data_X4H
# 
_chem_comp.id                                    X4H 
_chem_comp.name                                  Narazaciclib 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H27 N7 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "8-cyclopentyl-2-[4-(4-methylpiperazin-1-yl)anilino]-7-oxo-7,8-dihydropyrido[2,3-d]pyrimidine-6-carbonitrile" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-20 
_chem_comp.pdbx_modified_date                    2024-10-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        429.517 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X4H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UOF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X4H N1  N1  N 0 1 N N N N N N -43.578 -23.382 -5.094 -8.327  0.572  0.517  N1  X4H 1  
X4H N3  N2  N 0 1 N N N N N N -35.660 -21.043 -5.419 -0.353  -1.433 -0.007 N3  X4H 2  
X4H C4  C1  C 0 1 N N N N N N -41.231 -24.223 -4.339 -6.587  -1.137 0.296  C4  X4H 3  
X4H C5  C2  C 0 1 N N N N N N -42.591 -24.471 -5.057 -8.067  -0.808 0.082  C5  X4H 4  
X4H C6  C3  C 0 1 Y N N N N N -39.618 -22.359 -4.565 -4.403  -0.498 -0.346 C6  X4H 5  
X4H C7  C4  C 0 1 Y N N N N N -38.786 -23.110 -5.396 -4.004  -1.595 0.406  C7  X4H 6  
X4H C8  C5  C 0 1 Y N N N N N -37.493 -22.724 -5.703 -2.663  -1.905 0.518  C8  X4H 7  
X4H C10 C6  C 0 1 Y N N N N N -37.790 -20.796 -4.346 -2.112  -0.025 -0.878 C10 X4H 8  
X4H C13 C7  C 0 1 Y N N N N N -32.330 -21.408 -6.456 1.031   1.839  0.064  C13 X4H 9  
X4H C15 C8  C 0 1 N N N N N N -31.226 -23.342 -7.592 3.371   2.574  0.091  C15 X4H 10 
X4H C17 C9  C 0 1 N N N N N N -32.662 -25.285 -8.048 5.089   0.814  0.071  C17 X4H 11 
X4H C20 C10 C 0 1 N N N N N N -35.719 -25.684 -8.721 5.384   -1.863 -1.229 C20 X4H 12 
X4H C21 C11 C 0 1 N N N N N N -35.931 -27.206 -8.545 6.200   -3.111 -0.831 C21 X4H 13 
X4H C22 C12 C 0 1 N N N N N N -36.174 -27.372 -7.024 6.276   -3.114 0.705  C22 X4H 14 
X4H C24 C13 C 0 1 N N N N N N -30.352 -25.337 -8.696 5.721   3.248  0.118  C24 X4H 15 
X4H C1  C14 C 0 1 N N N N N N -44.552 -23.431 -6.193 -9.753  0.901  0.398  C1  X4H 16 
X4H C11 C15 C 0 1 Y N N N N N -39.080 -21.177 -4.040 -3.453  0.285  -0.990 C11 X4H 17 
X4H C12 C16 C 0 1 Y N N N N N -34.534 -21.552 -5.932 0.588   -0.424 0.016  C12 X4H 18 
X4H C14 C17 C 0 1 Y N N N N N -32.337 -22.682 -7.005 2.405   1.546  0.067  C14 X4H 19 
X4H C16 C18 C 0 1 N N N N N N -31.384 -24.580 -8.088 4.713   2.231  0.094  C16 X4H 20 
X4H C18 C19 C 0 1 Y N N N N N -33.574 -23.345 -6.957 2.808   0.192  0.046  C18 X4H 21 
X4H C19 C20 C 0 1 N N N N N N -35.080 -25.220 -7.368 4.531   -1.551 0.026  C19 X4H 22 
X4H C2  C21 C 0 1 N N N N N N -43.206 -22.039 -4.580 -7.502  1.524  -0.238 C2  X4H 23 
X4H C23 C22 C 0 1 N N N N N N -35.120 -26.436 -6.396 5.504   -1.869 1.188  C23 X4H 24 
X4H C3  C23 C 0 1 N N N N N N -41.956 -21.998 -3.665 -6.022  1.195  -0.024 C3  X4H 25 
X4H C9  C24 C 0 1 Y N N N N N -36.966 -21.554 -5.183 -1.713  -1.119 -0.121 C9  X4H 26 
X4H N2  N3  N 0 1 N N N N N N -40.911 -22.799 -4.286 -5.762  -0.184 -0.460 N2  X4H 27 
X4H N4  N4  N 0 1 Y N N N N N -33.390 -20.843 -5.926 0.173   0.839  0.041  N4  X4H 28 
X4H N5  N5  N 0 1 N N N N N N -33.721 -24.596 -7.467 4.139   -0.140 0.049  N5  X4H 29 
X4H N6  N6  N 0 1 Y N N N N N -34.632 -22.780 -6.427 1.872   -0.750 0.023  N6  X4H 30 
X4H N7  N7  N 0 1 N N N N N N -29.545 -25.972 -9.190 6.521   4.055  0.137  N7  X4H 31 
X4H O1  O1  O 0 1 N N N N N N -32.768 -26.406 -8.513 6.265   0.498  0.073  O1  X4H 32 
X4H H2  H2  H 0 1 N N N N N N -35.561 -20.088 -5.138 -0.073  -2.359 0.055  H2  X4H 33 
X4H H3  H3  H 0 1 N N N N N N -41.291 -24.615 -3.313 -6.348  -1.063 1.357  H3  X4H 34 
X4H H4  H4  H 0 1 N N N N N N -40.435 -24.749 -4.887 -6.385  -2.149 -0.053 H4  X4H 35 
X4H H5  H5  H 0 1 N N N N N N -43.070 -25.326 -4.557 -8.680  -1.495 0.665  H5  X4H 36 
X4H H6  H6  H 0 1 N N N N N N -42.363 -24.737 -6.100 -8.312  -0.908 -0.975 H6  X4H 37 
X4H H7  H7  H 0 1 N N N N N N -39.166 -24.029 -5.816 -4.743  -2.207 0.903  H7  X4H 38 
X4H H8  H8  H 0 1 N N N N N N -36.890 -23.340 -6.353 -2.353  -2.758 1.103  H8  X4H 39 
X4H H9  H9  H 0 1 N N N N N N -37.403 -19.880 -3.924 -1.374  0.584  -1.378 H9  X4H 40 
X4H H10 H10 H 0 1 N N N N N N -31.404 -20.852 -6.465 0.686   2.862  0.084  H10 X4H 41 
X4H H11 H11 H 0 1 N N N N N N -30.264 -22.854 -7.639 3.069   3.611  0.107  H11 X4H 42 
X4H H12 H12 H 0 1 N N N N N N -35.040 -25.480 -9.562 6.048   -1.030 -1.456 H12 X4H 43 
X4H H13 H13 H 0 1 N N N N N N -36.679 -25.175 -8.893 4.741   -2.083 -2.082 H13 X4H 44 
X4H H14 H14 H 0 1 N N N N N N -36.803 -27.549 -9.121 5.698   -4.013 -1.182 H14 X4H 45 
X4H H15 H15 H 0 1 N N N N N N -35.039 -27.765 -8.863 7.202   -3.052 -1.255 H15 X4H 46 
X4H H16 H16 H 0 1 N N N N N N -37.193 -27.059 -6.751 5.812   -4.018 1.100  H16 X4H 47 
X4H H17 H17 H 0 1 N N N N N N -36.014 -28.414 -6.710 7.316   -3.057 1.028  H17 X4H 48 
X4H H18 H18 H 0 1 N N N N N N -45.234 -22.571 -6.118 -10.336 0.222  1.020  H18 X4H 49 
X4H H19 H19 H 0 1 N N N N N N -44.021 -23.394 -7.156 -9.918  1.927  0.727  H19 X4H 50 
X4H H20 H20 H 0 1 N N N N N N -45.130 -24.365 -6.129 -10.064 0.798  -0.642 H20 X4H 51 
X4H H21 H21 H 0 1 N N N N N N -39.681 -20.558 -3.390 -3.764  1.135  -1.578 H21 X4H 52 
X4H H22 H22 H 0 1 N N N N N N -35.757 -24.461 -6.948 3.655   -2.198 0.068  H22 X4H 53 
X4H H23 H23 H 0 1 N N N N N N -43.015 -21.386 -5.444 -7.741  1.451  -1.299 H23 X4H 54 
X4H H24 H24 H 0 1 N N N N N N -44.059 -21.647 -4.006 -7.703  2.537  0.111  H24 X4H 55 
X4H H25 H25 H 0 1 N N N N N N -34.138 -26.929 -6.345 4.950   -2.093 2.099  H25 X4H 56 
X4H H26 H26 H 0 1 N N N N N N -35.426 -26.122 -5.387 6.188   -1.036 1.351  H26 X4H 57 
X4H H27 H27 H 0 1 N N N N N N -41.611 -20.960 -3.552 -5.409  1.882  -0.607 H27 X4H 58 
X4H H28 H28 H 0 1 N N N N N N -42.204 -22.412 -2.677 -5.777  1.295  1.033  H28 X4H 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X4H N7  C24 TRIP N N 1  
X4H C20 C21 SING N N 2  
X4H C20 C19 SING N N 3  
X4H C24 C16 SING N N 4  
X4H C21 C22 SING N N 5  
X4H O1  C17 DOUB N N 6  
X4H C16 C17 SING N N 7  
X4H C16 C15 DOUB N N 8  
X4H C17 N5  SING N N 9  
X4H C15 C14 SING N N 10 
X4H N5  C19 SING N N 11 
X4H N5  C18 SING N N 12 
X4H C19 C23 SING N N 13 
X4H C22 C23 SING N N 14 
X4H C14 C18 DOUB Y N 15 
X4H C14 C13 SING Y N 16 
X4H C18 N6  SING Y N 17 
X4H C13 N4  DOUB Y N 18 
X4H N6  C12 DOUB Y N 19 
X4H C1  N1  SING N N 20 
X4H C12 N4  SING Y N 21 
X4H C12 N3  SING N N 22 
X4H C8  C7  DOUB Y N 23 
X4H C8  C9  SING Y N 24 
X4H N3  C9  SING N N 25 
X4H C7  C6  SING Y N 26 
X4H C9  C10 DOUB Y N 27 
X4H N1  C5  SING N N 28 
X4H N1  C2  SING N N 29 
X4H C5  C4  SING N N 30 
X4H C2  C3  SING N N 31 
X4H C6  N2  SING N N 32 
X4H C6  C11 DOUB Y N 33 
X4H C10 C11 SING Y N 34 
X4H C4  N2  SING N N 35 
X4H N2  C3  SING N N 36 
X4H N3  H2  SING N N 37 
X4H C4  H3  SING N N 38 
X4H C4  H4  SING N N 39 
X4H C5  H5  SING N N 40 
X4H C5  H6  SING N N 41 
X4H C7  H7  SING N N 42 
X4H C8  H8  SING N N 43 
X4H C10 H9  SING N N 44 
X4H C13 H10 SING N N 45 
X4H C15 H11 SING N N 46 
X4H C20 H12 SING N N 47 
X4H C20 H13 SING N N 48 
X4H C21 H14 SING N N 49 
X4H C21 H15 SING N N 50 
X4H C22 H16 SING N N 51 
X4H C22 H17 SING N N 52 
X4H C1  H18 SING N N 53 
X4H C1  H19 SING N N 54 
X4H C1  H20 SING N N 55 
X4H C11 H21 SING N N 56 
X4H C19 H22 SING N N 57 
X4H C2  H23 SING N N 58 
X4H C2  H24 SING N N 59 
X4H C23 H25 SING N N 60 
X4H C23 H26 SING N N 61 
X4H C3  H27 SING N N 62 
X4H C3  H28 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X4H SMILES           ACDLabs              12.01 "CN1CCN(CC1)c1ccc(Nc2nc3N(C4CCCC4)C(=O)C(C#N)=Cc3cn2)cc1"                                                                                                               
X4H InChI            InChI                1.06  "InChI=1S/C24H27N7O/c1-29-10-12-30(13-11-29)20-8-6-19(7-9-20)27-24-26-16-18-14-17(15-25)23(32)31(22(18)28-24)21-4-2-3-5-21/h6-9,14,16,21H,2-5,10-13H2,1H3,(H,26,27,28)" 
X4H InChIKey         InChI                1.06  VADOZMZXXRBXNY-UHFFFAOYSA-N                                                                                                                                             
X4H SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)c2ccc(Nc3ncc4C=C(C#N)C(=O)N(C5CCCC5)c4n3)cc2"                                                                                                               
X4H SMILES           CACTVS               3.385 "CN1CCN(CC1)c2ccc(Nc3ncc4C=C(C#N)C(=O)N(C5CCCC5)c4n3)cc2"                                                                                                               
X4H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc(cc2)Nc3ncc4c(n3)N(C(=O)C(=C4)C#N)C5CCCC5"                                                                                                             
X4H SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc(cc2)Nc3ncc4c(n3)N(C(=O)C(=C4)C#N)C5CCCC5"                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X4H "SYSTEMATIC NAME" ACDLabs              12.01 "8-cyclopentyl-2-[4-(4-methylpiperazin-1-yl)anilino]-7-oxo-7,8-dihydropyrido[2,3-d]pyrimidine-6-carbonitrile"      
X4H "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "8-cyclopentyl-2-[[4-(4-methylpiperazin-1-yl)phenyl]amino]-7-oxidanylidene-pyrido[2,3-d]pyrimidine-6-carbonitrile" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      X4H 
_pdbx_chem_comp_synonyms.name         "8-cyclopentyl-2-[4-(4-methylpiperazin-1-yl)anilino]-7-oxo-7,8-dihydropyrido[2,3-d]pyrimidine-6-carbonitrile" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X4H "Create component" 2023-10-20 RCSB 
X4H "Initial release"  2024-10-23 RCSB 
# 
