data_X8H
# 
_chem_comp.id                                    X8H 
_chem_comp.name                                  "(1R,3S,4Z)-3-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-4-iminocyclopentane-1-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H19 N2 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-06 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        358.284 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X8H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EZ1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X8H C01 C1  C 0 1 Y N N N N N 25.628 0.360  -19.295 -0.497 -3.612 0.140  C01 X8H 1  
X8H C03 C2  C 0 1 Y N N N N N 25.864 2.230  -17.981 -2.161 -2.032 0.343  C03 X8H 2  
X8H C04 C3  C 0 1 Y N N N N N 25.967 1.455  -16.838 -1.357 -1.051 -0.206 C04 X8H 3  
X8H C05 C4  C 0 1 Y N N N N N 25.900 0.050  -16.895 -0.067 -1.374 -0.596 C05 X8H 4  
X8H C06 C5  C 0 1 Y N N N N N 25.752 -0.489 -18.195 0.370  -2.683 -0.419 C06 X8H 5  
X8H C07 C6  C 0 1 N N N N N N 25.426 -0.226 -20.731 -0.036 -5.032 0.344  C07 X8H 6  
X8H C09 C7  C 0 1 N N N N N N 26.113 -0.855 -15.685 0.841  -0.332 -1.198 C09 X8H 7  
X8H C10 C8  C 0 1 N N S N N N 25.261 -2.094 -15.259 1.631  0.360  -0.086 C10 X8H 8  
X8H C11 C9  C 0 1 N N N N N N 24.724 -2.193 -13.927 2.587  -0.626 0.562  C11 X8H 9  
X8H C12 C10 C 0 1 N N N N N N 23.753 -3.275 -13.794 3.832  0.194  0.885  C12 X8H 10 
X8H C13 C11 C 0 1 N N R N N N 23.244 -3.559 -15.214 3.956  1.133  -0.341 C13 X8H 11 
X8H C14 C12 C 0 1 N N N N N N 24.043 -2.568 -16.192 2.492  1.491  -0.678 C14 X8H 12 
X8H C16 C13 C 0 1 N N N N N N 26.159 2.241  -15.492 -1.877 0.353  -0.378 C16 X8H 13 
X8H C22 C14 C 0 1 N N N N N N 22.991 -5.016 -15.752 4.738  2.371  0.016  C22 X8H 14 
X8H N02 N1  N 0 1 Y N N N N N 25.678 1.677  -19.178 -1.717 -3.264 0.498  N02 X8H 15 
X8H N15 N2  N 0 1 N N N N N N 25.470 -1.924 -12.888 2.391  -1.869 0.789  N15 X8H 16 
X8H O08 O1  O 0 1 N N N N N N 25.711 -1.868 -18.385 1.627  -3.046 -0.786 O08 X8H 17 
X8H O17 O2  O 0 1 N N N N N N 27.573 2.104  -15.202 -3.222 0.424  0.097  O17 X8H 18 
X8H O19 O3  O 0 1 N N N N N N 27.299 1.350  -12.790 -3.427 2.867  1.048  O19 X8H 19 
X8H O20 O4  O 0 1 N N N N N N 29.627 2.241  -13.509 -4.124 2.313  -1.313 O20 X8H 20 
X8H O21 O5  O 0 1 N N N N N N 27.463 3.643  -13.103 -5.594 1.463  0.554  O21 X8H 21 
X8H O23 O6  O 0 1 N N N N N N 22.360 -5.833 -14.999 6.012  2.265  0.423  O23 X8H 22 
X8H O24 O7  O 0 1 N N N N N N 23.421 -5.347 -16.919 4.217  3.458  -0.063 O24 X8H 23 
X8H P18 P1  P 0 1 N N N N N N 28.010 2.355  -13.561 -4.093 1.778  0.066  P18 X8H 24 
X8H H1  H1  H 0 1 N N N N N N 25.936 3.305  -17.900 -3.167 -1.786 0.649  H1  X8H 25 
X8H H2  H2  H 0 1 N N N N N N 25.353 0.597  -21.457 -0.270 -5.621 -0.543 H2  X8H 26 
X8H H3  H3  H 0 1 N N N N N N 26.282 -0.868 -20.989 1.041  -5.044 0.514  H3  X8H 27 
X8H H4  H4  H 0 1 N N N N N N 24.501 -0.820 -20.757 -0.545 -5.458 1.208  H4  X8H 28 
X8H H5  H5  H 0 1 N N N N N N 27.135 -1.245 -15.803 1.533  -0.811 -1.892 H5  X8H 29 
X8H H6  H6  H 0 1 N Y N N N N 26.076 -0.178 -14.819 0.243  0.406  -1.733 H6  X8H 30 
X8H H7  H7  H 0 1 N N N N N N 25.972 -2.930 -15.334 0.947  0.763  0.661  H7  X8H 31 
X8H H8  H8  H 0 1 N N N N N N 22.921 -2.965 -13.144 3.689  0.770  1.799  H8  X8H 32 
X8H H9  H9  H 0 1 N N N N N N 24.233 -4.171 -13.373 4.707  -0.451 0.970  H9  X8H 33 
X8H H10 H10 H 0 1 N N N N N N 22.234 -3.124 -15.208 4.424  0.613  -1.177 H10 X8H 34 
X8H H11 H11 H 0 1 N N N N N N 23.417 -1.716 -16.497 2.356  1.540  -1.758 H11 X8H 35 
X8H H12 H12 H 0 1 N N N N N N 24.406 -3.095 -17.087 2.224  2.444  -0.221 H12 X8H 36 
X8H H13 H13 H 0 1 N N N N N N 25.886 3.299  -15.615 -1.253 1.043  0.190  H13 X8H 37 
X8H H14 H14 H 0 1 N N N N N N 25.551 1.797  -14.690 -1.850 0.623  -1.434 H14 X8H 38 
X8H H15 H15 H 0 1 N N N N N N 25.263 -2.522 -12.114 3.084  -2.400 1.214  H15 X8H 39 
X8H H16 H16 H 0 1 N N N N N N 25.808 -2.306 -17.548 1.694  -3.359 -1.699 H16 X8H 40 
X8H H17 H17 H 0 1 N N N N N N 27.925 0.772  -12.369 -3.373 2.583  1.971  H17 X8H 41 
X8H H18 H18 H 0 1 N N N N N N 28.175 4.216  -12.843 -6.176 2.235  0.561  H18 X8H 42 
X8H H19 H19 H 0 1 N N N N N N 22.278 -6.671 -15.439 6.473  3.087  0.641  H19 X8H 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X8H C07 C01 SING N N 1  
X8H C01 N02 DOUB Y N 2  
X8H C01 C06 SING Y N 3  
X8H N02 C03 SING Y N 4  
X8H O08 C06 SING N N 5  
X8H C06 C05 DOUB Y N 6  
X8H C03 C04 DOUB Y N 7  
X8H O24 C22 DOUB N N 8  
X8H C05 C04 SING Y N 9  
X8H C05 C09 SING N N 10 
X8H C04 C16 SING N N 11 
X8H C14 C10 SING N N 12 
X8H C14 C13 SING N N 13 
X8H C22 C13 SING N N 14 
X8H C22 O23 SING N N 15 
X8H C09 C10 SING N N 16 
X8H C16 O17 SING N N 17 
X8H C10 C11 SING N N 18 
X8H C13 C12 SING N N 19 
X8H O17 P18 SING N N 20 
X8H C11 C12 SING N N 21 
X8H C11 N15 DOUB N N 22 
X8H P18 O20 DOUB N N 23 
X8H P18 O21 SING N N 24 
X8H P18 O19 SING N N 25 
X8H C03 H1  SING N N 26 
X8H C07 H2  SING N N 27 
X8H C07 H3  SING N N 28 
X8H C07 H4  SING N N 29 
X8H C09 H5  SING N N 30 
X8H C09 H6  SING N N 31 
X8H C10 H7  SING N N 32 
X8H C12 H8  SING N N 33 
X8H C12 H9  SING N N 34 
X8H C13 H10 SING N N 35 
X8H C14 H11 SING N N 36 
X8H C14 H12 SING N N 37 
X8H C16 H13 SING N N 38 
X8H C16 H14 SING N N 39 
X8H N15 H15 SING N N 40 
X8H O08 H16 SING N N 41 
X8H O19 H17 SING N N 42 
X8H O21 H18 SING N N 43 
X8H O23 H19 SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X8H SMILES           ACDLabs              12.01 "Oc1c(CC2CC(CC2=N)C(=O)O)c(cnc1C)COP(=O)(O)O"                                                                                                                    
X8H InChI            InChI                1.06  "InChI=1S/C14H19N2O7P/c1-7-13(17)11(10(5-16-7)6-23-24(20,21)22)3-8-2-9(14(18)19)4-12(8)15/h5,8-9,15,17H,2-4,6H2,1H3,(H,18,19)(H2,20,21,22)/b15-12-/t8-,9+/m0/s1" 
X8H InChIKey         InChI                1.06  CTOWFYUCLIAQOJ-XPIHRMQRSA-N                                                                                                                                      
X8H SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(C[C@@H]2C[C@H](CC2=N)C(O)=O)c1O"                                                                                                         
X8H SMILES           CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(C[CH]2C[CH](CC2=N)C(O)=O)c1O"                                                                                                            
X8H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C[C@@H]2C[C@H](CC2=N)C(=O)O)O"                                                                                                         
X8H SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CC2CC(CC2=N)C(=O)O)O"                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X8H "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,3S,4Z)-3-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-4-iminocyclopentane-1-carboxylic acid"         
X8H "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},4~{S})-3-azanylidene-4-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methyl]cyclopentane-1-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X8H "Create component" 2022-11-06 RCSB 
X8H "Initial release"  2023-02-22 RCSB 
X8H "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            X8H 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C09 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
