data_RVH
# 
_chem_comp.id                                    RVH 
_chem_comp.name                                  "(2~{R})-~{N}-(1~{H}-benzimidazol-2-yl)-2-(3-oxidanylidene-1~{H}-isoindol-2-yl)propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H16 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-06 
_chem_comp.pdbx_modified_date                    2023-09-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        320.345 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RVH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BUA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RVH C1  C1  C 0 1 Y N N -61.539 25.190 -9.888  5.914  2.173  -0.079 C1  RVH 1  
RVH C2  C2  C 0 1 Y N N -61.445 25.277 -8.517  4.536  2.117  -0.095 C2  RVH 2  
RVH C3  C3  C 0 1 Y N N -62.436 24.651 -7.784  3.895  0.888  -0.106 C3  RVH 3  
RVH C4  C4  C 0 1 Y N N -63.483 23.957 -8.389  4.650  -0.297 -0.102 C4  RVH 4  
RVH C5  C5  C 0 1 Y N N -63.562 23.877 -9.772  6.045  -0.223 -0.086 C5  RVH 5  
RVH C6  C6  C 0 1 Y N N -62.581 24.499 -10.504 6.664  1.007  -0.081 C6  RVH 6  
RVH C9  C7  C 0 1 N N R -64.702 23.307 -2.691  -1.059 -1.906 -0.175 C9  RVH 7  
RVH C13 C8  C 0 1 N N N -65.375 24.757 -0.842  -2.556 -0.137 0.761  C13 RVH 8  
RVH C14 C9  C 0 1 Y N N -62.687 25.031 1.589   -5.437 0.507  -1.364 C14 RVH 9  
RVH C10 C10 C 0 1 N N N -63.235 23.776 -0.633  -3.269 -1.008 -1.230 C10 RVH 10 
RVH C11 C11 C 0 1 Y N N -63.495 24.710 0.509   -4.272 0.036  -0.804 C11 RVH 11 
RVH C12 C12 C 0 1 Y N N -64.744 25.279 0.376   -3.814 0.550  0.411  C12 RVH 12 
RVH C15 C13 C 0 1 Y N N -63.173 25.937 2.517   -6.162 1.496  -0.721 C15 RVH 13 
RVH C16 C14 C 0 1 Y N N -64.431 26.507 2.375   -5.718 2.013  0.483  C16 RVH 14 
RVH C17 C15 C 0 1 Y N N -65.235 26.186 1.300   -4.551 1.548  1.053  C17 RVH 15 
RVH C18 C16 C 0 1 N N N -64.323 21.824 -2.624  -1.090 -2.794 1.071  C18 RVH 16 
RVH C7  C17 C 0 1 Y N N -63.804 23.825 -6.281  2.546  -0.868 -0.128 C7  RVH 17 
RVH C8  C18 C 0 1 N N N -63.988 23.960 -3.861  0.188  -1.059 -0.156 C8  RVH 18 
RVH N1  N1  N 0 1 Y N N -64.330 23.431 -7.420  3.770  -1.332 -0.116 N1  RVH 19 
RVH N2  N2  N 0 1 Y N N -62.659 24.532 -6.427  2.567  0.497  -0.123 N2  RVH 20 
RVH N3  N3  N 0 1 N N N -64.340 23.462 -5.073  1.401  -1.646 -0.145 N3  RVH 21 
RVH N4  N4  N 0 1 N N N -64.452 23.957 -1.422  -2.239 -1.038 -0.185 N4  RVH 22 
RVH O1  O1  O 0 1 N N N -66.510 24.966 -1.281  -1.899 0.083  1.759  O1  RVH 23 
RVH O2  O2  O 0 1 N N N -63.147 24.829 -3.675  0.099  0.150  -0.153 O2  RVH 24 
RVH H1  H1  H 0 1 N N N -60.788 25.668 -10.500 6.412  3.131  -0.071 H1  RVH 25 
RVH H2  H2  H 0 1 N N N -60.636 25.809 -8.038  3.957  3.029  -0.097 H2  RVH 26 
RVH H3  H3  H 0 1 N N N -64.367 23.344 -10.256 6.635  -1.127 -0.083 H3  RVH 27 
RVH H4  H4  H 0 1 N N N -62.618 24.452 -11.582 7.743  1.063  -0.068 H4  RVH 28 
RVH H7  H5  H 0 1 N N N -65.782 23.357 -2.896  -1.060 -2.531 -1.067 H7  RVH 29 
RVH H10 H6  H 0 1 N N N -61.709 24.588 1.703   -5.785 0.105  -2.304 H10 RVH 30 
RVH H8  H7  H 0 1 N N N -63.127 22.737 -0.289  -3.752 -1.982 -1.308 H8  RVH 31 
RVH H9  H8  H 0 1 N N N -62.339 24.070 -1.199  -2.825 -0.732 -2.187 H9  RVH 32 
RVH H11 H9  H 0 1 N N N -62.562 26.205 3.367   -7.076 1.865  -1.162 H11 RVH 33 
RVH H12 H10 H 0 1 N N N -64.785 27.210 3.115   -6.288 2.785  0.979  H12 RVH 34 
RVH H13 H11 H 0 1 N N N -66.214 26.627 1.183   -4.208 1.954  1.993  H13 RVH 35 
RVH H16 H12 H 0 1 N N N -64.840 21.351 -1.776  -0.212 -3.440 1.079  H16 RVH 36 
RVH H15 H13 H 0 1 N N N -64.621 21.327 -3.559  -1.089 -2.168 1.963  H15 RVH 37 
RVH H14 H14 H 0 1 N N N -63.235 21.729 -2.489  -1.992 -3.406 1.058  H14 RVH 38 
RVH H5  H16 H 0 1 N N N -62.086 24.897 -5.694  1.794  1.084  -0.129 H5  RVH 39 
RVH H6  H17 H 0 1 N N N -65.057 22.765 -5.086  1.472  -2.613 -0.148 H6  RVH 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RVH C6  C1  DOUB Y N 1  
RVH C6  C5  SING Y N 2  
RVH C1  C2  SING Y N 3  
RVH C5  C4  DOUB Y N 4  
RVH C2  C3  DOUB Y N 5  
RVH C4  C3  SING Y N 6  
RVH C4  N1  SING Y N 7  
RVH C3  N2  SING Y N 8  
RVH N1  C7  DOUB Y N 9  
RVH N2  C7  SING Y N 10 
RVH C7  N3  SING N N 11 
RVH N3  C8  SING N N 12 
RVH C8  O2  DOUB N N 13 
RVH C8  C9  SING N N 14 
RVH C9  C18 SING N N 15 
RVH C9  N4  SING N N 16 
RVH N4  C13 SING N N 17 
RVH N4  C10 SING N N 18 
RVH O1  C13 DOUB N N 19 
RVH C13 C12 SING N N 20 
RVH C10 C11 SING N N 21 
RVH C12 C11 DOUB Y N 22 
RVH C12 C17 SING Y N 23 
RVH C11 C14 SING Y N 24 
RVH C17 C16 DOUB Y N 25 
RVH C14 C15 DOUB Y N 26 
RVH C16 C15 SING Y N 27 
RVH C1  H1  SING N N 28 
RVH C2  H2  SING N N 29 
RVH C5  H3  SING N N 30 
RVH C6  H4  SING N N 31 
RVH C9  H7  SING N N 32 
RVH C14 H10 SING N N 33 
RVH C10 H8  SING N N 34 
RVH C10 H9  SING N N 35 
RVH C15 H11 SING N N 36 
RVH C16 H12 SING N N 37 
RVH C17 H13 SING N N 38 
RVH C18 H16 SING N N 39 
RVH C18 H15 SING N N 40 
RVH C18 H14 SING N N 41 
RVH N2  H5  SING N N 42 
RVH N3  H6  SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RVH InChI            InChI                1.06    "InChI=1S/C18H16N4O2/c1-11(22-10-12-6-2-3-7-13(12)17(22)24)16(23)21-18-19-14-8-4-5-9-15(14)20-18/h2-9,11H,10H2,1H3,(H2,19,20,21,23)/t11-/m1/s1" 
RVH InChIKey         InChI                1.06    PWSSISUOJZBZFT-LLVKDONJSA-N                                                                                                                     
RVH SMILES_CANONICAL CACTVS               3.385   "C[C@@H](N1Cc2ccccc2C1=O)C(=O)Nc3[nH]c4ccccc4n3"                                                                                                
RVH SMILES           CACTVS               3.385   "C[CH](N1Cc2ccccc2C1=O)C(=O)Nc3[nH]c4ccccc4n3"                                                                                                  
RVH SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H](C(=O)Nc1[nH]c2ccccc2n1)N3Cc4ccccc4C3=O"                                                                                                 
RVH SMILES           "OpenEye OEToolkits" 3.1.0.0 "CC(C(=O)Nc1[nH]c2ccccc2n1)N3Cc4ccccc4C3=O"                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           RVH 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-~{N}-(1~{H}-benzimidazol-2-yl)-2-(3-oxidanylidene-1~{H}-isoindol-2-yl)propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RVH "Create component" 2022-12-06 PDBE 
RVH "Initial release"  2023-09-13 RCSB 
# 
