data_S8H
# 
_chem_comp.id                                    S8H 
_chem_comp.name                                  "(2~{S})-2-azanyl-5-oxidanylidene-5-[[(2~{S})-1-oxidanylidene-1-[(2-oxidanylidene-2-propan-2-yloxy-ethyl)amino]-3-sulfanyl-propan-2-yl]amino]pentanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H23 N3 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-11-11 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        349.403 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S8H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7AX6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S8H N1  N1  N 0 1 N N N N N N 18.214 -17.436 -3.178 -2.682 -0.092 0.125  N1  S8H 1  
S8H N3  N2  N 0 1 N N N N N N 18.154 -11.230 -6.648 6.153  -0.373 1.626  N3  S8H 2  
S8H C4  C1  C 0 1 N N N N N N 17.849 -18.577 -1.036 -5.098 -0.255 -0.036 C4  S8H 3  
S8H C5  C2  C 0 1 N N N N N N 17.997 -18.710 -2.527 -3.850 -0.876 0.536  C5  S8H 4  
S8H C6  C3  C 0 1 N N N N N N 18.483 -17.362 -4.482 -1.448 -0.466 0.516  C6  S8H 5  
S8H C7  C4  C 0 1 N N S N N N 18.440 -15.990 -5.144 -0.247 0.340  0.094  C7  S8H 6  
S8H C8  C5  C 0 1 N N N N N N 17.010 -15.472 -5.173 -0.384 1.771  0.618  C8  S8H 7  
S8H C10 C6  C 0 1 N N N N N N 20.243 -12.904 -5.332 3.404  -0.694 0.602  C10 S8H 8  
S8H C13 C7  C 0 1 N N N N N N 18.523 -13.269 -8.014 7.030  -0.680 -0.619 C13 S8H 9  
S8H C1  C8  C 0 1 N N N N N N 19.064 -19.340 1.543  -7.729 -0.744 -1.756 C1  S8H 10 
S8H C11 C9  C 0 1 N N N N N N 20.433 -12.251 -6.699 4.603  -0.316 -0.269 C11 S8H 11 
S8H C12 C10 C 0 1 N N S N N N 19.144 -11.968 -7.483 5.871  -0.950 0.305  C12 S8H 12 
S8H C2  C11 C 0 1 N N N N N N 19.039 -17.943 0.963  -7.456 -0.156 -0.371 C2  S8H 13 
S8H C3  C12 C 0 1 N N N N N N 20.275 -17.127 1.275  -8.673 -0.381 0.529  C3  S8H 14 
S8H C9  C13 C 0 1 N N N N N N 20.311 -14.417 -5.266 2.154  -0.069 0.037  C9  S8H 15 
S8H N2  N3  N 0 1 N N N N N N 19.332 -15.002 -4.571 0.967  -0.267 0.644  N2  S8H 16 
S8H O1  O1  O 0 1 N N N N N N 18.968 -18.074 -0.493 -6.296 -0.808 0.212  O1  S8H 17 
S8H O2  O2  O 0 1 N N N N N N 16.879 -18.891 -0.406 -5.021 0.740  -0.716 O2  S8H 18 
S8H O3  O3  O 0 1 N N N N N N 18.718 -18.341 -5.188 -1.304 -1.451 1.209  O3  S8H 19 
S8H O4  O4  O 0 1 N N N N N N 21.203 -15.063 -5.815 2.217  0.612  -0.965 O4  S8H 20 
S8H O5  O5  O 0 1 N N N N N N 17.335 -13.500 -7.721 7.197  -1.426 -1.722 O5  S8H 21 
S8H O6  O6  O 0 1 N N N N N N 19.257 -14.008 -8.705 7.810  0.207  -0.366 O6  S8H 22 
S8H S1  S1  S 0 1 N N N N N N 16.443 -14.578 -3.695 0.986  2.780  -0.014 S1  S8H 23 
S8H H10 H1  H 0 1 N N N N N N 18.161 -16.595 -2.640 -2.797 0.693  -0.432 H10 S8H 24 
S8H H21 H2  H 0 1 N N N N N N 18.568 -10.386 -6.308 6.949  -0.821 2.055  H21 S8H 25 
S8H H22 H3  H 0 1 N N N N N N 17.351 -11.008 -7.201 6.290  0.625  1.562  H22 S8H 26 
S8H H9  H5  H 0 1 N N N N N N 17.080 -19.162 -2.934 -3.750 -1.897 0.167  H9  S8H 27 
S8H H8  H6  H 0 1 N N N N N N 18.855 -19.365 -2.739 -3.915 -0.888 1.624  H8  S8H 28 
S8H H11 H7  H 0 1 N N N N N N 18.742 -16.138 -6.191 -0.184 0.356  -0.994 H11 S8H 29 
S8H H12 H8  H 0 1 N N N N N N 16.918 -14.791 -6.032 -1.331 2.193  0.281  H12 S8H 30 
S8H H13 H9  H 0 1 N N N N N N 16.344 -16.336 -5.317 -0.356 1.764  1.707  H13 S8H 31 
S8H H17 H10 H 0 1 N N N N N N 21.025 -12.509 -4.666 3.293  -1.778 0.617  H17 S8H 32 
S8H H16 H11 H 0 1 N N N N N N 19.254 -12.601 -4.956 3.563  -0.332 1.618  H16 S8H 33 
S8H H2  H12 H 0 1 N N N N N N 19.117 -19.281 2.640  -7.921 -1.814 -1.665 H2  S8H 34 
S8H H3  H13 H 0 1 N N N N N N 18.149 -19.875 1.249  -8.599 -0.255 -2.194 H3  S8H 35 
S8H H1  H14 H 0 1 N N N N N N 19.943 -19.880 1.162  -6.862 -0.584 -2.397 H1  S8H 36 
S8H H18 H15 H 0 1 N N N N N N 21.060 -12.918 -7.309 4.443  -0.678 -1.285 H18 S8H 37 
S8H H19 H16 H 0 1 N N N N N N 20.954 -11.294 -6.548 4.714  0.768  -0.284 H19 S8H 38 
S8H H20 H17 H 0 1 N N N N N N 19.406 -11.341 -8.348 5.727  -2.026 0.403  H20 S8H 39 
S8H H4  H18 H 0 1 N N N N N N 18.151 -17.412 1.335  -7.264 0.914  -0.462 H4  S8H 40 
S8H H6  H19 H 0 1 N N N N N N 20.368 -17.003 2.364  -8.865 -1.450 0.619  H6  S8H 41 
S8H H7  H20 H 0 1 N N N N N N 21.164 -17.646 0.888  -8.478 0.039  1.515  H7  S8H 42 
S8H H5  H21 H 0 1 N N N N N N 20.191 -16.139 0.800  -9.543 0.109  0.091  H5  S8H 43 
S8H H15 H22 H 0 1 N N N N N N 19.209 -14.747 -3.612 0.917  -0.812 1.445  H15 S8H 44 
S8H H14 H23 H 0 1 N N N N N N 17.069 -14.328 -8.104 7.955  -1.216 -2.284 H14 S8H 45 
S8H H24 H24 H 0 1 N N N N N N 15.221 -14.272 -4.016 0.740  3.991  0.518  H24 S8H 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S8H O6  C13 DOUB N N 1  
S8H C13 O5  SING N N 2  
S8H C13 C12 SING N N 3  
S8H C12 C11 SING N N 4  
S8H C12 N3  SING N N 5  
S8H C11 C10 SING N N 6  
S8H O4  C9  DOUB N N 7  
S8H C10 C9  SING N N 8  
S8H C9  N2  SING N N 9  
S8H O3  C6  DOUB N N 10 
S8H C8  C7  SING N N 11 
S8H C8  S1  SING N N 12 
S8H C7  N2  SING N N 13 
S8H C7  C6  SING N N 14 
S8H C6  N1  SING N N 15 
S8H N1  C5  SING N N 16 
S8H C5  C4  SING N N 17 
S8H C4  O1  SING N N 18 
S8H C4  O2  DOUB N N 19 
S8H O1  C2  SING N N 20 
S8H C2  C3  SING N N 21 
S8H C2  C1  SING N N 22 
S8H N1  H10 SING N N 23 
S8H N3  H21 SING N N 24 
S8H N3  H22 SING N N 25 
S8H C5  H9  SING N N 26 
S8H C5  H8  SING N N 27 
S8H C7  H11 SING N N 28 
S8H C8  H12 SING N N 29 
S8H C8  H13 SING N N 30 
S8H C10 H17 SING N N 31 
S8H C10 H16 SING N N 32 
S8H C1  H2  SING N N 33 
S8H C1  H3  SING N N 34 
S8H C1  H1  SING N N 35 
S8H C11 H18 SING N N 36 
S8H C11 H19 SING N N 37 
S8H C12 H20 SING N N 38 
S8H C2  H4  SING N N 39 
S8H C3  H6  SING N N 40 
S8H C3  H7  SING N N 41 
S8H C3  H5  SING N N 42 
S8H N2  H15 SING N N 43 
S8H O5  H14 SING N N 44 
S8H S1  H24 SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S8H InChI            InChI                1.03  "InChI=1S/C13H23N3O6S/c1-7(2)22-11(18)5-15-12(19)9(6-23)16-10(17)4-3-8(14)13(20)21/h7-9,23H,3-6,14H2,1-2H3,(H,15,19)(H,16,17)(H,20,21)/t8-,9+/m0/s1" 
S8H InChIKey         InChI                1.03  MVNCPACIPXNJIW-DTWKUNHWSA-N                                                                                                                          
S8H SMILES_CANONICAL CACTVS               3.385 "CC(C)OC(=O)CNC(=O)[C@@H](CS)NC(=O)CC[C@H](N)C(O)=O"                                                                                                 
S8H SMILES           CACTVS               3.385 "CC(C)OC(=O)CNC(=O)[CH](CS)NC(=O)CC[CH](N)C(O)=O"                                                                                                    
S8H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)OC(=O)CNC(=O)[C@@H](CS)NC(=O)CC[C@@H](C(=O)O)N"                                                                                                
S8H SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)OC(=O)CNC(=O)C(CS)NC(=O)CCC(C(=O)O)N"                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           S8H 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-5-oxidanylidene-5-[[(2~{S})-1-oxidanylidene-1-[(2-oxidanylidene-2-propan-2-yloxy-ethyl)amino]-3-sulfanyl-propan-2-yl]amino]pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S8H "Create component" 2020-11-11 PDBE 
S8H "Initial release"  2020-12-02 RCSB 
S8H "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            S8H 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               S1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
