data_YLH
# 
_chem_comp.id                                    YLH 
_chem_comp.name                                  "7-[(1~{S})-1-[5-(3-azanylpropyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H28 F N3 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-19 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        517.570 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YLH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PG2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YLH C01  C1  C 0 1 N N N N N N -22.753 -12.465 15.778 -5.010 -3.427 0.354  C01  YLH 1  
YLH C02  C2  C 0 1 N N S N N N -23.441 -12.000 14.465 -4.078 -2.267 0.710  C02  YLH 2  
YLH C03  C3  C 0 1 Y N N N N N -22.867 -12.820 13.274 -2.769 -2.433 -0.019 C03  YLH 3  
YLH C04  C4  C 0 1 Y N N N N N -22.534 -12.131 12.073 -1.649 -1.709 0.385  C04  YLH 4  
YLH C06  C5  C 0 1 Y N N N N N -22.324 -10.601 10.520 -0.131 -0.358 1.369  C06  YLH 5  
YLH C07  C6  C 0 1 N N N N N N -22.605 -9.288  9.928  0.455  0.621  2.288  C07  YLH 6  
YLH C10  C7  C 0 1 Y N N N N N -21.889 -11.773 9.956  0.542  -1.000 0.344  C10  YLH 7  
YLH C11  C8  C 0 1 Y N N N N N -21.288 -11.924 8.591  1.965  -0.831 -0.024 C11  YLH 8  
YLH C12  C9  C 0 1 Y N N N N N -20.391 -10.972 8.090  2.969  -1.218 0.864  C12  YLH 9  
YLH C13  C10 C 0 1 Y N N N N N -19.830 -11.097 6.843  4.296  -1.058 0.513  C13  YLH 10 
YLH C15  C11 C 0 1 Y N N N N N -20.099 -12.182 6.048  4.629  -0.513 -0.717 C15  YLH 11 
YLH C16  C12 C 0 1 N N N N N N -19.458 -12.292 4.641  6.078  -0.335 -1.092 C16  YLH 12 
YLH C18  C13 C 0 1 N N N N N N -20.793 -9.867  3.696  8.377  1.294  -1.090 C18  YLH 13 
YLH C21  C14 C 0 1 Y N N N N N -20.992 -13.087 6.553  3.637  -0.127 -1.600 C21  YLH 14 
YLH C22  C15 C 0 1 Y N N N N N -21.563 -13.023 7.808  2.308  -0.288 -1.263 C22  YLH 15 
YLH C23  C16 C 0 1 Y N N N N N -21.980 -12.752 10.950 -0.434 -1.883 -0.305 C23  YLH 16 
YLH C24  C17 C 0 1 Y N N N N N -21.714 -14.122 10.995 -0.363 -2.772 -1.380 C24  YLH 17 
YLH C25  C18 C 0 1 Y N N N N N -22.075 -14.819 12.140 -1.475 -3.471 -1.757 C25  YLH 18 
YLH C26  C19 C 0 1 Y N N N N N -22.621 -14.188 13.290 -2.676 -3.304 -1.081 C26  YLH 19 
YLH C28  C20 C 0 1 N N N N N N -25.611 -13.167 15.207 -5.037 0.106  1.221  C28  YLH 20 
YLH C29  C21 C 0 1 N N N N N N -26.927 -12.922 14.828 -5.659 1.168  0.294  C29  YLH 21 
YLH C30  C22 C 0 1 N N N N N N -28.177 -13.630 15.289 -4.832 2.455  0.322  C30  YLH 22 
YLH C31  C23 C 0 1 N N N N N N -29.123 -12.650 15.924 -5.536 3.532  -0.506 C31  YLH 23 
YLH C32  C24 C 0 1 N N N N N N -30.459 -13.399 16.149 -4.710 4.819  -0.478 C32  YLH 24 
YLH C35  C25 C 0 1 N N N N N N -25.669 -11.445 13.684 -5.054 -0.664 -0.933 C35  YLH 25 
YLH F14  F1  F 0 1 N N N N N N -19.060 -10.060 6.394  5.270  -1.432 1.371  F14  YLH 26 
YLH N05  N1  N 0 1 Y N N N N N -22.679 -10.809 11.797 -1.441 -0.789 1.385  N05  YLH 27 
YLH N27  N2  N 0 1 N N N N N N -24.873 -12.176 14.507 -4.700 -1.001 0.314  N27  YLH 28 
YLH N33  N3  N 0 1 N N N N N N -31.392 -12.481 16.785 -5.385 5.853  -1.273 N33  YLH 29 
YLH O08  O1  O 0 1 N N N N N N -23.036 -9.303  8.706  1.627  0.929  2.183  O08  YLH 30 
YLH O09  O2  O 0 1 N N N N N N -22.563 -8.241  10.630 -0.306 1.181  3.252  O09  YLH 31 
YLH O19  O3  O 0 1 N N N N N N -21.856 -12.319 3.483  5.944  2.292  -1.281 O19  YLH 32 
YLH O20  O4  O 0 1 N N N N N N -19.917 -11.646 2.079  6.619  1.337  0.874  O20  YLH 33 
YLH O34  O5  O 0 1 N N N N N N -26.977 -11.859 13.910 -5.607 0.557  -1.028 O34  YLH 34 
YLH O36  O6  O 0 1 N N N N N N -25.391 -10.533 12.968 -4.890 -1.393 -1.891 O36  YLH 35 
YLH S17  S1  S 0 1 N N N N N N -20.570 -11.606 3.377  6.647  1.299  -0.546 S17  YLH 36 
YLH H012 H1  H 0 0 N N N N N N -23.153 -11.890 16.626 -5.190 -3.431 -0.721 H012 YLH 37 
YLH H011 H2  H 0 0 N N N N N N -22.950 -13.536 15.936 -4.547 -4.369 0.648  H011 YLH 38 
YLH H013 H3  H 0 0 N N N N N N -21.668 -12.299 15.702 -5.957 -3.307 0.880  H013 YLH 39 
YLH H021 H4  H 0 0 N N N N N N -23.200 -10.939 14.304 -3.897 -2.263 1.785  H021 YLH 40 
YLH H121 H5  H 0 0 N N N N N N -20.134 -10.118 8.700  2.710  -1.642 1.823  H121 YLH 41 
YLH H162 H6  H 0 0 N N N N N N -19.262 -13.350 4.414  6.675  -1.108 -0.609 H162 YLH 42 
YLH H161 H7  H 0 0 N N N N N N -18.510 -11.733 4.631  6.186  -0.415 -2.173 H161 YLH 43 
YLH H181 H8  H 0 0 N N N N N N -21.287 -9.733  4.670  8.908  0.473  -0.607 H181 YLH 44 
YLH H183 H9  H 0 0 N N N N N N -19.813 -9.368  3.710  8.418  1.166  -2.172 H183 YLH 45 
YLH H182 H10 H 0 0 N N N N N N -21.417 -9.426  2.905  8.846  2.239  -0.818 H182 YLH 46 
YLH H211 H11 H 0 0 N N N N N N -21.272 -13.916 5.920  3.902  0.297  -2.557 H211 YLH 47 
YLH H221 H12 H 0 0 N N N N N N -22.207 -13.812 8.166  1.535  0.014  -1.954 H221 YLH 48 
YLH H241 H13 H 0 0 N N N N N N -21.242 -14.624 10.164 0.567  -2.907 -1.911 H241 YLH 49 
YLH H251 H14 H 0 0 N N N N N N -21.934 -15.890 12.157 -1.419 -4.158 -2.589 H251 YLH 50 
YLH H261 H15 H 0 0 N N N N N N -22.844 -14.769 14.173 -3.545 -3.867 -1.388 H261 YLH 51 
YLH H281 H16 H 0 0 N N N N N N -25.297 -14.177 14.905 -4.139 0.495  1.701  H281 YLH 52 
YLH H1   H17 H 0 1 N N N N N N -25.488 -13.054 16.294 -5.760 -0.219 1.970  H1   YLH 53 
YLH H2   H18 H 0 1 N N N N N N -26.824 -13.637 13.999 -6.690 1.371  0.583  H2   YLH 54 
YLH H301 H19 H 0 0 N N N N N N -28.668 -14.101 14.425 -4.729 2.798  1.352  H301 YLH 55 
YLH H302 H20 H 0 0 N N N N N N -27.907 -14.403 16.024 -3.845 2.262  -0.097 H302 YLH 56 
YLH H312 H21 H 0 0 N N N N N N -28.718 -12.301 16.885 -5.639 3.189  -1.536 H312 YLH 57 
YLH H311 H22 H 0 0 N N N N N N -29.279 -11.789 15.258 -6.524 3.725  -0.087 H311 YLH 58 
YLH H322 H23 H 0 0 N N N N N N -30.866 -13.734 15.183 -4.607 5.162  0.552  H322 YLH 59 
YLH H321 H24 H 0 0 N N N N N N -30.293 -14.271 16.799 -3.722 4.626  -0.897 H321 YLH 60 
YLH H051 H25 H 0 0 N N N N N N -22.997 -10.109 12.437 -2.118 -0.487 2.011  H051 YLH 61 
YLH H332 H26 H 0 0 N N N N N N -32.264 -12.945 16.940 -6.327 6.004  -0.944 H332 YLH 62 
YLH H331 H27 H 0 0 N N N N N N -31.016 -12.177 17.660 -4.859 6.713  -1.270 H331 YLH 63 
YLH H4   H29 H 0 1 N N N N N N -22.888 -7.506  10.123 0.167  1.814  3.809  H4   YLH 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YLH O20 S17  DOUB N N 1  
YLH S17 O19  DOUB N N 2  
YLH S17 C18  SING N N 3  
YLH S17 C16  SING N N 4  
YLH C16 C15  SING N N 5  
YLH C15 C21  DOUB Y N 6  
YLH C15 C13  SING Y N 7  
YLH F14 C13  SING N N 8  
YLH C21 C22  SING Y N 9  
YLH C13 C12  DOUB Y N 10 
YLH C22 C11  DOUB Y N 11 
YLH C12 C11  SING Y N 12 
YLH C11 C10  SING N N 13 
YLH O08 C07  DOUB N N 14 
YLH C07 C06  SING N N 15 
YLH C07 O09  SING N N 16 
YLH C10 C06  DOUB Y N 17 
YLH C10 C23  SING Y N 18 
YLH C06 N05  SING Y N 19 
YLH C23 C24  DOUB Y N 20 
YLH C23 C04  SING Y N 21 
YLH C24 C25  SING Y N 22 
YLH N05 C04  SING Y N 23 
YLH C04 C03  DOUB Y N 24 
YLH C25 C26  DOUB Y N 25 
YLH O36 C35  DOUB N N 26 
YLH C03 C26  SING Y N 27 
YLH C03 C02  SING N N 28 
YLH C35 O34  SING N N 29 
YLH C35 N27  SING N N 30 
YLH O34 C29  SING N N 31 
YLH C02 N27  SING N N 32 
YLH C02 C01  SING N N 33 
YLH N27 C28  SING N N 34 
YLH C29 C28  SING N N 35 
YLH C29 C30  SING N N 36 
YLH C30 C31  SING N N 37 
YLH C31 C32  SING N N 38 
YLH C32 N33  SING N N 39 
YLH C01 H012 SING N N 40 
YLH C01 H011 SING N N 41 
YLH C01 H013 SING N N 42 
YLH C02 H021 SING N N 43 
YLH C12 H121 SING N N 44 
YLH C16 H162 SING N N 45 
YLH C16 H161 SING N N 46 
YLH C18 H181 SING N N 47 
YLH C18 H183 SING N N 48 
YLH C18 H182 SING N N 49 
YLH C21 H211 SING N N 50 
YLH C22 H221 SING N N 51 
YLH C24 H241 SING N N 52 
YLH C25 H251 SING N N 53 
YLH C26 H261 SING N N 54 
YLH C28 H281 SING N N 55 
YLH C28 H1   SING N N 56 
YLH C29 H2   SING N N 57 
YLH C30 H301 SING N N 58 
YLH C30 H302 SING N N 59 
YLH C31 H312 SING N N 60 
YLH C31 H311 SING N N 61 
YLH C32 H322 SING N N 62 
YLH C32 H321 SING N N 63 
YLH N05 H051 SING N N 64 
YLH N33 H332 SING N N 65 
YLH N33 H331 SING N N 66 
YLH O09 H4   SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YLH InChI            InChI                1.06  "InChI=1S/C25H28FN3O6S/c1-14(29-12-17(5-4-10-27)35-25(29)32)18-6-3-7-19-21(23(24(30)31)28-22(18)19)15-8-9-16(20(26)11-15)13-36(2,33)34/h3,6-9,11,14,17,28H,4-5,10,12-13,27H2,1-2H3,(H,30,31)/t14-,17?/m0/s1" 
YLH InChIKey         InChI                1.06  QAHBWVAOQZLFQE-MBIQTGHCSA-N                                                                                                                                                                                  
YLH SMILES_CANONICAL CACTVS               3.385 "C[C@H](N1C[C@@H](CCCN)OC1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4"                                                                                                                             
YLH SMILES           CACTVS               3.385 "C[CH](N1C[CH](CCCN)OC1=O)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4"                                                                                                                                
YLH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CCCN"                                                                                                                                   
YLH SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CCCN"                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           YLH 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[5-(3-azanylpropyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YLH "Create component" 2023-06-20 PDBE 
YLH "Initial release"  2024-07-10 RCSB 
# 
