data_YXH
# 
_chem_comp.id                                    YXH 
_chem_comp.name                                  "1-(1H-benzimidazol-2-yl)methanamine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H9 N3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-22 
_chem_comp.pdbx_modified_date                    2023-07-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        147.177 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YXH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G8E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YXH C10 C1  C 0 1 Y N N 7.973  -19.715 33.014 0.571  -0.693 0.095  C10 YXH 1  
YXH N01 N1  N 0 1 N N N 3.652  -18.085 33.348 -3.612 -0.143 -0.835 N01 YXH 2  
YXH C02 C2  C 0 1 N N N 4.509  -19.028 34.045 -2.973 -0.000 0.480  C02 YXH 3  
YXH C03 C3  C 0 1 Y N N 5.910  -19.098 33.416 -1.475 0.006  0.313  C03 YXH 4  
YXH N04 N2  N 0 1 Y N N 6.363  -18.305 32.443 -0.707 1.124  0.211  N04 YXH 5  
YXH C05 C4  C 0 1 Y N N 7.653  -18.667 32.173 0.603  0.711  0.071  C05 YXH 6  
YXH C06 C5  C 0 1 Y N N 8.623  -18.170 31.251 1.815  1.372  -0.073 C06 YXH 7  
YXH C07 C6  C 0 1 Y N N 9.880  -18.767 31.202 2.980  0.645  -0.192 C07 YXH 8  
YXH C08 C7  C 0 1 Y N N 10.202 -19.832 32.055 2.948  -0.742 -0.169 C08 YXH 9  
YXH C09 C8  C 0 1 Y N N 9.252  -20.333 32.936 1.764  -1.410 -0.032 C09 YXH 10 
YXH N11 N3  N 0 1 Y N N 6.864  -19.962 33.762 -0.728 -1.057 0.245  N11 YXH 11 
YXH H1  H1  H 0 1 N N N 2.752  -18.067 33.784 -4.617 -0.150 -0.750 H1  YXH 12 
YXH H2  H2  H 0 1 N N N 4.060  -17.173 33.387 -3.307 0.583  -1.466 H2  YXH 13 
YXH H4  H4  H 0 1 N N N 4.605  -18.713 35.095 -3.291 0.936  0.938  H4  YXH 14 
YXH H5  H5  H 0 1 N N N 4.049  -20.026 34.002 -3.264 -0.835 1.117  H5  YXH 15 
YXH H6  H6  H 0 1 N N N 5.850  -17.575 31.991 -1.022 2.041  0.231  H6  YXH 16 
YXH H7  H7  H 0 1 N N N 8.385  -17.342 30.600 1.845  2.452  -0.093 H7  YXH 17 
YXH H8  H8  H 0 1 N N N 10.616 -18.405 30.499 3.923  1.158  -0.305 H8  YXH 18 
YXH H9  H9  H 0 1 N N N 11.191 -20.264 32.027 3.868  -1.300 -0.263 H9  YXH 19 
YXH H10 H10 H 0 1 N N N 9.483  -21.186 33.557 1.751  -2.490 -0.014 H10 YXH 20 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YXH C07 C06 DOUB Y N 1  
YXH C07 C08 SING Y N 2  
YXH C06 C05 SING Y N 3  
YXH C08 C09 DOUB Y N 4  
YXH C05 N04 SING Y N 5  
YXH C05 C10 DOUB Y N 6  
YXH N04 C03 SING Y N 7  
YXH C09 C10 SING Y N 8  
YXH C10 N11 SING Y N 9  
YXH N01 C02 SING N N 10 
YXH C03 N11 DOUB Y N 11 
YXH C03 C02 SING N N 12 
YXH N01 H1  SING N N 13 
YXH N01 H2  SING N N 14 
YXH C02 H4  SING N N 15 
YXH C02 H5  SING N N 16 
YXH N04 H6  SING N N 17 
YXH C06 H7  SING N N 18 
YXH C07 H8  SING N N 19 
YXH C08 H9  SING N N 20 
YXH C09 H10 SING N N 21 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YXH SMILES           ACDLabs              12.01 "NCc1nc2ccccc2[NH]1"                                                 
YXH InChI            InChI                1.06  "InChI=1S/C8H9N3/c9-5-8-10-6-3-1-2-4-7(6)11-8/h1-4H,5,9H2,(H,10,11)" 
YXH InChIKey         InChI                1.06  UCOSRTUSVXHIMK-UHFFFAOYSA-N                                          
YXH SMILES_CANONICAL CACTVS               3.385 "NCc1[nH]c2ccccc2n1"                                                 
YXH SMILES           CACTVS               3.385 "NCc1[nH]c2ccccc2n1"                                                 
YXH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)[nH]c(n2)CN"                                             
YXH SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)[nH]c(n2)CN"                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YXH "SYSTEMATIC NAME" ACDLabs              12.01 "1-(1H-benzimidazol-2-yl)methanamine" 
YXH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1~{H}-benzimidazol-2-ylmethanamine"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YXH "Create component" 2023-06-22 RCSB 
YXH "Initial release"  2023-07-12 RCSB 
# 
