data_T3H
#

_chem_comp.id                                   T3H
_chem_comp.name                                 "(2~{S})-1-[4-[[(~{E})-~{N},~{N}'-dimethylcarbamimidoyl]amino]phenyl]-~{N}-[[2-(3-methyl-1,2,3-triazol-4-yl)-1~{H}-benzimidazol-5-yl]methyl]pyrrolidine-2-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H30 N10 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-14
_chem_comp.pdbx_modified_date                   2021-10-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       486.572
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    T3H
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7B82
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T3H  C12   C1   C  0  1  N  N  N  15.994  -1.557   -6.338  -3.807   3.256  -0.757  C12   T3H   1  
T3H  C13   C2   C  0  1  N  N  N  16.997  -0.723   -5.972  -2.582   3.889  -1.462  C13   T3H   2  
T3H  C14   C3   C  0  1  N  N  N  16.356   0.282   -4.980  -1.647   2.662  -1.627  C14   T3H   3  
T3H  C15   C4   C  0  1  N  N  S  14.828   0.303   -5.367  -1.912   1.848  -0.343  C15   T3H   4  
T3H  O17   O1   O  0  1  N  N  N  15.294   1.957   -7.005  -1.160   2.644   1.748  O17   T3H   5  
T3H  C19   C5   C  0  1  N  N  N  13.032   3.322   -7.082   1.472   2.168   1.418  C19   T3H   6  
T3H  C23   C6   C  0  1  Y  N  N   9.048   4.849   -7.768   5.307   1.054  -0.122  C23   T3H   7  
T3H  C25   C7   C  0  1  Y  N  N   8.537   6.358   -9.269   6.399  -0.868   0.020  C25   T3H   8  
T3H  C16   C8   C  0  1  N  N  N  14.516   1.539   -6.254  -0.851   2.151   0.684  C16   T3H   9  
T3H  C20   C9   C  0  1  Y  N  N  11.546   3.780   -7.218   2.822   1.767   0.880  C20   T3H  10  
T3H  C01   C10  C  0  1  N  N  N   9.196  -4.168  -10.584  -8.816  -1.739  -2.245  C01   T3H  11  
T3H  C03   C11  C  0  1  N  N  N   9.067  -3.856   -8.187  -7.607  -2.360  -0.268  C03   T3H  12  
T3H  C05   C12  C  0  1  N  N  N   7.140  -4.837   -6.848  -8.493  -4.164   1.150  C05   T3H  13  
T3H  C07   C13  C  0  1  Y  N  N  10.806  -2.572   -6.693  -5.762  -1.044   0.537  C07   T3H  14  
T3H  C08   C14  C  0  1  Y  N  N  11.955  -3.160   -7.221  -4.420  -1.155   0.879  C08   T3H  15  
T3H  C09   C15  C  0  1  Y  N  N  13.185  -2.552   -7.051  -3.584  -0.063   0.756  C09   T3H  16  
T3H  C10   C16  C  0  1  Y  N  N  13.268  -1.354   -6.324  -4.084   1.146   0.290  C10   T3H  17  
T3H  C21   C17  C  0  1  Y  N  N  10.438   3.316   -6.465   3.578   2.684   0.165  C21   T3H  18  
T3H  C22   C18  C  0  1  Y  N  N   9.158   3.867   -6.743   4.815   2.333  -0.334  C22   T3H  19  
T3H  C26   C19  C  0  1  Y  N  N   7.812   7.247  -10.017   7.441  -1.900  -0.130  C26   T3H  20  
T3H  C27   C20  C  0  1  Y  N  N   6.447   7.468   -9.881   7.374  -3.207   0.272  C27   T3H  21  
T3H  C31   C21  C  0  1  N  N  N   9.664   8.176  -11.523   9.211  -0.522  -1.290  C31   T3H  22  
T3H  C33   C22  C  0  1  Y  N  N  10.165   5.263   -8.464   4.544   0.119   0.601  C33   T3H  23  
T3H  C34   C23  C  0  1  Y  N  N  11.423   4.719   -8.202   3.293   0.493   1.100  C34   T3H  24  
T3H  C35   C24  C  0  1  Y  N  N  12.126  -0.773   -5.771  -5.425   1.257  -0.052  C35   T3H  25  
T3H  C36   C25  C  0  1  Y  N  N  10.885  -1.390   -5.946  -6.261   0.165   0.071  C36   T3H  26  
T3H  N02   N1   N  0  1  N  N  N   9.700  -3.637   -9.283  -7.690  -1.593  -1.319  N02   T3H  27  
T3H  N04   N2   N  0  1  N  N  N   7.807  -4.633   -8.146  -8.515  -3.376  -0.085  N04   T3H  28  
T3H  N06   N3   N  0  1  N  N  N   9.539  -3.315   -6.877  -6.609  -2.153   0.657  N06   T3H  29  
T3H  N11   N4   N  0  1  N  N  N  14.587  -0.748   -6.149  -3.236   2.252   0.165  N11   T3H  30  
T3H  N18   N5   N  0  1  N  N  N  13.205   2.162   -6.175   0.441   1.874   0.420  N18   T3H  31  
T3H  N24   N6   N  0  1  Y  N  N   8.031   5.580   -8.296   6.477   0.408  -0.475  N24   T3H  32  
T3H  N28   N7   N  0  1  Y  N  N   6.115   8.406  -10.760   8.537  -3.765  -0.067  N28   T3H  33  
T3H  N29   N8   N  0  1  Y  N  N   7.244   8.771  -11.446   9.281  -2.886  -0.637  N29   T3H  34  
T3H  N30   N9   N  0  1  Y  N  N   8.285   8.038  -10.993   8.674  -1.754  -0.706  N30   T3H  35  
T3H  N32   N10  N  0  1  Y  N  N   9.850   6.179   -9.378   5.261  -1.030   0.652  N32   T3H  36  
T3H  H122  H1   H  0  0  N  N  N  16.000  -2.454   -5.701  -4.358   4.014  -0.199  H122  T3H  37  
T3H  H121  H2   H  0  0  N  N  N  16.118  -1.854   -7.390  -4.458   2.774  -1.487  H121  T3H  38  
T3H  H132  H3   H  0  0  N  N  N  17.805  -1.285   -5.482  -2.859   4.302  -2.431  H132  T3H  39  
T3H  H131  H4   H  0  0  N  N  N  17.398  -0.195   -6.850  -2.120   4.650  -0.833  H131  T3H  40  
T3H  H142  H5   H  0  0  N  N  N  16.489  -0.058   -3.942  -1.919   2.087  -2.511  H142  T3H  41  
T3H  H141  H6   H  0  0  N  N  N  16.800   1.281   -5.098  -0.604   2.977  -1.679  H141  T3H  42  
T3H  H151  H7   H  0  0  N  N  N  14.212   0.326   -4.456  -1.912   0.783  -0.573  H151  T3H  43  
T3H  H191  H8   H  0  0  N  N  N  13.405   3.045   -8.079   1.264   1.610   2.331  H191  T3H  44  
T3H  H192  H9   H  0  0  N  N  N  13.623   4.163   -6.690   1.472   3.236   1.638  H192  T3H  45  
T3H  H012  H10  H  0  0  N  N  N   9.880  -3.870  -11.392  -8.859  -2.766  -2.605  H012  T3H  46  
T3H  H011  H11  H  0  0  N  N  N   9.142  -5.266  -10.536  -9.745  -1.495  -1.728  H011  T3H  47  
T3H  H013  H12  H  0  0  N  N  N   8.194  -3.760  -10.783  -8.682  -1.063  -3.089  H013  T3H  48  
T3H  H053  H13  H  0  0  N  N  N   6.225  -5.430   -6.994  -7.501  -4.592   1.291  H053  T3H  49  
T3H  H051  H14  H  0  0  N  N  N   7.818  -5.372   -6.167  -8.735  -3.520   1.996  H051  T3H  50  
T3H  H052  H15  H  0  0  N  N  N   6.879  -3.861   -6.413  -9.229  -4.965   1.083  H052  T3H  51  
T3H  H081  H16  H  0  0  N  N  N  11.884  -4.091   -7.763  -4.032  -2.095   1.242  H081  T3H  52  
T3H  H091  H17  H  0  0  N  N  N  14.075  -2.995   -7.474  -2.541  -0.150   1.022  H091  T3H  53  
T3H  H211  H18  H  0  0  N  N  N  10.563   2.564   -5.700   3.195   3.680  -0.002  H211  T3H  54  
T3H  H221  H19  H  0  0  N  N  N   8.288   3.548   -6.189   5.398   3.053  -0.888  H221  T3H  55  
T3H  H271  H20  H  0  0  N  N  N   5.782   6.971   -9.191   6.544  -3.691   0.767  H271  T3H  56  
T3H  H311  H21  H  0  0  N  N  N   9.680   8.944  -12.310   8.863  -0.426  -2.319  H311  T3H  57  
T3H  H313  H22  H  0  0  N  N  N  10.342   8.472  -10.709   8.869   0.335  -0.709  H313  T3H  58  
T3H  H312  H23  H  0  0  N  N  N   9.993   7.214  -11.943  10.300  -0.558  -1.276  H312  T3H  59  
T3H  H341  H24  H  0  0  N  N  N  12.286   5.036   -8.769   2.698  -0.216   1.657  H341  T3H  60  
T3H  H351  H25  H  0  0  N  N  N  12.201   0.148   -5.211  -5.814   2.197  -0.414  H351  T3H  61  
T3H  H361  H26  H  0  0  N  N  N   9.996  -0.960   -5.510  -7.305   0.252  -0.195  H361  T3H  62  
T3H  H041  H27  H  0  0  N  N  N   7.416  -5.013   -8.984  -9.169  -3.572  -0.774  H041  T3H  63  
T3H  H061  H28  H  0  0  N  N  N   8.963  -3.464   -6.074  -6.494  -2.775   1.392  H061  T3H  64  
T3H  H181  H29  H  0  0  N  N  N  12.484   1.837   -5.563   0.689   1.480  -0.431  H181  T3H  65  
T3H  H241  H30  H  0  0  N  N  N   7.073   5.545   -8.011   7.213   0.785  -0.981  H241  T3H  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T3H  C31  N30   SING  N  N   1  
T3H  N29  N30   SING  Y  N   2  
T3H  N29  N28   DOUB  Y  N   3  
T3H  N30  C26   SING  Y  N   4  
T3H  N28  C27   SING  Y  N   5  
T3H  C01  N02   SING  N  N   6  
T3H  C26  C27   DOUB  Y  N   7  
T3H  C26  C25   SING  N  N   8  
T3H  N32  C25   DOUB  Y  N   9  
T3H  N32  C33   SING  Y  N  10  
T3H  N02  C03   DOUB  N  N  11  
T3H  C25  N24   SING  Y  N  12  
T3H  C33  C34   DOUB  Y  N  13  
T3H  C33  C23   SING  Y  N  14  
T3H  N24  C23   SING  Y  N  15  
T3H  C34  C20   SING  Y  N  16  
T3H  C03  N04   SING  N  N  17  
T3H  C03  N06   SING  N  N  18  
T3H  N04  C05   SING  N  N  19  
T3H  C23  C22   DOUB  Y  N  20  
T3H  C08  C09   DOUB  Y  N  21  
T3H  C08  C07   SING  Y  N  22  
T3H  C20  C19   SING  N  N  23  
T3H  C20  C21   DOUB  Y  N  24  
T3H  C19  N18   SING  N  N  25  
T3H  C09  C10   SING  Y  N  26  
T3H  O17  C16   DOUB  N  N  27  
T3H  N06  C07   SING  N  N  28  
T3H  C22  C21   SING  Y  N  29  
T3H  C07  C36   DOUB  Y  N  30  
T3H  C12  N11   SING  N  N  31  
T3H  C12  C13   SING  N  N  32  
T3H  C10  N11   SING  N  N  33  
T3H  C10  C35   DOUB  Y  N  34  
T3H  C16  N18   SING  N  N  35  
T3H  C16  C15   SING  N  N  36  
T3H  N11  C15   SING  N  N  37  
T3H  C13  C14   SING  N  N  38  
T3H  C36  C35   SING  Y  N  39  
T3H  C15  C14   SING  N  N  40  
T3H  C12  H122  SING  N  N  41  
T3H  C12  H121  SING  N  N  42  
T3H  C13  H132  SING  N  N  43  
T3H  C13  H131  SING  N  N  44  
T3H  C14  H142  SING  N  N  45  
T3H  C14  H141  SING  N  N  46  
T3H  C15  H151  SING  N  N  47  
T3H  C19  H191  SING  N  N  48  
T3H  C19  H192  SING  N  N  49  
T3H  C01  H012  SING  N  N  50  
T3H  C01  H011  SING  N  N  51  
T3H  C01  H013  SING  N  N  52  
T3H  C05  H053  SING  N  N  53  
T3H  C05  H051  SING  N  N  54  
T3H  C05  H052  SING  N  N  55  
T3H  C08  H081  SING  N  N  56  
T3H  C09  H091  SING  N  N  57  
T3H  C21  H211  SING  N  N  58  
T3H  C22  H221  SING  N  N  59  
T3H  C27  H271  SING  N  N  60  
T3H  C31  H311  SING  N  N  61  
T3H  C31  H313  SING  N  N  62  
T3H  C31  H312  SING  N  N  63  
T3H  C34  H341  SING  N  N  64  
T3H  C35  H351  SING  N  N  65  
T3H  C36  H361  SING  N  N  66  
T3H  N04  H041  SING  N  N  67  
T3H  N06  H061  SING  N  N  68  
T3H  N18  H181  SING  N  N  69  
T3H  N24  H241  SING  N  N  70  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T3H  InChI             InChI                 1.03   "InChI=1S/C25H30N10O/c1-26-25(27-2)30-17-7-9-18(10-8-17)35-12-4-5-21(35)24(36)28-14-16-6-11-19-20(13-16)32-23(31-19)22-15-29-33-34(22)3/h6-11,13,15,21H,4-5,12,14H2,1-3H3,(H,28,36)(H,31,32)(H2,26,27,30)/t21-/m0/s1"  
T3H  InChIKey          InChI                 1.03   MXOKQNYTQUSCFY-NRFANRHFSA-N  
T3H  SMILES_CANONICAL  CACTVS                3.385  "CNC(Nc1ccc(cc1)N2CCC[C@H]2C(=O)NCc3ccc4[nH]c(nc4c3)c5cnnn5C)=NC"  
T3H  SMILES            CACTVS                3.385  "CNC(Nc1ccc(cc1)N2CCC[CH]2C(=O)NCc3ccc4[nH]c(nc4c3)c5cnnn5C)=NC"  
T3H  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN/C(=N\C)/Nc1ccc(cc1)N2CCC[C@H]2C(=O)NCc3ccc4c(c3)nc([nH]4)c5cnnn5C"  
T3H  SMILES            "OpenEye OEToolkits"  2.0.7  "CNC(=NC)Nc1ccc(cc1)N2CCCC2C(=O)NCc3ccc4c(c3)nc([nH]4)c5cnnn5C"  
#
_pdbx_chem_comp_identifier.comp_id          T3H
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-1-[4-[[(~{E})-~{N},~{N}'-dimethylcarbamimidoyl]amino]phenyl]-~{N}-[[2-(3-methyl-1,2,3-triazol-4-yl)-1~{H}-benzimidazol-5-yl]methyl]pyrrolidine-2-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T3H  "Create component"  2020-12-14  PDBE  
T3H  "Initial release"   2021-10-20  RCSB  
##
