data_R8H
# 
_chem_comp.id                                    R8H 
_chem_comp.name                                  "(2~{R})-5-oxidanylidene-~{N}-[(2~{R},3~{S})-3-oxidanyl-4-oxidanylidene-1-phenyl-4-(pyridin-2-ylmethylamino)butan-2-yl]-1-(phenylmethyl)pyrrolidine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H30 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-09-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        486.562 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R8H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7AEH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R8H N1  N1  N 0 1 N N N N N N 5.203  -1.189 25.196 1.952  -1.646 0.361  N1  R8H 1  
R8H N3  N2  N 0 1 Y N N N N N 6.401  0.622  17.460 -6.315 -0.670 -0.679 N3  R8H 2  
R8H C4  C1  C 0 1 Y N N N N N 5.539  -6.793 23.733 0.736  2.905  -2.284 C4  R8H 3  
R8H C5  C2  C 0 1 Y N N N N N 4.775  -7.207 24.812 1.757  2.487  -3.116 C5  R8H 4  
R8H C6  C3  C 0 1 Y N N N N N 5.160  -6.890 26.092 2.941  2.021  -2.576 C6  R8H 5  
R8H C7  C4  C 0 1 Y N N N N N 6.309  -6.159 26.299 3.105  1.974  -1.204 C7  R8H 6  
R8H C8  C5  C 0 1 Y N N N N N 7.082  -5.752 25.221 2.083  2.392  -0.372 C8  R8H 7  
R8H C10 C6  C 0 1 N N R N N N 6.162  -1.442 24.119 1.146  -0.807 1.256  C10 R8H 8  
R8H C13 C7  C 0 1 N N N N N N 4.869  0.112  25.337 1.866  -2.944 0.700  C13 R8H 9  
R8H C15 C8  C 0 1 Y N N N N N 3.366  -2.754 25.810 4.180  -0.983 -0.335 C15 R8H 10 
R8H C17 C9  C 0 1 Y N N N N N 0.969  -2.564 25.967 6.447  -1.752 -0.374 C17 R8H 11 
R8H C20 C10 C 0 1 Y N N N N N 3.197  -3.909 25.059 4.550  0.065  0.487  C20 R8H 12 
R8H C21 C11 C 0 1 N N N N N N 7.194  -3.103 19.865 -3.157 1.432  1.561  C21 R8H 13 
R8H C22 C12 C 0 1 N N N N N N 7.626  -1.278 18.298 -4.596 -0.466 1.045  C22 R8H 14 
R8H C24 C13 C 0 1 Y N N N N N 6.031  0.065  19.753 -4.539 -2.204 -0.747 C24 R8H 15 
R8H C26 C14 C 0 1 Y N N N N N 4.810  1.851  18.762 -6.279 -2.298 -2.372 C26 R8H 16 
R8H O3  O1  O 0 1 N N N N N N 6.037  -3.238 19.503 -3.260 1.153  2.737  O3  R8H 17 
R8H N2  N3  N 0 1 N N N N N N 7.945  -2.063 19.483 -3.786 0.684  0.633  N2  R8H 18 
R8H C23 C15 C 0 1 Y N N N N N 6.657  -0.141 18.533 -5.186 -1.127 -0.173 C23 R8H 19 
R8H C27 C16 C 0 1 Y N N N N N 5.482  1.593  17.592 -6.869 -1.217 -1.744 C27 R8H 20 
R8H C25 C17 C 0 1 Y N N N N N 5.091  1.075  19.851 -5.091 -2.806 -1.868 C25 R8H 21 
R8H C   C18 C 0 1 N N S N N N 7.862  -4.180 20.715 -2.325 2.614  1.137  C   R8H 22 
R8H O   O2  O 0 1 N N N N N N 9.157  -3.737 21.065 -1.860 3.309  2.296  O   R8H 23 
R8H C1  C19 C 0 1 N N R N N N 7.023  -4.472 21.982 -1.126 2.128  0.320  C1  R8H 24 
R8H C2  C20 C 0 1 N N N N N N 7.573  -5.681 22.750 -0.215 3.313  -0.004 C2  R8H 25 
R8H C3  C21 C 0 1 Y N N N N N 6.710  -6.072 23.925 0.899  2.858  -0.912 C3  R8H 26 
R8H N   N4  N 0 1 N N N N N N 7.001  -3.318 22.874 -0.378 1.134  1.094  N   R8H 27 
R8H C9  C22 C 0 1 N N N N N N 5.910  -2.604 23.148 0.376  0.215  0.460  C9  R8H 28 
R8H O1  O3  O 0 1 N N N N N N 4.830  -2.809 22.609 0.436  0.210  -0.752 O1  R8H 29 
R8H O2  O4  O 0 1 N N N N N N 4.045  0.540  26.128 2.435  -3.850 0.128  O2  R8H 30 
R8H C12 C23 C 0 1 N N N N N N 5.703  0.918  24.386 0.958  -3.110 1.898  C12 R8H 31 
R8H C11 C24 C 0 1 N N N N N N 6.225  -0.098 23.380 0.175  -1.776 1.966  C11 R8H 32 
R8H C14 C25 C 0 1 N N N N N N 4.748  -2.231 26.118 2.743  -1.136 -0.762 C14 R8H 33 
R8H C19 C26 C 0 1 Y N N N N N 1.928  -4.385 24.765 5.868  0.205  0.878  C19 R8H 34 
R8H C18 C27 C 0 1 Y N N N N N 0.815  -3.712 25.218 6.817  -0.703 0.447  C18 R8H 35 
R8H C16 C28 C 0 1 Y N N N N N 2.236  -2.089 26.264 5.130  -1.888 -0.770 C16 R8H 36 
R8H H1  H1  H 0 1 N N N N N N 5.220  -7.034 22.730 -0.188 3.273  -2.705 H1  R8H 37 
R8H H2  H2  H 0 1 N N N N N N 3.875  -7.780 24.646 1.630  2.523  -4.188 H2  R8H 38 
R8H H3  H3  H 0 1 N N N N N N 4.564  -7.213 26.933 3.739  1.693  -3.226 H3  R8H 39 
R8H H4  H4  H 0 1 N N N N N N 6.609  -5.902 27.304 4.030  1.609  -0.783 H4  R8H 40 
R8H H5  H5  H 0 1 N N N N N N 7.982  -5.180 25.394 2.210  2.355  0.700  H5  R8H 41 
R8H H6  H6  H 0 1 N N N N N N 7.149  -1.608 24.575 1.786  -0.312 1.986  H6  R8H 42 
R8H H7  H7  H 0 1 N N N N N N 0.098  -2.033 26.323 7.189  -2.460 -0.714 H7  R8H 43 
R8H H8  H8  H 0 1 N N N N N N 4.064  -4.443 24.699 3.808  0.775  0.823  H8  R8H 44 
R8H H9  H9  H 0 1 N N N N N N 7.187  -1.953 17.548 -3.967 -1.180 1.578  H9  R8H 45 
R8H H10 H10 H 0 1 N N N N N N 8.562  -0.854 17.906 -5.398 -0.129 1.701  H10 R8H 46 
R8H H11 H11 H 0 1 N N N N N N 6.272  -0.550 20.608 -3.615 -2.573 -0.328 H11 R8H 47 
R8H H12 H12 H 0 1 N N N N N N 4.080  2.645  18.819 -6.737 -2.741 -3.243 H12 R8H 48 
R8H H13 H13 H 0 1 N N N N N N 8.748  -1.818 20.026 -3.704 0.907  -0.307 H13 R8H 49 
R8H H14 H14 H 0 1 N N N N N N 5.259  2.205  16.730 -7.795 -0.816 -2.130 H14 R8H 50 
R8H H15 H15 H 0 1 N N N N N N 4.580  1.250  20.786 -4.608 -3.649 -2.338 H15 R8H 51 
R8H H16 H16 H 0 1 N N N N N N 7.926  -5.104 20.122 -2.931 3.286  0.530  H16 R8H 52 
R8H H17 H17 H 0 1 N N N N N N 9.586  -4.398 21.595 -1.312 2.772  2.885  H17 R8H 53 
R8H H18 H18 H 0 1 N N N N N N 5.996  -4.704 21.665 -1.478 1.676  -0.608 H18 R8H 54 
R8H H19 H19 H 0 1 N N N N N N 7.636  -6.536 22.061 -0.794 4.091  -0.502 H19 R8H 55 
R8H H20 H20 H 0 1 N N N N N N 8.579  -5.434 23.120 0.208  3.710  0.919  H20 R8H 56 
R8H H21 H21 H 0 1 N N N N N N 7.860  -3.045 23.308 -0.426 1.138  2.063  H21 R8H 57 
R8H H22 H22 H 0 1 N N N N N N 6.536  1.404  24.915 0.271  -3.942 1.744  H22 R8H 58 
R8H H23 H23 H 0 1 N N N N N N 5.091  1.682  23.885 1.545  -3.264 2.803  H23 R8H 59 
R8H H24 H24 H 0 1 N N N N N N 7.260  0.138  23.091 0.011  -1.475 3.001  H24 R8H 60 
R8H H25 H25 H 0 1 N N N N N N 5.589  -0.118 22.483 -0.770 -1.846 1.427  H25 R8H 61 
R8H H26 H26 H 0 1 N N N N N N 5.456  -3.071 26.069 2.684  -1.835 -1.596 H26 R8H 62 
R8H H27 H27 H 0 1 N N N N N N 4.743  -1.815 27.136 2.351  -0.167 -1.071 H27 R8H 63 
R8H H28 H28 H 0 1 N N N N N N 1.812  -5.285 24.180 6.157  1.025  1.519  H28 R8H 64 
R8H H29 H29 H 0 1 N N N N N N -0.173 -4.081 24.988 7.847  -0.594 0.753  H29 R8H 65 
R8H H30 H30 H 0 1 N N N N N N 2.345  -1.192 26.855 4.842  -2.705 -1.416 H30 R8H 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R8H N3  C27 DOUB Y N 1  
R8H N3  C23 SING Y N 2  
R8H C27 C26 SING Y N 3  
R8H C22 C23 SING N N 4  
R8H C22 N2  SING N N 5  
R8H C23 C24 DOUB Y N 6  
R8H C26 C25 DOUB Y N 7  
R8H N2  C21 SING N N 8  
R8H O3  C21 DOUB N N 9  
R8H C24 C25 SING Y N 10 
R8H C21 C   SING N N 11 
R8H C   O   SING N N 12 
R8H C   C1  SING N N 13 
R8H C1  C2  SING N N 14 
R8H C1  N   SING N N 15 
R8H O1  C9  DOUB N N 16 
R8H C2  C3  SING N N 17 
R8H N   C9  SING N N 18 
R8H C9  C10 SING N N 19 
R8H C11 C10 SING N N 20 
R8H C11 C12 SING N N 21 
R8H C4  C3  DOUB Y N 22 
R8H C4  C5  SING Y N 23 
R8H C3  C8  SING Y N 24 
R8H C10 N1  SING N N 25 
R8H C12 C13 SING N N 26 
R8H C19 C20 DOUB Y N 27 
R8H C19 C18 SING Y N 28 
R8H C5  C6  DOUB Y N 29 
R8H C20 C15 SING Y N 30 
R8H N1  C13 SING N N 31 
R8H N1  C14 SING N N 32 
R8H C18 C17 DOUB Y N 33 
R8H C8  C7  DOUB Y N 34 
R8H C13 O2  DOUB N N 35 
R8H C15 C14 SING N N 36 
R8H C15 C16 DOUB Y N 37 
R8H C17 C16 SING Y N 38 
R8H C6  C7  SING Y N 39 
R8H C4  H1  SING N N 40 
R8H C5  H2  SING N N 41 
R8H C6  H3  SING N N 42 
R8H C7  H4  SING N N 43 
R8H C8  H5  SING N N 44 
R8H C10 H6  SING N N 45 
R8H C17 H7  SING N N 46 
R8H C20 H8  SING N N 47 
R8H C22 H9  SING N N 48 
R8H C22 H10 SING N N 49 
R8H C24 H11 SING N N 50 
R8H C26 H12 SING N N 51 
R8H N2  H13 SING N N 52 
R8H C27 H14 SING N N 53 
R8H C25 H15 SING N N 54 
R8H C   H16 SING N N 55 
R8H O   H17 SING N N 56 
R8H C1  H18 SING N N 57 
R8H C2  H19 SING N N 58 
R8H C2  H20 SING N N 59 
R8H N   H21 SING N N 60 
R8H C12 H22 SING N N 61 
R8H C12 H23 SING N N 62 
R8H C11 H24 SING N N 63 
R8H C11 H25 SING N N 64 
R8H C14 H26 SING N N 65 
R8H C14 H27 SING N N 66 
R8H C19 H28 SING N N 67 
R8H C18 H29 SING N N 68 
R8H C16 H30 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R8H InChI            InChI                1.03  "InChI=1S/C28H30N4O4/c33-25-15-14-24(32(25)19-21-11-5-2-6-12-21)27(35)31-23(17-20-9-3-1-4-10-20)26(34)28(36)30-18-22-13-7-8-16-29-22/h1-13,16,23-24,26,34H,14-15,17-19H2,(H,30,36)(H,31,35)/t23-,24-,26+/m1/s1" 
R8H InChIKey         InChI                1.03  LGWQYJCCERJRJX-MZKUHISZSA-N                                                                                                                                                                                     
R8H SMILES_CANONICAL CACTVS               3.385 "O[C@@H]([C@@H](Cc1ccccc1)NC(=O)[C@H]2CCC(=O)N2Cc3ccccc3)C(=O)NCc4ccccn4"                                                                                                                                       
R8H SMILES           CACTVS               3.385 "O[CH]([CH](Cc1ccccc1)NC(=O)[CH]2CCC(=O)N2Cc3ccccc3)C(=O)NCc4ccccn4"                                                                                                                                            
R8H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@H]([C@@H](C(=O)NCc2ccccn2)O)NC(=O)[C@H]3CCC(=O)N3Cc4ccccc4"                                                                                                                                      
R8H SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(C(C(=O)NCc2ccccn2)O)NC(=O)C3CCC(=O)N3Cc4ccccc4"                                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           R8H 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-5-oxidanylidene-~{N}-[(2~{R},3~{S})-3-oxidanyl-4-oxidanylidene-1-phenyl-4-(pyridin-2-ylmethylamino)butan-2-yl]-1-(phenylmethyl)pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R8H "Create component" 2020-09-18 PDBE 
R8H "Initial release"  2021-07-07 RCSB 
R8H "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            R8H 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
