data_X3H
# 
_chem_comp.id                                    X3H 
_chem_comp.name                                  PIRONETIN 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H34 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-11-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        326.471 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X3H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5FNV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X3H C14  C14  C 0 1 N N N N N N 125.976 38.256 -0.464 8.104  0.713  0.749  C14  X3H 1  
X3H C16  C16  C 0 1 N N N N N N 113.624 35.287 4.664  -5.152 2.810  0.907  C16  X3H 2  
X3H C19  C19  C 0 1 N N N N N N 120.352 40.670 3.703  2.388  -2.625 -0.112 C19  X3H 3  
X3H C18  C18  C 0 1 N N N N N N 121.116 37.716 0.648  3.444  0.871  1.381  C18  X3H 4  
X3H C17  C17  C 0 1 N N N N N N 120.448 36.156 3.733  1.067  1.872  -1.168 C17  X3H 5  
X3H O01  O01  O 0 1 N N N N N N 114.304 40.006 5.122  -4.181 -2.796 0.592  O01  X3H 6  
X3H O07  O07  O 0 1 N N N N N N 119.407 38.065 5.472  -0.331 -0.539 -1.888 O07  X3H 7  
X3H C13  C13  C 0 1 N N N N N N 124.693 38.897 0.024  6.830  -0.071 0.566  C13  X3H 8  
X3H C12  C12  C 0 1 N N N N N N 124.136 38.477 1.181  5.894  0.379  -0.233 C12  X3H 9  
X3H C15  C15  C 0 1 N N N N N N 114.734 36.276 4.376  -4.036 1.763  0.882  C15  X3H 10 
X3H C11  C11  C 0 1 N N N N N N 122.857 39.105 1.689  4.620  -0.405 -0.417 C11  X3H 11 
X3H C02  C02  C 0 1 N N N N N N 114.811 38.657 7.004  -5.433 -0.782 0.538  C02  X3H 12 
X3H C06  C06  C 0 1 N N N N N N 117.642 36.920 4.383  -1.557 0.861  -0.346 C06  X3H 13 
X3H O09  O09  O 0 1 N N N N N N 120.295 39.705 2.668  1.999  -1.379 0.468  O09  X3H 14 
X3H O06  O06  O 0 1 N N N N N N 116.096 38.684 4.784  -2.982 -0.922 0.514  O06  X3H 15 
X3H C01  C01  C 0 1 N N N N N N 115.032 39.150 5.581  -4.154 -1.589 0.550  C01  X3H 16 
X3H C10  C10  C 0 1 N N S N N N 121.840 38.015 1.943  3.420  0.491  -0.101 C10  X3H 17 
X3H C08  C08  C 0 1 N N S N N N 119.795 37.419 3.213  0.931  0.676  -0.224 C08  X3H 18 
X3H C07  C07  C 0 1 N N R N N N 118.778 37.907 4.223  -0.363 -0.077 -0.536 C07  X3H 19 
X3H C03  C03  C 0 1 N N N N N N 114.594 37.194 6.671  -5.350 0.240  -0.602 C03  X3H 20 
X3H C05  C05  C 0 1 N N R N N N 116.646 37.522 5.352  -2.857 0.077  -0.537 C05  X3H 21 
X3H C04  C04  C 0 1 N N R N N N 115.514 36.565 5.650  -4.049 1.036  -0.464 C04  X3H 22 
X3H C09  C09  C 0 1 N N R N N N 120.869 38.467 3.017  2.125  -0.262 -0.414 C09  X3H 23 
X3H H141 H141 H 0 0 N N N N N N 126.767 38.403 0.286  8.757  0.186  1.445  H141 X3H 24 
X3H H142 H142 H 0 0 N N N N N N 125.812 37.179 -0.618 8.606  0.820  -0.212 H142 X3H 25 
X3H H143 H143 H 0 0 N N N N N N 126.280 38.720 -1.414 7.869  1.700  1.148  H143 X3H 26 
X3H H161 H161 H 0 0 N N N N N N 114.057 34.350 5.044  -5.142 3.328  1.866  H161 X3H 27 
X3H H162 H162 H 0 0 N N N N N N 112.944 35.709 5.418  -4.992 3.529  0.103  H162 X3H 28 
X3H H163 H163 H 0 0 N N N N N N 113.065 35.083 3.739  -6.114 2.318  0.769  H163 X3H 29 
X3H H191 H191 H 0 0 N N N N N N 119.811 40.295 4.584  2.327  -3.412 0.640  H191 X3H 30 
X3H H192 H192 H 0 0 N N N N N N 119.887 41.606 3.359  1.723  -2.864 -0.942 H192 X3H 31 
X3H H193 H193 H 0 0 N N N N N N 121.402 40.859 3.970  3.413  -2.552 -0.477 H193 X3H 32 
X3H H181 H181 H 0 0 N N N N N N 120.609 38.625 0.293  3.393  -0.033 1.988  H181 X3H 33 
X3H H182 H182 H 0 0 N N N N N N 121.841 37.382 -0.109 4.366  1.407  1.604  H182 X3H 34 
X3H H183 H183 H 0 0 N N N N N N 120.372 36.924 0.818  2.589  1.509  1.606  H183 X3H 35 
X3H H171 H171 H 0 0 N N N N N N 120.946 36.368 4.691  1.989  2.408  -0.946 H171 X3H 36 
X3H H172 H172 H 0 0 N N N N N N 119.682 35.381 3.882  1.091  1.519  -2.200 H172 X3H 37 
X3H H173 H173 H 0 0 N N N N N N 121.191 35.801 3.004  0.216  2.540  -1.033 H173 X3H 38 
X3H H071 H071 H 0 0 N N N N N N 118.773 38.371 6.110  -0.246 0.167  -2.543 H071 X3H 39 
X3H H13  H13  H 0 1 N N N N N N 124.227 39.685 -0.549 6.688  -1.003 1.092  H13  X3H 40 
X3H H12  H12  H 0 1 N N N N N N 124.607 37.687 1.747  6.035  1.311  -0.760 H12  X3H 41 
X3H H151 H151 H 0 0 N N N N N N 115.413 35.853 3.621  -3.073 2.255  1.020  H151 X3H 42 
X3H H152 H152 H 0 0 N N N N N N 114.299 37.212 3.995  -4.195 1.044  1.686  H152 X3H 43 
X3H H111 H111 H 0 0 N N N N N N 123.059 39.647 2.625  4.552  -0.752 -1.448 H111 X3H 44 
X3H H112 H112 H 0 0 N N N N N N 122.466 39.806 0.937  4.620  -1.262 0.256  H112 X3H 45 
X3H H2   H2   H 0 1 N N N N N N 113.929 39.115 7.474  -6.284 -1.444 0.377  H2   X3H 46 
X3H H021 H021 H 0 0 N N N N N N 115.691 38.815 7.644  -5.548 -0.262 1.489  H021 X3H 47 
X3H H061 H061 H 0 0 N N N N N N 117.159 36.743 3.411  -1.532 1.283  0.658  H061 X3H 48 
X3H H062 H062 H 0 0 N N N N N N 118.025 35.969 4.781  -1.507 1.666  -1.080 H062 X3H 49 
X3H H10  H10  H 0 1 N N N N N N 122.360 37.108 2.285  3.471  1.394  -0.709 H10  X3H 50 
X3H H08  H08  H 0 1 N N N N N N 119.297 37.213 2.254  0.907  1.028  0.807  H08  X3H 51 
X3H H07  H07  H 0 1 N N N N N N 118.368 38.868 3.878  -0.460 -0.929 0.137  H07  X3H 52 
X3H H1   H1   H 0 1 N N N N N N 114.701 36.624 7.606  -5.361 -0.280 -1.560 H1   X3H 53 
X3H H031 H031 H 0 0 N N N N N N 113.565 37.091 6.295  -6.201 0.919  -0.546 H031 X3H 54 
X3H H05  H05  H 0 1 N N N N N N 117.165 37.763 6.291  -2.845 -0.417 -1.509 H05  X3H 55 
X3H H04  H04  H 0 1 N N N N N N 115.922 35.625 6.051  -3.980 1.764  -1.271 H04  X3H 56 
X3H H09  H09  H 0 1 N N N N N N 121.425 38.570 3.961  2.150  -0.615 -1.445 H09  X3H 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X3H C14 C13  SING N N 1  
X3H C13 C12  DOUB N E 2  
X3H C18 C10  SING N N 3  
X3H C12 C11  SING N N 4  
X3H C11 C10  SING N N 5  
X3H C10 C09  SING N N 6  
X3H O09 C09  SING N N 7  
X3H O09 C19  SING N N 8  
X3H C09 C08  SING N N 9  
X3H C08 C17  SING N N 10 
X3H C08 C07  SING N N 11 
X3H C07 C06  SING N N 12 
X3H C07 O07  SING N N 13 
X3H C06 C05  SING N N 14 
X3H C15 C16  SING N N 15 
X3H C15 C04  SING N N 16 
X3H O06 C05  SING N N 17 
X3H O06 C01  SING N N 18 
X3H O01 C01  DOUB N N 19 
X3H C05 C04  SING N N 20 
X3H C01 C02  SING N N 21 
X3H C04 C03  SING N N 22 
X3H C02 C03  SING N N 23 
X3H C16 H163 SING N N 24 
X3H C16 H161 SING N N 25 
X3H C16 H162 SING N N 26 
X3H C15 H151 SING N N 27 
X3H C15 H152 SING N N 28 
X3H C04 H04  SING N N 29 
X3H C03 H031 SING N N 30 
X3H C03 H1   SING N N 31 
X3H C02 H021 SING N N 32 
X3H C02 H2   SING N N 33 
X3H C05 H05  SING N N 34 
X3H C06 H061 SING N N 35 
X3H C06 H062 SING N N 36 
X3H C07 H07  SING N N 37 
X3H O07 H071 SING N N 38 
X3H C08 H08  SING N N 39 
X3H C17 H172 SING N N 40 
X3H C17 H173 SING N N 41 
X3H C17 H171 SING N N 42 
X3H C09 H09  SING N N 43 
X3H C19 H192 SING N N 44 
X3H C19 H191 SING N N 45 
X3H C19 H193 SING N N 46 
X3H C10 H10  SING N N 47 
X3H C18 H183 SING N N 48 
X3H C18 H181 SING N N 49 
X3H C18 H182 SING N N 50 
X3H C11 H111 SING N N 51 
X3H C11 H112 SING N N 52 
X3H C12 H12  SING N N 53 
X3H C13 H13  SING N N 54 
X3H C14 H143 SING N N 55 
X3H C14 H141 SING N N 56 
X3H C14 H142 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X3H InChI            InChI                1.03  "InChI=1S/C19H34O4/c1-6-8-9-13(3)19(22-5)14(4)16(20)12-17-15(7-2)10-11-18(21)23-17/h6,8,13-17,19-20H,7,9-12H2,1-5H3/b8-6+/t13-,14-,15+,16+,17+,19+/m0/s1" 
X3H InChIKey         InChI                1.03  UKUHYDSKNMYCAN-FSEPSNHWSA-N                                                                                                                               
X3H SMILES_CANONICAL CACTVS               3.385 "CC[C@@H]1CCC(=O)O[C@@H]1C[C@@H](O)[C@H](C)[C@H](OC)[C@@H](C)C/C=C/C"                                                                                     
X3H SMILES           CACTVS               3.385 "CC[CH]1CCC(=O)O[CH]1C[CH](O)[CH](C)[CH](OC)[CH](C)CC=CC"                                                                                                 
X3H SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC[C@@H]1CCC(=O)O[C@@H]1C[C@H]([C@H](C)[C@@H]([C@@H](C)C/C=C/C)OC)O"                                                                                     
X3H SMILES           "OpenEye OEToolkits" 1.7.6 "CCC1CCC(=O)OC1CC(C(C)C(C(C)CC=CC)OC)O"                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           X3H 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   1.7.6 
_pdbx_chem_comp_identifier.identifier        "(5R,6R)-5-ethyl-6-[(E,2R,3S,4R,5S)-4-methoxy-3,5-dimethyl-2-oxidanyl-non-7-enyl]oxan-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X3H "Create component"   2015-11-17 EBI  
X3H "Initial release"    2016-05-18 RCSB 
X3H "Other modification" 2016-07-05 EBI  
X3H "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            X3H 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C03 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
