data_Q8H
# 
_chem_comp.id                                    Q8H 
_chem_comp.name                                  "~{N}-(pyridin-3-ylmethyl)-2-selanyl-benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H12 N2 O Se" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-05-26 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        291.207 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Q8H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6Z4L 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Q8H N1  N1  N  0 1 Y N N N N N 12.204 -6.274 11.722 5.388  -0.163 -1.176 N1  Q8H 1  
Q8H C2  C1  C  0 1 Y N N N N N 10.049 1.572  16.406 -2.964 -2.938 -0.004 C2  Q8H 2  
Q8H C4  C2  C  0 1 Y N N N N N 11.761 0.717  14.749 -2.521 -0.584 -0.008 C4  Q8H 3  
Q8H C5  C3  C  0 1 Y N N N N N 11.546 -0.601 15.473 -1.150 -0.845 -0.003 C5  Q8H 4  
Q8H C6  C4  C  0 1 N N N N N N 12.334 -1.753 14.995 -0.181 0.272  0.004  C6  Q8H 5  
Q8H O   O1  O  0 1 N N N N N N 13.409 -1.490 14.458 -0.578 1.421  0.005  O   Q8H 6  
Q8H C3  C5  C  0 1 Y N N N N N 10.941 1.749  15.321 -3.419 -1.631 -0.013 C3  Q8H 7  
Q8H C1  C6  C  0 1 Y N N N N N 9.928  0.351  17.053 -1.606 -3.203 0.011  C1  Q8H 8  
Q8H C   C7  C  0 1 Y N N N N N 10.643 -0.748 16.554 -0.697 -2.165 0.012  C   Q8H 9  
Q8H N   N2  N  0 1 N N N N N N 11.874 -2.984 15.110 1.142  0.016  0.008  N   Q8H 10 
Q8H C7  C8  C  0 1 N N N N N N 12.801 -4.068 14.731 2.102  1.123  0.014  C7  Q8H 11 
Q8H C12 C9  C  0 1 Y N N N N N 12.027 -4.006 10.989 5.444  -0.193 1.171  C12 Q8H 12 
Q8H C11 C10 C  0 1 Y N N N N N 11.988 -5.389 10.728 6.035  -0.421 -0.057 C11 Q8H 13 
Q8H C10 C11 C  0 1 Y N N N N N 12.472 -5.902 13.006 4.160  0.319  -1.172 C10 Q8H 14 
Q8H C9  C12 C  0 1 Y N N N N N 12.282 -3.587 12.304 4.153  0.313  1.216  C9  Q8H 15 
Q8H C8  C13 C  0 1 Y N N N N N 12.523 -4.534 13.318 3.504  0.572  0.018  C8  Q8H 16 
Q8H SE  SE1 SE 0 0 N N N N N N 12.800 0.835  13.422 -3.168 1.266  -0.021 SE  Q8H 17 
Q8H H1  H1  H  0 1 N N N N N N 9.449  2.407  16.738 -3.671 -3.754 -0.005 H1  Q8H 18 
Q8H H2  H2  H  0 1 N N N N N N 11.011 2.737  14.890 -4.480 -1.431 -0.025 H2  Q8H 19 
Q8H H3  H3  H  0 1 N N N N N N 9.296  0.249  17.923 -1.257 -4.225 0.023  H3  Q8H 20 
Q8H H4  H4  H  0 1 N N N N N N 10.503 -1.721 17.001 0.363  -2.374 0.015  H4  Q8H 21 
Q8H H5  H5  H  0 1 N N N N N N 10.948 -3.172 15.436 1.459  -0.900 0.007  H5  Q8H 22 
Q8H H6  H6  H  0 1 N N N N N N 12.672 -4.913 15.423 1.955  1.737  -0.875 H6  Q8H 23 
Q8H H7  H7  H  0 1 N N N N N N 13.835 -3.698 14.793 1.948  1.732  0.905  H7  Q8H 24 
Q8H H8  H8  H  0 1 N N N N N N 11.865 -3.287 10.199 5.979  -0.407 2.084  H8  Q8H 25 
Q8H H9  H9  H  0 1 N N N N N N 11.784 -5.742 9.728  7.040  -0.816 -0.100 H9  Q8H 26 
Q8H H10 H10 H  0 1 N N N N N N 12.642 -6.646 13.770 3.662  0.519  -2.109 H10 Q8H 27 
Q8H H11 H11 H  0 1 N N N N N N 12.293 -2.533 12.539 3.665  0.501  2.161  H11 Q8H 28 
Q8H H12 H12 H  0 1 N N N N N N 13.437 -0.457 13.185 -3.282 1.552  1.509  H12 Q8H 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Q8H C11 C12 DOUB Y N 1  
Q8H C11 N1  SING Y N 2  
Q8H C12 C9  SING Y N 3  
Q8H N1  C10 DOUB Y N 4  
Q8H C9  C8  DOUB Y N 5  
Q8H C10 C8  SING Y N 6  
Q8H C8  C7  SING N N 7  
Q8H SE  C4  SING N N 8  
Q8H O   C6  DOUB N N 9  
Q8H C7  N   SING N N 10 
Q8H C4  C3  DOUB Y N 11 
Q8H C4  C5  SING Y N 12 
Q8H C6  N   SING N N 13 
Q8H C6  C5  SING N N 14 
Q8H C3  C2  SING Y N 15 
Q8H C5  C   DOUB Y N 16 
Q8H C2  C1  DOUB Y N 17 
Q8H C   C1  SING Y N 18 
Q8H C2  H1  SING N N 19 
Q8H C3  H2  SING N N 20 
Q8H C1  H3  SING N N 21 
Q8H C   H4  SING N N 22 
Q8H N   H5  SING N N 23 
Q8H C7  H6  SING N N 24 
Q8H C7  H7  SING N N 25 
Q8H C12 H8  SING N N 26 
Q8H C11 H9  SING N N 27 
Q8H C10 H10 SING N N 28 
Q8H C9  H11 SING N N 29 
Q8H SE  H12 SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Q8H InChI            InChI                1.03  "InChI=1S/C13H12N2OSe/c16-13(11-5-1-2-6-12(11)17)15-9-10-4-3-7-14-8-10/h1-8,17H,9H2,(H,15,16)" 
Q8H InChIKey         InChI                1.03  JMKKHOHSFFBFIN-UHFFFAOYSA-N                                                                    
Q8H SMILES_CANONICAL CACTVS               3.385 "[SeH]c1ccccc1C(=O)NCc2cccnc2"                                                                 
Q8H SMILES           CACTVS               3.385 "[SeH]c1ccccc1C(=O)NCc2cccnc2"                                                                 
Q8H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=O)NCc2cccnc2)[SeH]"                                                             
Q8H SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=O)NCc2cccnc2)[SeH]"                                                             
# 
_pdbx_chem_comp_identifier.comp_id           Q8H 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-(pyridin-3-ylmethyl)-2-selanyl-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Q8H "Create component" 2020-05-26 PDBE 
Q8H "Initial release"  2020-09-16 RCSB 
Q8H "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Q8H 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               SE 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
