data_S7H
# 
_chem_comp.id                                    S7H 
_chem_comp.name                                  "1-[(2~{R})-2-oxidanylpropyl]-3-[[(2~{R})-oxiran-2-yl]methyl]-5-[[(2~{S})-oxiran-2-yl]methyl]-1,3,5-triazinane-2,4,6-trione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H17 N3 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-11-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        299.280 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S7H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7AQJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S7H N10  N1  N 0 1 N N N N N N 7.538  -1.547 23.732 1.357  0.036  0.521  N10  S7H 1  
S7H C11  C1  C 0 1 N N N N N N 6.690  -2.100 24.923 2.789  0.014  0.826  C11  S7H 2  
S7H C12  C2  C 0 1 N N R N N N 5.820  -1.006 25.505 3.562  -0.502 -0.389 C12  S7H 3  
S7H C13  C3  C 0 1 N N N N N N 5.891  0.440  24.950 5.079  -0.656 -0.258 C13  S7H 4  
S7H C18  C4  C 0 1 N N N N N N 11.180 -0.195 23.069 -1.549 -2.201 0.779  C18  S7H 5  
S7H C19  C5  C 0 1 N N S N N N 11.370 0.823  24.219 -1.553 -3.125 -0.441 C19  S7H 6  
S7H C20  C6  C 0 1 N N N N N N 10.875 2.270  23.941 -2.412 -4.389 -0.375 C20  S7H 7  
S7H C02  C7  C 0 1 N N N N N N 9.120  -0.457 21.568 -1.277 0.073  -0.051 C02  S7H 8  
S7H C04  C8  C 0 1 N N N N N N 7.150  -0.632 19.872 -1.120 2.352  -0.900 C04  S7H 9  
S7H C05  C9  C 0 1 N N R N N N 7.045  -1.949 19.004 -1.610 3.280  0.213  C05  S7H 10 
S7H C06  C10 C 0 1 N N N N N N 8.243  -2.907 19.257 -2.241 4.529  -0.404 C06  S7H 11 
S7H C08  C11 C 0 1 N N N N N N 6.957  -1.361 22.394 0.801  1.137  -0.023 C08  S7H 12 
S7H C15  C12 C 0 1 N N N N N N 8.916  -1.154 23.952 0.596  -1.046 0.779  C15  S7H 13 
S7H N03  N2  N 0 1 N N N N N N 7.751  -0.817 21.308 -0.516 1.155  -0.309 N03  S7H 14 
S7H N17  N3  N 0 1 N N N N N N 9.716  -0.617 22.864 -0.722 -1.025 0.498  N17  S7H 15 
S7H O01  O1  O 0 1 N N N N N N 9.811  0.006  20.658 -2.464 0.089  -0.313 O01  S7H 16 
S7H O07  O2  O 0 1 N N N N N N 5.851  -2.610 19.334 -2.582 2.598  1.008  O07  S7H 17 
S7H O09  O3  O 0 1 N N N N N N 5.781  -1.671 22.176 1.487  2.113  -0.256 O09  S7H 18 
S7H O14  O4  O 0 1 N N N N N N 6.565  0.079  26.200 4.480  0.392  -1.023 O14  S7H 19 
S7H O16  O5  O 0 1 N N N N N N 9.416  -1.294 25.082 1.098  -2.040 1.265  O16  S7H 20 
S7H O21  O6  O 0 1 N N N N N N 10.163 1.381  24.868 -2.773 -3.259 -1.171 O21  S7H 21 
S7H H112 H1  H 0 0 N N N N N N 6.050  -2.919 24.563 3.125  1.023  1.069  H112 S7H 22 
S7H H111 H2  H 0 0 N N N N N N 7.366  -2.479 25.704 2.970  -0.643 1.677  H111 S7H 23 
S7H H121 H3  H 0 0 N N N N N N 4.856  -1.314 25.936 3.031  -1.215 -1.019 H121 S7H 24 
S7H H131 H4  H 0 0 N N N N N N 6.481  0.657  24.047 5.535  -0.391 0.696  H131 S7H 25 
S7H H132 H5  H 0 0 N N N N N N 4.999  1.084  24.969 5.555  -1.473 -0.800 H132 S7H 26 
S7H H181 H6  H 0 0 N N N N N N 11.773 -1.093 23.296 -2.569 -1.885 0.998  H181 S7H 27 
S7H H182 H7  H 0 0 N N N N N N 11.546 0.260  22.137 -1.142 -2.735 1.638  H182 S7H 28 
S7H H191 H8  H 0 0 N N N N N N 12.283 0.722  24.824 -0.618 -3.174 -1.000 H191 S7H 29 
S7H H202 H9  H 0 0 N N N N N N 11.440 3.132  24.324 -2.048 -5.278 -0.890 H202 S7H 30 
S7H H201 H10 H 0 0 N N N N N N 10.431 2.526  22.968 -2.980 -4.570 0.538  H201 S7H 31 
S7H H041 H11 H 0 0 N N N N N N 7.785  0.083  19.328 -1.963 2.061  -1.528 H041 S7H 32 
S7H H042 H12 H 0 0 N N N N N N 6.138  -0.215 19.979 -0.379 2.872  -1.507 H042 S7H 33 
S7H H051 H13 H 0 0 N N N N N N 7.047  -1.661 17.942 -0.767 3.570  0.841  H051 S7H 34 
S7H H061 H14 H 0 0 N N N N N N 9.183  -2.396 19.001 -1.500 5.049  -1.010 H061 S7H 35 
S7H H062 H15 H 0 0 N N N N N N 8.262  -3.198 20.318 -3.084 4.238  -1.031 H062 S7H 36 
S7H H2   H16 H 0 1 N N N N N N 8.132  -3.805 18.632 -2.590 5.190  0.390  H2   S7H 37 
S7H H1   H17 H 0 1 N N N N N N 5.633  -2.437 20.242 -2.937 3.127  1.736  H1   S7H 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S7H C05 C06  SING N N 1  
S7H C05 O07  SING N N 2  
S7H C05 C04  SING N N 3  
S7H C04 N03  SING N N 4  
S7H O01 C02  DOUB N N 5  
S7H N03 C02  SING N N 6  
S7H N03 C08  SING N N 7  
S7H C02 N17  SING N N 8  
S7H O09 C08  DOUB N N 9  
S7H C08 N10  SING N N 10 
S7H N17 C18  SING N N 11 
S7H N17 C15  SING N N 12 
S7H C18 C19  SING N N 13 
S7H N10 C15  SING N N 14 
S7H N10 C11  SING N N 15 
S7H C20 C19  SING N N 16 
S7H C20 O21  SING N N 17 
S7H C15 O16  DOUB N N 18 
S7H C19 O21  SING N N 19 
S7H C11 C12  SING N N 20 
S7H C13 C12  SING N N 21 
S7H C13 O14  SING N N 22 
S7H C12 O14  SING N N 23 
S7H C11 H112 SING N N 24 
S7H C11 H111 SING N N 25 
S7H C12 H121 SING N N 26 
S7H C13 H131 SING N N 27 
S7H C13 H132 SING N N 28 
S7H C18 H181 SING N N 29 
S7H C18 H182 SING N N 30 
S7H C19 H191 SING N N 31 
S7H C20 H202 SING N N 32 
S7H C20 H201 SING N N 33 
S7H C04 H041 SING N N 34 
S7H C04 H042 SING N N 35 
S7H C05 H051 SING N N 36 
S7H C06 H061 SING N N 37 
S7H C06 H062 SING N N 38 
S7H C06 H2   SING N N 39 
S7H O07 H1   SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S7H InChI            InChI                1.03  "InChI=1S/C12H17N3O6/c1-7(16)2-13-10(17)14(3-8-5-20-8)12(19)15(11(13)18)4-9-6-21-9/h7-9,16H,2-6H2,1H3/t7-,8-,9+/m1/s1" 
S7H InChIKey         InChI                1.03  MRWWCVUTOFNJLM-HLTSFMKQSA-N                                                                                            
S7H SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)CN1C(=O)N(C[C@H]2CO2)C(=O)N(C[C@@H]3CO3)C1=O"                                                               
S7H SMILES           CACTVS               3.385 "C[CH](O)CN1C(=O)N(C[CH]2CO2)C(=O)N(C[CH]3CO3)C1=O"                                                                    
S7H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CN1C(=O)N(C(=O)N(C1=O)C[C@@H]2CO2)C[C@H]3CO3)O"                                                                
S7H SMILES           "OpenEye OEToolkits" 2.0.7 "CC(CN1C(=O)N(C(=O)N(C1=O)CC2CO2)CC3CO3)O"                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           S7H 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[(2~{R})-2-oxidanylpropyl]-3-[[(2~{R})-oxiran-2-yl]methyl]-5-[[(2~{S})-oxiran-2-yl]methyl]-1,3,5-triazinane-2,4,6-trione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S7H "Create component" 2020-11-10 PDBE 
S7H "Initial release"  2020-12-02 RCSB 
S7H "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            S7H 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C06 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
