data_05I
#

_chem_comp.id                                   05I
_chem_comp.name                                 "4-[(1~{S},5~{R})-3,8-diazabicyclo[3.2.1]octan-3-yl]-7-(8-methylnaphthalen-1-yl)-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H38 N6 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-06-01
_chem_comp.pdbx_modified_date                   2021-12-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       498.662
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    05I
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7EWB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
05I  C4   C1   C  0  1  Y  N  N  -2.966  -12.412  11.556  -0.047   0.162   0.644  C4   05I   1  
05I  C5   C2   C  0  1  Y  N  N  -2.867  -13.054  10.324   0.064  -1.166   0.979  C5   05I   2  
05I  C6   C3   C  0  1  Y  N  N  -1.952  -12.501   9.390  -1.081  -1.968   0.932  C6   05I   3  
05I  N1   N1   N  0  1  Y  N  N  -1.245  -11.395   9.718  -2.235  -1.422   0.562  N1   05I   4  
05I  N3   N2   N  0  1  Y  N  N  -2.232  -11.336  11.810  -1.233   0.640   0.282  N3   05I   5  
05I  C2   C4   C  0  1  Y  N  N  -1.380  -10.830  10.917  -2.300  -0.140   0.244  C2   05I   6  
05I  CAH  C5   C  0  1  N  N  N  -3.647  -14.210  10.061   1.376  -1.778   1.388  CAH  05I   7  
05I  CAI  C6   C  0  1  N  N  N  -4.900  -14.384  10.920   2.368  -0.676   1.764  CAI  05I   8  
05I  CAK  C7   C  0  1  N  N  N  -3.806  -12.814  12.588   1.136   1.092   0.681  CAK  05I   9  
05I  CAM  C8   C  0  1  N  N  N   0.198   -9.215  10.298  -3.507   1.777  -0.465  CAM  05I  10  
05I  CAN  C9   C  0  1  N  N  N  -1.311  -11.996   7.116  -2.130  -4.058   0.670  CAN  05I  11  
05I  CAO  C10  C  0  1  N  N  R  -0.002  -12.420   6.475  -1.939  -4.112  -0.855  CAO  05I  12  
05I  CAQ  C11  C  0  1  N  N  S  -0.165  -14.619   7.158   0.375  -3.944  -0.649  CAQ  05I  13  
05I  CAR  C12  C  0  1  N  N  N  -1.501  -14.412   7.804   0.286  -3.883   0.885  CAR  05I  14  
05I  CAS  C13  C  0  1  Y  N  N  -5.310  -14.443  13.376   3.489   1.169   0.809  CAS  05I  15  
05I  CAT  C14  C  0  1  Y  N  N  -6.606  -13.938  13.383   3.655   1.936   1.942  CAT  05I  16  
05I  CAU  C15  C  0  1  Y  N  N  -7.493  -14.188  14.416   4.755   2.779   2.077  CAU  05I  17  
05I  CAV  C16  C  0  1  Y  N  N  -7.047  -14.940  15.481   5.695   2.870   1.096  CAV  05I  18  
05I  CAW  C17  C  0  1  Y  N  N  -5.753  -15.437  15.521   5.564   2.105  -0.075  CAW  05I  19  
05I  CAX  C18  C  0  1  Y  N  N  -4.831  -15.196  14.483   4.449   1.243  -0.224  CAX  05I  20  
05I  CAY  C19  C  0  1  Y  N  N  -5.420  -16.186  16.641   6.518   2.178  -1.104  CAY  05I  21  
05I  CAZ  C20  C  0  1  Y  N  N  -4.151  -16.719  16.776   6.360   1.423  -2.226  CAZ  05I  22  
05I  CBA  C21  C  0  1  Y  N  N  -3.222  -16.494  15.774   5.264   0.576  -2.371  CBA  05I  23  
05I  CBB  C22  C  0  1  Y  N  N  -3.539  -15.758  14.636   4.319   0.480  -1.395  CBB  05I  24  
05I  CBC  C23  C  0  1  N  N  N  -2.480  -15.648  13.731   3.139  -0.441  -1.571  CBC  05I  25  
05I  CBD  C24  C  0  1  N  N  S   0.708   -7.877  10.818  -4.926   2.189  -0.862  CBD  05I  26  
05I  CBF  C25  C  0  1  N  N  N  -0.334   -6.932  12.688  -6.360   3.439   0.598  CBF  05I  27  
05I  CBG  C26  C  0  1  N  N  N   1.163   -6.910  12.926  -6.270   4.201  -0.748  CBG  05I  28  
05I  CBH  C27  C  0  1  N  N  N   1.498   -8.124  12.116  -4.936   3.661  -1.326  CBH  05I  29  
05I  CBI  C28  C  0  1  N  N  N  -0.094   -5.629  10.709  -6.905   1.133   0.062  CBI  05I  30  
05I  CBJ  C29  C  0  1  N  N  N   0.910  -14.024   8.071  -0.071  -2.569  -1.199  CBJ  05I  31  
05I  CBK  C30  C  0  1  N  N  N   1.076  -12.565   7.539  -1.604  -2.680  -1.336  CBK  05I  32  
05I  NAG  N3   N  0  1  N  N  N  -1.685  -12.973   8.156  -1.014  -3.311   1.265  NAG  05I  33  
05I  NAJ  N4   N  0  1  N  N  N  -4.624  -14.011  12.313   2.388   0.325   0.686  NAJ  05I  34  
05I  NAP  N5   N  0  1  N  N  N  -0.033  -13.796   5.940  -0.688  -4.878  -1.108  NAP  05I  35  
05I  NBE  N6   N  0  1  N  N  N  -0.400   -6.980  11.208  -5.820   2.093   0.306  NBE  05I  36  
05I  OAL  O1   O  0  1  N  N  N  -0.679   -9.733  11.294  -3.489   0.388  -0.132  OAL  05I  37  
05I  H1   H1   H  0  1  N  N  N  -3.964  -14.170   9.008   1.219  -2.432   2.245  H1   05I  38  
05I  H2   H2   H  0  1  N  N  N  -3.007  -15.091  10.218   1.778  -2.360   0.558  H2   05I  39  
05I  H3   H3   H  0  1  N  N  N  -5.701  -13.742  10.525   2.056  -0.205   2.696  H3   05I  40  
05I  H4   H4   H  0  1  N  N  N  -5.221  -15.436  10.884   3.363  -1.105   1.884  H4   05I  41  
05I  H5   H5   H  0  1  N  N  N  -3.183  -13.025  13.469   1.114   1.738  -0.196  H5   05I  42  
05I  H6   H6   H  0  1  N  N  N  -4.489  -11.981  12.813   1.086   1.704   1.581  H6   05I  43  
05I  H7   H7   H  0  1  N  N  N  -0.345   -9.072   9.352  -2.829   1.959  -1.300  H7   05I  44  
05I  H8   H8   H  0  1  N  N  N   1.039   -9.905  10.138  -3.186   2.362   0.397  H8   05I  45  
05I  H9   H9   H  0  1  N  N  N  -1.192  -11.002   7.572  -3.070  -3.557   0.902  H9   05I  46  
05I  H10  H10  H  0  1  N  N  N  -2.099  -11.956   6.350  -2.148  -5.070   1.073  H10  05I  47  
05I  H11  H11  H  0  1  N  N  N   0.307  -11.698   5.705  -2.806  -4.530  -1.367  H11  05I  48  
05I  H12  H12  H  0  1  N  N  N   0.028  -15.683   6.959   1.370  -4.227  -0.994  H12  05I  49  
05I  H13  H13  H  0  1  N  N  N  -2.294  -14.720   7.106   0.376  -4.888   1.297  H13  05I  50  
05I  H14  H14  H  0  1  N  N  N  -1.561  -15.020   8.718   1.088  -3.255   1.273  H14  05I  51  
05I  H15  H15  H  0  1  N  N  N  -6.932  -13.329  12.553   2.923   1.883   2.734  H15  05I  52  
05I  H16  H16  H  0  1  N  N  N  -8.503  -13.806  14.388   4.864   3.371   2.974  H16  05I  53  
05I  H17  H17  H  0  1  N  N  N  -7.719  -15.147  16.301   6.541   3.530   1.219  H17  05I  54  
05I  H18  H18  H  0  1  N  N  N  -6.157  -16.354  17.412   7.373   2.831  -1.005  H18  05I  55  
05I  H19  H19  H  0  1  N  N  N  -3.889  -17.301  17.648   7.095   1.482  -3.015  H19  05I  56  
05I  H20  H20  H  0  1  N  N  N  -2.227  -16.900  15.878   5.161  -0.012  -3.270  H20  05I  57  
05I  H21  H21  H  0  1  N  N  N  -1.886  -14.753  13.968   2.282   0.130  -1.928  H21  05I  58  
05I  H22  H22  H  0  1  N  N  N  -1.842  -16.541  13.803   3.388  -1.216  -2.296  H22  05I  59  
05I  H23  H23  H  0  1  N  N  N  -2.878  -15.563  12.709   2.894  -0.904  -0.615  H23  05I  60  
05I  H24  H24  H  0  1  N  N  N   1.355   -7.399  10.068  -5.290   1.543  -1.661  H24  05I  61  
05I  H25  H25  H  0  1  N  N  N  -0.816   -6.025  13.082  -5.754   3.935   1.356  H25  05I  62  
05I  H26  H26  H  0  1  N  N  N  -0.799   -7.821  13.140  -7.397   3.371   0.927  H26  05I  63  
05I  H27  H27  H  0  1  N  N  N   1.421   -7.029  13.989  -7.108   3.946  -1.398  H27  05I  64  
05I  H28  H28  H  0  1  N  N  N   1.638   -5.999  12.533  -6.219   5.277  -0.585  H28  05I  65  
05I  H29  H29  H  0  1  N  N  N   1.163   -9.043  12.618  -4.087   4.202  -0.907  H29  05I  66  
05I  H30  H30  H  0  1  N  N  N   2.578   -8.187  11.919  -4.933   3.722  -2.414  H30  05I  67  
05I  H31  H31  H  0  1  N  N  N  -0.906   -4.942  10.988  -6.480   0.148  -0.135  H31  05I  68  
05I  H32  H32  H  0  1  N  N  N   0.850   -5.280  11.153  -7.549   1.082   0.939  H32  05I  69  
05I  H33  H33  H  0  1  N  N  N   0.003   -5.656   9.614  -7.489   1.456  -0.800  H33  05I  70  
05I  H34  H34  H  0  1  N  N  N   0.579  -14.024   9.120   0.191  -1.776  -0.499  H34  05I  71  
05I  H35  H35  H  0  1  N  N  N   1.853  -14.584   7.984   0.386  -2.382  -2.171  H35  05I  72  
05I  H36  H36  H  0  1  N  N  N   2.075  -12.422   7.102  -1.903  -2.549  -2.376  H36  05I  73  
05I  H37  H37  H  0  1  N  N  N   0.923  -11.837   8.349  -2.096  -1.942  -0.703  H37  05I  74  
05I  H38  H38  H  0  1  N  N  N  -0.815  -13.928   5.330  -0.674  -5.734  -0.573  H38  05I  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
05I  NAP  CAO  SING  N  N   1  
05I  NAP  CAQ  SING  N  N   2  
05I  CAO  CAN  SING  N  N   3  
05I  CAO  CBK  SING  N  N   4  
05I  CAN  NAG  SING  N  N   5  
05I  CAQ  CAR  SING  N  N   6  
05I  CAQ  CBJ  SING  N  N   7  
05I  CBK  CBJ  SING  N  N   8  
05I  CAR  NAG  SING  N  N   9  
05I  NAG  C6   SING  N  N  10  
05I  C6   N1   DOUB  Y  N  11  
05I  C6   C5   SING  Y  N  12  
05I  N1   C2   SING  Y  N  13  
05I  CAH  C5   SING  N  N  14  
05I  CAH  CAI  SING  N  N  15  
05I  CAM  CBD  SING  N  N  16  
05I  CAM  OAL  SING  N  N  17  
05I  C5   C4   DOUB  Y  N  18  
05I  CBI  NBE  SING  N  N  19  
05I  CBD  NBE  SING  N  N  20  
05I  CBD  CBH  SING  N  N  21  
05I  C2   OAL  SING  N  N  22  
05I  C2   N3   DOUB  Y  N  23  
05I  CAI  NAJ  SING  N  N  24  
05I  NBE  CBF  SING  N  N  25  
05I  C4   N3   SING  Y  N  26  
05I  C4   CAK  SING  N  N  27  
05I  CBH  CBG  SING  N  N  28  
05I  NAJ  CAK  SING  N  N  29  
05I  NAJ  CAS  SING  N  N  30  
05I  CBF  CBG  SING  N  N  31  
05I  CAS  CAT  DOUB  Y  N  32  
05I  CAS  CAX  SING  Y  N  33  
05I  CAT  CAU  SING  Y  N  34  
05I  CBC  CBB  SING  N  N  35  
05I  CAU  CAV  DOUB  Y  N  36  
05I  CAX  CBB  DOUB  Y  N  37  
05I  CAX  CAW  SING  Y  N  38  
05I  CBB  CBA  SING  Y  N  39  
05I  CAV  CAW  SING  Y  N  40  
05I  CAW  CAY  DOUB  Y  N  41  
05I  CBA  CAZ  DOUB  Y  N  42  
05I  CAY  CAZ  SING  Y  N  43  
05I  CAH  H1   SING  N  N  44  
05I  CAH  H2   SING  N  N  45  
05I  CAI  H3   SING  N  N  46  
05I  CAI  H4   SING  N  N  47  
05I  CAK  H5   SING  N  N  48  
05I  CAK  H6   SING  N  N  49  
05I  CAM  H7   SING  N  N  50  
05I  CAM  H8   SING  N  N  51  
05I  CAN  H9   SING  N  N  52  
05I  CAN  H10  SING  N  N  53  
05I  CAO  H11  SING  N  N  54  
05I  CAQ  H12  SING  N  N  55  
05I  CAR  H13  SING  N  N  56  
05I  CAR  H14  SING  N  N  57  
05I  CAT  H15  SING  N  N  58  
05I  CAU  H16  SING  N  N  59  
05I  CAV  H17  SING  N  N  60  
05I  CAY  H18  SING  N  N  61  
05I  CAZ  H19  SING  N  N  62  
05I  CBA  H20  SING  N  N  63  
05I  CBC  H21  SING  N  N  64  
05I  CBC  H22  SING  N  N  65  
05I  CBC  H23  SING  N  N  66  
05I  CBD  H24  SING  N  N  67  
05I  CBF  H25  SING  N  N  68  
05I  CBF  H26  SING  N  N  69  
05I  CBG  H27  SING  N  N  70  
05I  CBG  H28  SING  N  N  71  
05I  CBH  H29  SING  N  N  72  
05I  CBH  H30  SING  N  N  73  
05I  CBI  H31  SING  N  N  74  
05I  CBI  H32  SING  N  N  75  
05I  CBI  H33  SING  N  N  76  
05I  CBJ  H34  SING  N  N  77  
05I  CBJ  H35  SING  N  N  78  
05I  CBK  H36  SING  N  N  79  
05I  CBK  H37  SING  N  N  80  
05I  NAP  H38  SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
05I  InChI             InChI                 1.03   "InChI=1S/C30H38N6O/c1-20-6-3-7-21-8-4-10-27(28(20)21)35-15-13-25-26(18-35)32-30(37-19-24-9-5-14-34(24)2)33-29(25)36-16-22-11-12-23(17-36)31-22/h3-4,6-8,10,22-24,31H,5,9,11-19H2,1-2H3/t22-,23+,24-/m0/s1"  
05I  InChIKey          InChI                 1.03   KIWVGCSJQTTZJO-VXNXHJTFSA-N  
05I  SMILES_CANONICAL  CACTVS                3.385  "CN1CCC[C@H]1COc2nc3CN(CCc3c(n2)N4C[C@@H]5CC[C@H](C4)N5)c6cccc7cccc(C)c67"  
05I  SMILES            CACTVS                3.385  "CN1CCC[CH]1COc2nc3CN(CCc3c(n2)N4C[CH]5CC[CH](C4)N5)c6cccc7cccc(C)c67"  
05I  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1cccc2c1c(ccc2)N3CCc4c(nc(nc4N5C[C@H]6CC[C@@H](C5)N6)OC[C@@H]7CCCN7C)C3"  
05I  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1cccc2c1c(ccc2)N3CCc4c(nc(nc4N5CC6CCC(C5)N6)OCC7CCCN7C)C3"  
#
_pdbx_chem_comp_identifier.comp_id          05I
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-[(1~{S},5~{R})-3,8-diazabicyclo[3.2.1]octan-3-yl]-7-(8-methylnaphthalen-1-yl)-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidine"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
05I  "Create component"  2021-06-01  PDBJ  
05I  "Initial release"   2021-12-29  RCSB  
##
