data_V8H
#

_chem_comp.id                                   V8H
_chem_comp.name                                 "[[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-4~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H26 N2 O15 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-04-28
_chem_comp.pdbx_modified_date                   2022-04-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       548.330
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V8H
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       7OCQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V8H  O7N  O1   O  0  1  N  N  N  59.282  13.586  -16.175  ?  ?  ?  O7N  V8H   1  
V8H  C7N  C1   C  0  1  N  N  N  58.451  12.789  -16.577  ?  ?  ?  C7N  V8H   2  
V8H  N7N  N1   N  0  1  N  N  N  57.165  12.887  -16.239  ?  ?  ?  N7N  V8H   3  
V8H  C3N  C2   C  0  1  N  N  N  58.884  11.665  -17.470  ?  ?  ?  C3N  V8H   4  
V8H  C2N  C3   C  0  1  N  N  N  58.526  10.365  -17.138  ?  ?  ?  C2N  V8H   5  
V8H  C4N  C4   C  0  1  N  N  N  59.692  11.955  -18.716  ?  ?  ?  C4N  V8H   6  
V8H  C5N  C5   C  0  1  N  N  N  60.019  10.741  -19.455  ?  ?  ?  C5N  V8H   7  
V8H  C6N  C6   C  0  1  N  N  N  59.604   9.485  -19.022  ?  ?  ?  C6N  V8H   8  
V8H  N1N  N2   N  0  1  N  N  N  58.886   9.321  -17.899  ?  ?  ?  N1N  V8H   9  
V8H  C1D  C7   C  0  1  N  N  R  58.488   7.965  -17.498  ?  ?  ?  C1D  V8H  10  
V8H  O4D  O2   O  0  1  N  N  N  57.067   7.850  -17.401  ?  ?  ?  O4D  V8H  11  
V8H  C2D  C8   C  0  1  N  N  R  59.053   7.593  -16.129  ?  ?  ?  C2D  V8H  12  
V8H  O2D  O3   O  0  1  N  N  N  60.179   6.719  -16.260  ?  ?  ?  O2D  V8H  13  
V8H  C3D  C9   C  0  1  N  N  S  57.903   6.936  -15.384  ?  ?  ?  C3D  V8H  14  
V8H  O3D  O4   O  0  1  N  N  N  58.234   5.608  -14.968  ?  ?  ?  O3D  V8H  15  
V8H  C4D  C10  C  0  1  N  N  R  56.736   6.922  -16.364  ?  ?  ?  C4D  V8H  16  
V8H  C5D  C11  C  0  1  N  N  N  55.407   7.287  -15.710  ?  ?  ?  C5D  V8H  17  
V8H  O5D  O5   O  0  1  N  N  N  55.461   8.608  -15.176  ?  ?  ?  O5D  V8H  18  
V8H  PN   P1   P  0  1  N  N  N  54.284   9.158  -14.224  ?  ?  ?  PN   V8H  19  
V8H  O1N  O6   O  0  1  N  N  N  54.829  10.297  -13.395  ?  ?  ?  O1N  V8H  20  
V8H  O2N  O7   O  0  1  N  N  N  53.140   9.627  -15.090  ?  ?  ?  O2N  V8H  21  
V8H  O3   O8   O  0  1  N  N  N  53.766   7.984  -13.244  ?  ?  ?  O3   V8H  22  
V8H  PA   P2   P  0  1  N  N  N  52.662   8.241  -12.094  ?  ?  ?  PA   V8H  23  
V8H  O1A  O9   O  0  1  N  N  N  53.132   7.603  -10.810  ?  ?  ?  O1A  V8H  24  
V8H  O2A  O10  O  0  1  N  N  N  52.458   9.724  -11.884  ?  ?  ?  O2A  V8H  25  
V8H  O5B  O11  O  0  1  N  N  N  51.255   7.587  -12.528  ?  ?  ?  O5B  V8H  26  
V8H  C5B  C12  C  0  1  N  N  N  51.021   6.182  -12.450  ?  ?  ?  C5B  V8H  27  
V8H  C4B  C13  C  0  1  N  N  R  49.521   5.914  -12.515  ?  ?  ?  C4B  V8H  28  
V8H  C3B  C14  C  0  1  N  N  S  48.807   6.372  -11.251  ?  ?  ?  C3B  V8H  29  
V8H  O3B  O12  O  0  1  N  N  N  47.696   7.211  -11.586  ?  ?  ?  O3B  V8H  30  
V8H  C2B  C15  C  0  1  N  N  R  48.363   5.103  -10.542  ?  ?  ?  C2B  V8H  31  
V8H  O2B  O13  O  0  1  N  N  N  46.961   5.122  -10.251  ?  ?  ?  O2B  V8H  32  
V8H  C1B  C16  C  0  1  N  N  R  48.702   3.951  -11.479  ?  ?  ?  C1B  V8H  33  
V8H  O4B  O14  O  0  1  N  N  N  49.283   4.511  -12.660  ?  ?  ?  O4B  V8H  34  
V8H  O1   O15  O  0  1  N  N  N  49.629   3.055  -10.855  ?  ?  ?  O1   V8H  35  
V8H  H1   H1   H  0  1  N  N  N  56.860  13.628  -15.641  ?  ?  ?  H1   V8H  36  
V8H  H2   H2   H  0  1  N  N  N  56.505  12.219  -16.583  ?  ?  ?  H2   V8H  37  
V8H  H3   H3   H  0  1  N  N  N  57.944  10.190  -16.245  ?  ?  ?  H3   V8H  38  
V8H  H4   H4   H  0  1  N  N  N  60.627  12.455  -18.423  ?  ?  ?  H4   V8H  39  
V8H  H5   H5   H  0  1  N  N  N  60.599  10.819  -20.363  ?  ?  ?  H5   V8H  40  
V8H  H6   H6   H  0  1  N  N  N  59.867   8.616  -19.607  ?  ?  ?  H6   V8H  41  
V8H  H7   H7   H  0  1  N  N  N  58.868   7.245  -18.237  ?  ?  ?  H7   V8H  42  
V8H  H8   H8   H  0  1  N  N  N  59.344   8.513  -15.601  ?  ?  ?  H8   V8H  43  
V8H  H9   H9   H  0  1  N  N  N  60.513   6.501  -15.398  ?  ?  ?  H9   V8H  44  
V8H  H10  H10  H  0  1  N  N  N  57.636   7.555  -14.515  ?  ?  ?  H10  V8H  45  
V8H  H11  H11  H  0  1  N  N  N  58.962   5.639  -14.359  ?  ?  ?  H11  V8H  46  
V8H  H12  H12  H  0  1  N  N  N  56.649   5.910  -16.786  ?  ?  ?  H12  V8H  47  
V8H  H13  H13  H  0  1  N  N  N  54.606   7.233  -16.462  ?  ?  ?  H13  V8H  48  
V8H  H14  H14  H  0  1  N  N  N  55.196   6.576  -14.898  ?  ?  ?  H14  V8H  49  
V8H  H15  H15  H  0  1  N  N  N  54.340  11.089  -13.584  ?  ?  ?  H15  V8H  50  
V8H  H16  H16  H  0  1  N  N  N  53.203   8.266  -10.134  ?  ?  ?  H16  V8H  51  
V8H  H17  H17  H  0  1  N  N  N  51.520   5.679  -13.291  ?  ?  ?  H17  V8H  52  
V8H  H18  H18  H  0  1  N  N  N  51.422   5.795  -11.502  ?  ?  ?  H18  V8H  53  
V8H  H19  H19  H  0  1  N  N  N  49.102   6.458  -13.375  ?  ?  ?  H19  V8H  54  
V8H  H20  H20  H  0  1  N  N  N  49.518   6.914  -10.611  ?  ?  ?  H20  V8H  55  
V8H  H21  H21  H  0  1  N  N  N  47.258   7.491  -10.790  ?  ?  ?  H21  V8H  56  
V8H  H22  H22  H  0  1  N  N  N  48.942   4.990   -9.614  ?  ?  ?  H22  V8H  57  
V8H  H23  H23  H  0  1  N  N  N  46.768   5.846   -9.666  ?  ?  ?  H23  V8H  58  
V8H  H24  H24  H  0  1  N  N  N  47.775   3.416  -11.732  ?  ?  ?  H24  V8H  59  
V8H  H25  H25  H  0  1  N  N  N  49.236   2.687  -10.072  ?  ?  ?  H25  V8H  60  
V8H  H26  H26  H  0  1  N  N  N  59.109  12.621  -19.369  ?  ?  ?  H26  V8H  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V8H  C5N  C6N  DOUB  N  N   1  
V8H  C5N  C4N  SING  N  N   2  
V8H  C6N  N1N  SING  N  N   3  
V8H  C4N  C3N  SING  N  N   4  
V8H  N1N  C1D  SING  N  N   5  
V8H  N1N  C2N  SING  N  N   6  
V8H  C1D  O4D  SING  N  N   7  
V8H  C1D  C2D  SING  N  N   8  
V8H  C3N  C2N  DOUB  N  N   9  
V8H  C3N  C7N  SING  N  N  10  
V8H  O4D  C4D  SING  N  N  11  
V8H  C7N  N7N  SING  N  N  12  
V8H  C7N  O7N  DOUB  N  N  13  
V8H  C4D  C5D  SING  N  N  14  
V8H  C4D  C3D  SING  N  N  15  
V8H  O2D  C2D  SING  N  N  16  
V8H  C2D  C3D  SING  N  N  17  
V8H  C5D  O5D  SING  N  N  18  
V8H  C3D  O3D  SING  N  N  19  
V8H  O5D  PN   SING  N  N  20  
V8H  O2N  PN   DOUB  N  N  21  
V8H  PN   O1N  SING  N  N  22  
V8H  PN   O3   SING  N  N  23  
V8H  O3   PA   SING  N  N  24  
V8H  O4B  C4B  SING  N  N  25  
V8H  O4B  C1B  SING  N  N  26  
V8H  O5B  C5B  SING  N  N  27  
V8H  O5B  PA   SING  N  N  28  
V8H  C4B  C5B  SING  N  N  29  
V8H  C4B  C3B  SING  N  N  30  
V8H  PA   O2A  DOUB  N  N  31  
V8H  PA   O1A  SING  N  N  32  
V8H  O3B  C3B  SING  N  N  33  
V8H  C1B  O1   SING  N  N  34  
V8H  C1B  C2B  SING  N  N  35  
V8H  C3B  C2B  SING  N  N  36  
V8H  C2B  O2B  SING  N  N  37  
V8H  N7N  H1   SING  N  N  38  
V8H  N7N  H2   SING  N  N  39  
V8H  C2N  H3   SING  N  N  40  
V8H  C4N  H4   SING  N  N  41  
V8H  C5N  H5   SING  N  N  42  
V8H  C6N  H6   SING  N  N  43  
V8H  C1D  H7   SING  N  N  44  
V8H  C2D  H8   SING  N  N  45  
V8H  O2D  H9   SING  N  N  46  
V8H  C3D  H10  SING  N  N  47  
V8H  O3D  H11  SING  N  N  48  
V8H  C4D  H12  SING  N  N  49  
V8H  C5D  H13  SING  N  N  50  
V8H  C5D  H14  SING  N  N  51  
V8H  O1N  H15  SING  N  N  52  
V8H  O1A  H16  SING  N  N  53  
V8H  C5B  H17  SING  N  N  54  
V8H  C5B  H18  SING  N  N  55  
V8H  C4B  H19  SING  N  N  56  
V8H  C3B  H20  SING  N  N  57  
V8H  O3B  H21  SING  N  N  58  
V8H  C2B  H22  SING  N  N  59  
V8H  O2B  H23  SING  N  N  60  
V8H  C1B  H24  SING  N  N  61  
V8H  O1   H25  SING  N  N  62  
V8H  C4N  H26  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V8H  InChI             InChI                 1.03   "InChI=1S/C16H26N2O15P2/c17-14(23)7-2-1-3-18(4-7)15-12(21)10(19)8(31-15)5-29-34(25,26)33-35(27,28)30-6-9-11(20)13(22)16(24)32-9/h1,3-4,8-13,15-16,19-22,24H,2,5-6H2,(H2,17,23)(H,25,26)(H,27,28)/t8-,9-,10-,11-,12-,13-,15-,16-/m1/s1"  
V8H  InChIKey          InChI                 1.03   CORMEBAPIXUNEL-UDOSWUQBSA-N  
V8H  SMILES_CANONICAL  CACTVS                3.385  "NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@@H](O)[C@H](O)[C@@H]3O)[C@@H](O)[C@H]2O"  
V8H  SMILES            CACTVS                3.385  "NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH](O)[CH](O)[CH]3O)[CH](O)[CH]2O"  
V8H  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1C=CN(C=C1C(=O)N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)O)O)O)O)O"  
V8H  SMILES            "OpenEye OEToolkits"  2.0.7  "C1C=CN(C=C1C(=O)N)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)O)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          V8H
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-4~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V8H  "Create component"    2021-04-28  PDBE  
V8H  "Other modification"  2021-04-29  PDBE  
V8H  "Initial release"     2022-04-20  RCSB  
##
