  1.140  -0.693 H44 1YI 86 
1YI H45 H45 H 0 1 N N N ?       ?       ?       11.161  4.089  -2.833 H45 1YI 87 
1YI H46 H46 H 0 1 N N N ?       ?       ?       12.924  3.910  -3.001 H46 1YI 88 
1YI H47 H47 H 0 1 N N N ?       ?       ?       11.833  2.713  -3.740 H47 1YI 89 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1YI C22 C24 SING N N 1  
1YI C22 C19 SING N N 2  
1YI C28 C24 DOUB Y N 3  
1YI C28 C33 SING Y N 4  
1YI C24 C27 SING Y N 5  
1YI C25 C20 SING N N 6  
1YI C33 C29 DOUB Y N 7  
1YI C19 C20 DOUB Y N 8  
1YI C19 C17 SING Y N 9  
1YI O3  C11 SING N N 10 
1YI C20 C21 SING Y N 11 
1YI C17 C16 DOUB Y N 12 
1YI C27 C32 DOUB Y N 13 
1YI C29 C32 SING Y N 14 
1YI C29 C30 SING N N 15 
1YI C21 C18 DOUB Y N 16 
1YI C16 C18 SING Y N 17 
1YI C16 C12 SING N N 18 
1YI C30 C31 SING N N 19 
1YI C11 C12 SING N N 20 
1YI C11 C13 SING N N 21 
1YI C31 C34 SING N N 22 
1YI O6  C35 DOUB N N 23 
1YI O4  C13 SING N N 24 
1YI C12 O2  SING N N 25 
1YI C13 C14 SING N N 26 
1YI C38 C26 SING N N 27 
1YI C34 C35 SING N N 28 
1YI C35 N8  SING N N 29 
1YI O2  C15 SING N N 30 
1YI N8  C26 SING N N 31 
1YI C14 C15 SING N N 32 
1YI C14 O5  SING N N 33 
1YI C26 C37 SING N N 34 
1YI C26 C36 SING N N 35 
1YI C15 S1  SING N N 36 
1YI N9  C36 SING N N 37 
1YI C36 O7  DOUB N N 38 
1YI S1  C23 SING N N 39 
1YI C13 H1  SING N N 40 
1YI C15 H2  SING N N 41 
1YI C17 H3  SING N N 42 
1YI C21 H4  SING N N 43 
1YI C22 H5  SING N N 44 
1YI C22 H6  SING N N 45 
1YI C28 H7  SING N N 46 
1YI C11 H8  SING N N 47 
1YI C12 H9  SING N N 48 
1YI C14 H10 SING N N 49 
1YI C18 H11 SING N N 50 
1YI C23 H12 SING N N 51 
1YI C23 H13 SING N N 52 
1YI C23 H14 SING N N 53 
1YI C25 H15 SING N N 54 
1YI C25 H16 SING N N 55 
1YI C25 H17 SING N N 56 
1YI C27 H18 SING N N 57 
1YI C30 H19 SING N N 58 
1YI C30 H20 SING N N 59 
1YI C31 H21 SING N N 60 
1YI C31 H22 SING N N 61 
1YI C32 H23 SING N N 62 
1YI C33 H24 SING N N 63 
1YI C34 H25 SING N N 64 
1YI C34 H26 SING N N 65 
1YI C37 H27 SING N N 66 
1YI C37 H28 SING N N 67 
1YI C37 H29 SING N N 68 
1YI C38 H30 SING N N 69 
1YI C38 H31 SING N N 70 
1YI C38 H32 SING N N 71 
1YI N8  H33 SING N N 72 
1YI N9  H34 SING N N 73 
1YI O3  H36 SING N N 74 
1YI O4  H37 SING N N 75 
1YI O5  H38 SING N N 76 
1YI N9  C39 SING N N 77 
1YI C39 C40 SING N N 78 
1YI C40 N41 SING N N 79 
1YI N41 C42 SING N N 80 
1YI N41 C43 SING N N 81 
1YI C39 H35 SING N N 82 
1YI C39 H39 SING N N 83 
1YI C40 H40 SING N N 84 
1YI C40 H41 SING N N 85 
1YI C42 H42 SING N N 86 
1YI C42 H43 SING N N 87 
1YI C42 H44 SING N N 88 
1YI C43 H45 SING N N 89 
1YI C43 H46 SING N N 90 
1YI C43 H47 SING N N 91 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1YI InChI            InChI                1.03  "InChI=1S/C32H47N3O6S/c1-20-10-15-23(29-27(38)26(37)28(39)30(41-29)42-6)19-24(20)18-22-13-11-21(12-14-22)8-7-9-25(36)34-32(2,3)31(40)33-16-17-35(4)5/h10-15,19,26-30,37-39H,7-9,16-18H2,1-6H3,(H,33,40)(H,34,36)/t26-,27-,28+,29+,30-/m1/s1" 
1YI InChIKey         InChI                1.03  BNPZTRDIESRGTC-IXYVTWBDSA-N                                                                                                                                                                                                                  
1YI SMILES_CANONICAL CACTVS               3.385 "CS[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)c2ccc(C)c(Cc3ccc(CCCC(=O)NC(C)(C)C(=O)NCCN(C)C)cc3)c2"                                                                                                                                             
1YI SMILES           CACTVS               3.385 "CS[CH]1O[CH]([CH](O)[CH](O)[CH]1O)c2ccc(C)c(Cc3ccc(CCCC(=O)NC(C)(C)C(=O)NCCN(C)C)cc3)c2"                                                                                                                                                    
1YI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1Cc2ccc(cc2)CCCC(=O)NC(C)(C)C(=O)NCCN(C)C)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)SC)O)O)O"                                                                                                                                             
1YI SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1Cc2ccc(cc2)CCCC(=O)NC(C)(C)C(=O)NCCN(C)C)C3C(C(C(C(O3)SC)O)O)O"                                                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           1YI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[2-(dimethylamino)ethyl]-2-methyl-2-[4-[4-[[2-methyl-5-[(2~{S},3~{R},4~{R},5~{S},6~{R})-6-methylsulfanyl-3,4,5-tris(oxidanyl)oxan-2-yl]phenyl]methyl]phenyl]butanoylamino]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1YI "Create component" 2022-01-26 PDBJ 
1YI "Initial release"  2022-11-16 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      1YI 
_pdbx_chem_comp_synonyms.name         LX2761 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
