data_YCH
# 
_chem_comp.id                                    YCH 
_chem_comp.name                                  "[(4~{S})-2-oxidanyl-1,3,2-dioxaborolan-4-yl]methanol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C3 H7 B O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        117.896 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YCH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PCQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YCH C1  C1 C 0 1 N N S N N N 1.277  5.223 -19.548 -0.728 0.373  -0.373 C1  YCH 1  
YCH O1  O1 O 0 1 N N N N N N 0.128  3.540 -20.638 1.471  1.096  -0.187 O1  YCH 2  
YCH C2  C2 C 0 1 N N N N N N 2.612  6.053 -19.848 -2.035 0.247  0.413  C2  YCH 3  
YCH O2  O2 O 0 1 N N N N N N 1.729  1.986 -19.803 2.580  -1.145 0.210  O2  YCH 4  
YCH O3  O3 O 0 1 N N N N N N 3.445  6.026 -18.721 -2.811 -0.827 -0.121 O3  YCH 5  
YCH C   C3 C 0 1 N N N N N N 0.625  4.850 -20.776 0.140  1.531  0.179  C   YCH 6  
YCH O   O4 O 0 1 N N N N N N 1.576  4.088 -18.832 0.106  -0.784 -0.164 O   YCH 7  
YCH B   B1 B 0 1 N N N N N N 0.878  2.981 -19.434 1.448  -0.324 -0.034 B   YCH 8  
YCH H11 H1 H 0 1 N N N N N N 0.610  5.876 -18.966 -0.931 0.515  -1.435 H11 YCH 9  
YCH H22 H2 H 0 1 N N N N N N 3.138  5.604 -20.703 -1.810 0.047  1.461  H22 YCH 10 
YCH H23 H3 H 0 1 N N N N N N 2.350  7.095 -20.085 -2.598 1.177  0.333  H23 YCH 11 
YCH H21 H4 H 0 1 N N N N N N 1.672  1.852 -20.742 3.414  -0.658 0.269  H21 YCH 12 
YCH H31 H5 H 0 1 N N N N N N 4.237  6.519 -18.900 -3.655 -0.964 0.330  H31 YCH 13 
YCH HC3 H6 H 0 1 N N N N N N 1.347  4.888 -21.605 -0.111 2.474  -0.307 HC3 YCH 14 
YCH HC2 H7 H 0 1 N N N N N N -0.205 5.542 -20.980 0.040  1.612  1.262  HC2 YCH 15 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YCH C  O1  SING N N 1  
YCH C  C1  SING N N 2  
YCH O1 B   SING N N 3  
YCH C2 C1  SING N N 4  
YCH C2 O3  SING N N 5  
YCH O2 B   SING N N 6  
YCH C1 O   SING N N 7  
YCH B  O   SING N N 8  
YCH C1 H11 SING N N 9  
YCH C2 H22 SING N N 10 
YCH C2 H23 SING N N 11 
YCH O2 H21 SING N N 12 
YCH O3 H31 SING N N 13 
YCH C  HC3 SING N N 14 
YCH C  HC2 SING N N 15 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YCH InChI            InChI                1.06  "InChI=1S/C3H7BO4/c5-1-3-2-7-4(6)8-3/h3,5-6H,1-2H2/t3-/m0/s1" 
YCH InChIKey         InChI                1.06  HXGHIZVNPXUHFK-VKHMYHEASA-N                                   
YCH SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1COB(O)O1"                                            
YCH SMILES           CACTVS               3.385 "OC[CH]1COB(O)O1"                                             
YCH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B1(OC[C@@H](O1)CO)O"                                         
YCH SMILES           "OpenEye OEToolkits" 2.0.7 "B1(OCC(O1)CO)O"                                              
# 
_pdbx_chem_comp_identifier.comp_id           YCH 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(4~{S})-2-oxidanyl-1,3,2-dioxaborolan-4-yl]methanol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YCH "Create component" 2023-06-13 PDBE 
YCH "Initial release"  2024-01-17 RCSB 
YCH "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YCH 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
