data_V6H
#

_chem_comp.id                                   V6H
_chem_comp.name                                 "2-[[2,5-bis(fluoranyl)phenyl]methylamino]-4-(cyclopentylamino)-N-[3-(2-oxidanylidenepyrrolidin-1-yl)propyl]pyrimidine-5-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H30 F2 N6 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-04-19
_chem_comp.pdbx_modified_date                   2021-05-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       472.531
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V6H
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OAM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V6H  C1   C1   C  0  1  N  N  N   -6.431  21.212  12.478   4.289   0.697   0.146  C1   V6H   1  
V6H  C2   C2   C  0  1  N  N  N   -5.961  21.507  11.071   5.214  -0.499  -0.091  C2   V6H   2  
V6H  C3   C3   C  0  1  N  N  N   -5.176  20.381  10.415   6.671  -0.037  -0.031  C3   V6H   3  
V6H  C4   C4   C  0  1  N  N  N   -3.549  21.780   9.004   8.036  -1.609  -1.577  C4   V6H   4  
V6H  C5   C5   C  0  1  N  N  N   -2.066  22.075   9.154   8.548  -3.053  -1.382  C5   V6H   5  
V6H  C7   C6   C  0  1  N  N  N   -2.688  20.238  10.576   8.034  -1.976   0.716  C7   V6H   6  
V6H  C9   C7   C  0  1  Y  N  N   -8.564  23.730  14.969   0.176  -0.657   0.078  C9   V6H   7  
V6H  F1   F1   F  0  1  N  N  N  -14.532  23.684  17.718  -5.216  -1.541  -2.411  F1   V6H   8  
V6H  C17  C8   C  0  1  Y  N  N  -13.688  23.038  18.546  -5.873  -1.934  -1.298  C17  V6H   9  
V6H  C16  C9   C  0  1  Y  N  N  -14.131  21.909  19.184  -7.245  -2.119  -1.332  C16  V6H  10  
V6H  C15  C10  C  0  1  Y  N  N  -13.256  21.220  20.003  -7.917  -2.521  -0.194  C15  V6H  11  
V6H  C14  C11  C  0  1  Y  N  N  -11.986  21.706  20.144  -7.219  -2.739   0.981  C14  V6H  12  
V6H  F    F2   F  0  1  N  N  N  -11.116  21.011  20.911  -7.876  -3.132   2.095  F    V6H  13  
V6H  C13  C12  C  0  1  Y  N  N  -11.537  22.846  19.522  -5.847  -2.555   1.016  C13  V6H  14  
V6H  C12  C13  C  0  1  Y  N  N  -12.410  23.540  18.693  -5.174  -2.158  -0.124  C12  V6H  15  
V6H  C11  C14  C  0  1  N  N  N  -12.003  24.827  18.031  -3.680  -1.964  -0.088  C11  V6H  16  
V6H  N3   N1   N  0  1  N  N  N  -10.674  24.933  17.450  -3.377  -0.537   0.046  N3   V6H  17  
V6H  C10  C15  C  0  1  Y  N  N  -10.220  24.173  16.436  -2.065  -0.113   0.101  C10  V6H  18  
V6H  N2   N2   N  0  1  Y  N  N   -9.004  24.479  15.978  -1.094  -1.015   0.030  N2   V6H  19  
V6H  N4   N3   N  0  1  Y  N  N  -10.999  23.175  16.007  -1.814   1.182   0.222  N4   V6H  20  
V6H  C18  C16  C  0  1  Y  N  N  -10.531  22.394  15.015  -0.565   1.628   0.289  C18  V6H  21  
V6H  N5   N4   N  0  1  N  N  N  -11.291  21.360  14.609  -0.307   2.977   0.416  N5   V6H  22  
V6H  C19  C17  C  0  1  N  N  N  -11.147  19.998  15.107  -1.411   3.940   0.381  C19  V6H  23  
V6H  C23  C18  C  0  1  N  N  N  -11.703  19.848  16.514  -1.015   5.223   1.132  C23  V6H  24  
V6H  C22  C19  C  0  1  N  N  N  -13.193  19.584  16.310  -1.082   6.373   0.105  C22  V6H  25  
V6H  C21  C20  C  0  1  N  N  N  -13.374  19.165  14.863  -2.062   5.858  -0.978  C21  V6H  26  
V6H  C20  C21  C  0  1  N  N  N  -11.978  19.011  14.305  -1.705   4.354  -1.075  C20  V6H  27  
V6H  C8   C22  C  0  1  Y  N  N   -9.259  22.655  14.429   0.495   0.699   0.211  C8   V6H  28  
V6H  C    C23  C  0  1  N  N  N   -8.639  21.903  13.289   1.897   1.143   0.269  C    V6H  29  
V6H  O    O1   O  0  1  N  N  N   -9.289  21.058  12.680   2.156   2.313   0.481  O    V6H  30  
V6H  N    N5   N  0  1  N  N  N   -7.382  22.209  12.947   2.894   0.255   0.088  N    V6H  31  
V6H  N1   N6   N  0  1  N  N  N   -3.808  20.768  10.041   7.556  -1.182  -0.258  N1   V6H  32  
V6H  O1   O2   O  0  1  N  N  N   -2.674  19.359  11.428   7.799  -1.843   1.899  O1   V6H  33  
V6H  C6   C24  C  0  1  N  N  N   -1.493  20.901   9.942   8.906  -3.060   0.123  C6   V6H  34  
V6H  H1   H1   H  0  1  N  N  N   -6.914  20.224  12.493   4.494   1.126   1.127  H1   V6H  35  
V6H  H2   H2   H  0  1  N  N  N   -5.561  21.205  13.151   4.464   1.449  -0.623  H2   V6H  36  
V6H  H3   H3   H  0  1  N  N  N   -5.318  22.399  11.104   5.039  -1.251   0.678  H3   V6H  37  
V6H  H4   H4   H  0  1  N  N  N   -6.845  21.715  10.451   5.009  -0.928  -1.072  H4   V6H  38  
V6H  H5   H5   H  0  1  N  N  N   -5.710  20.066   9.507   6.846   0.716  -0.800  H5   V6H  39  
V6H  H6   H6   H  0  1  N  N  N   -5.120  19.538  11.119   6.876   0.392   0.950  H6   V6H  40  
V6H  H7   H7   H  0  1  N  N  N   -4.149  22.685   9.180   8.848  -0.963  -1.911  H7   V6H  41  
V6H  H8   H8   H  0  1  N  N  N   -3.771  21.382   8.003   7.219  -1.593  -2.299  H8   V6H  42  
V6H  H9   H9   H  0  1  N  N  N   -1.587  22.145   8.167   7.764  -3.778  -1.600  H9   V6H  43  
V6H  H10  H10  H  0  1  N  N  N   -1.915  23.016   9.703   9.431  -3.240  -1.993  H10  V6H  44  
V6H  H11  H11  H  0  1  N  N  N   -7.603  23.974  14.542   0.957  -1.400   0.020  H11  V6H  45  
V6H  H12  H12  H  0  1  N  N  N  -15.145  21.564  19.049  -7.790  -1.948  -2.249  H12  V6H  46  
V6H  H13  H13  H  0  1  N  N  N  -13.567  20.323  20.517  -8.987  -2.665  -0.221  H13  V6H  47  
V6H  H14  H14  H  0  1  N  N  N  -10.526  23.195  19.674  -5.303  -2.724   1.933  H14  V6H  48  
V6H  H15  H15  H  0  1  N  N  N  -12.087  25.620  18.789  -3.264  -2.505   0.761  H15  V6H  49  
V6H  H16  H16  H  0  1  N  N  N  -12.724  25.015  17.222  -3.242  -2.343  -1.011  H16  V6H  50  
V6H  H17  H17  H  0  1  N  N  N  -10.038  24.780  18.206  -4.098   0.110   0.097  H17  V6H  51  
V6H  H18  H18  H  0  1  N  N  N  -12.235  21.623  14.808   0.604   3.288   0.528  H18  V6H  52  
V6H  H19  H19  H  0  1  N  N  N  -10.091  19.691  15.092  -2.302   3.503   0.833  H19  V6H  53  
V6H  H20  H20  H  0  1  N  N  N  -11.226  19.003  17.033  -1.713   5.410   1.947  H20  V6H  54  
V6H  H21  H21  H  0  1  N  N  N  -11.547  20.770  17.094  -0.001   5.129   1.522  H21  V6H  55  
V6H  H22  H22  H  0  1  N  N  N  -13.770  20.498  16.514  -1.469   7.279   0.571  H22  V6H  56  
V6H  H23  H23  H  0  1  N  N  N  -13.530  18.780  16.981  -0.098   6.558  -0.326  H23  V6H  57  
V6H  H24  H24  H  0  1  N  N  N  -13.927  19.936  14.307  -3.096   5.990  -0.657  H24  V6H  58  
V6H  H25  H25  H  0  1  N  N  N  -13.918  18.211  14.805  -1.888   6.362  -1.928  H25  V6H  59  
V6H  H26  H26  H  0  1  N  N  N  -11.611  17.984  14.449  -0.822   4.212  -1.699  H26  V6H  60  
V6H  H27  H27  H  0  1  N  N  N  -11.956  19.261  13.234  -2.548   3.787  -1.471  H27  V6H  61  
V6H  H28  H28  H  0  1  N  N  N   -7.084  23.161  13.016   2.687  -0.678  -0.081  H28  V6H  62  
V6H  H29  H29  H  0  1  N  N  N   -0.973  20.201   9.271   8.668  -4.027   0.567  H29  V6H  63  
V6H  H30  H30  H  0  1  N  N  N   -0.794  21.257  10.713   9.960  -2.823   0.265  H30  V6H  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V6H  C4   C5   SING  N  N   1  
V6H  C4   N1   SING  N  N   2  
V6H  C5   C6   SING  N  N   3  
V6H  C6   C7   SING  N  N   4  
V6H  N1   C3   SING  N  N   5  
V6H  N1   C7   SING  N  N   6  
V6H  C3   C2   SING  N  N   7  
V6H  C7   O1   DOUB  N  N   8  
V6H  C2   C1   SING  N  N   9  
V6H  C1   N    SING  N  N  10  
V6H  O    C    DOUB  N  N  11  
V6H  N    C    SING  N  N  12  
V6H  C    C8   SING  N  N  13  
V6H  C20  C21  SING  N  N  14  
V6H  C20  C19  SING  N  N  15  
V6H  C8   C9   DOUB  Y  N  16  
V6H  C8   C18  SING  Y  N  17  
V6H  N5   C18  SING  N  N  18  
V6H  N5   C19  SING  N  N  19  
V6H  C21  C22  SING  N  N  20  
V6H  C9   N2   SING  Y  N  21  
V6H  C18  N4   DOUB  Y  N  22  
V6H  C19  C23  SING  N  N  23  
V6H  N2   C10  DOUB  Y  N  24  
V6H  N4   C10  SING  Y  N  25  
V6H  C22  C23  SING  N  N  26  
V6H  C10  N3   SING  N  N  27  
V6H  N3   C11  SING  N  N  28  
V6H  F1   C17  SING  N  N  29  
V6H  C11  C12  SING  N  N  30  
V6H  C17  C12  DOUB  Y  N  31  
V6H  C17  C16  SING  Y  N  32  
V6H  C12  C13  SING  Y  N  33  
V6H  C16  C15  DOUB  Y  N  34  
V6H  C13  C14  DOUB  Y  N  35  
V6H  C15  C14  SING  Y  N  36  
V6H  C14  F    SING  N  N  37  
V6H  C1   H1   SING  N  N  38  
V6H  C1   H2   SING  N  N  39  
V6H  C2   H3   SING  N  N  40  
V6H  C2   H4   SING  N  N  41  
V6H  C3   H5   SING  N  N  42  
V6H  C3   H6   SING  N  N  43  
V6H  C4   H7   SING  N  N  44  
V6H  C4   H8   SING  N  N  45  
V6H  C5   H9   SING  N  N  46  
V6H  C5   H10  SING  N  N  47  
V6H  C9   H11  SING  N  N  48  
V6H  C16  H12  SING  N  N  49  
V6H  C15  H13  SING  N  N  50  
V6H  C13  H14  SING  N  N  51  
V6H  C11  H15  SING  N  N  52  
V6H  C11  H16  SING  N  N  53  
V6H  N3   H17  SING  N  N  54  
V6H  N5   H18  SING  N  N  55  
V6H  C19  H19  SING  N  N  56  
V6H  C23  H20  SING  N  N  57  
V6H  C23  H21  SING  N  N  58  
V6H  C22  H22  SING  N  N  59  
V6H  C22  H23  SING  N  N  60  
V6H  C21  H24  SING  N  N  61  
V6H  C21  H25  SING  N  N  62  
V6H  C20  H26  SING  N  N  63  
V6H  C20  H27  SING  N  N  64  
V6H  N    H28  SING  N  N  65  
V6H  C6   H29  SING  N  N  66  
V6H  C6   H30  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V6H  InChI             InChI                 1.03   "InChI=1S/C24H30F2N6O2/c25-17-8-9-20(26)16(13-17)14-28-24-29-15-19(22(31-24)30-18-5-1-2-6-18)23(34)27-10-4-12-32-11-3-7-21(32)33/h8-9,13,15,18H,1-7,10-12,14H2,(H,27,34)(H2,28,29,30,31)"  
V6H  InChIKey          InChI                 1.03   CGCYACANDHXNLI-UHFFFAOYSA-N  
V6H  SMILES_CANONICAL  CACTVS                3.385  "Fc1ccc(F)c(CNc2ncc(C(=O)NCCCN3CCCC3=O)c(NC4CCCC4)n2)c1"  
V6H  SMILES            CACTVS                3.385  "Fc1ccc(F)c(CNc2ncc(C(=O)NCCCN3CCCC3=O)c(NC4CCCC4)n2)c1"  
V6H  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1F)CNc2ncc(c(n2)NC3CCCC3)C(=O)NCCCN4CCCC4=O)F"  
V6H  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1F)CNc2ncc(c(n2)NC3CCCC3)C(=O)NCCCN4CCCC4=O)F"  
#
_pdbx_chem_comp_identifier.comp_id          V6H
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-[[2,5-bis(fluoranyl)phenyl]methylamino]-4-(cyclopentylamino)-~{N}-[3-(2-oxidanylidenepyrrolidin-1-yl)propyl]pyrimidine-5-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V6H  "Create component"  2021-04-20  PDBE  
V6H  "Initial release"   2021-05-19  RCSB  
##
