data_KYH
#

_chem_comp.id                                   KYH
_chem_comp.name                                 "1-[4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-azanylpropyl)amino]butyl]guanidine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H32 N10 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-07-04
_chem_comp.pdbx_modified_date                   2020-02-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       436.512
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KYH
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6S7B
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KYH  C13  C1   C  0  1  Y  N  N  -52.370  23.063  -12.802   4.711  -0.699  -1.551  C13  KYH   1  
KYH  C17  C2   C  0  1  N  N  R  -50.558  28.189  -14.202   0.116   0.435   1.815  C17  KYH   2  
KYH  C15  C3   C  0  1  Y  N  N  -51.263  24.336  -14.240   2.896   0.449  -1.251  C15  KYH   3  
KYH  C11  C4   C  0  1  Y  N  N  -53.107  22.080  -12.037   5.910  -1.301  -1.968  C11  KYH   4  
KYH  C22  C5   C  0  1  N  N  N  -53.027  32.178  -14.314  -1.648   4.719  -1.353  C22  KYH   5  
KYH  C20  C6   C  0  1  N  N  N  -52.195  29.975  -15.407  -2.238   2.736   0.049  C20  KYH   6  
KYH  C21  C7   C  0  1  N  N  N  -51.843  31.440  -15.013  -1.157   3.367  -0.831  C21  KYH   7  
KYH  C24  C8   C  0  1  N  N  N  -51.555  29.103  -17.586  -2.847   0.659   1.133  C24  KYH   8  
KYH  C25  C9   C  0  1  N  N  N  -51.133  30.156  -18.664  -3.762   0.225  -0.014  C25  KYH   9  
KYH  C27  C10  C  0  1  N  N  N  -51.342  30.382  -21.216  -5.827  -1.051  -0.605  C27  KYH  10  
KYH  N28  N1   N  0  1  N  N  N  -50.214  31.209  -21.756  -6.928  -1.858  -0.073  N28  KYH  11  
KYH  C02  C11  C  0  1  N  N  S  -49.179  27.729  -13.618   1.208   0.680   2.874  C02  KYH  12  
KYH  C03  C12  C  0  1  N  N  R  -49.329  26.515  -13.354   2.533   0.396   2.125  C03  KYH  13  
KYH  C05  C13  C  0  1  N  N  R  -50.919  26.385  -12.914   2.054  -0.480   0.939  C05  KYH  14  
KYH  C07  C14  C  0  1  Y  N  N  -52.100  24.266  -12.208   4.136  -1.132  -0.344  C07  KYH  15  
KYH  C09  C15  C  0  1  Y  N  N  -53.206  23.582  -10.247   5.865  -2.624  -0.076  C09  KYH  16  
KYH  C18  C16  C  0  1  N  N  N  -50.625  28.114  -15.627  -0.719   1.704   1.626  C18  KYH  17  
KYH  C26  C17  C  0  1  N  N  N  -50.961  29.453  -20.026  -4.912  -0.618   0.542  C26  KYH  18  
KYH  C29  C18  C  0  1  N  N  N  -49.213  30.692  -22.532  -7.883  -2.363  -0.923  C29  KYH  19  
KYH  N06  N2   N  0  1  Y  N  N  -51.400  25.038  -13.122   2.994  -0.390  -0.181  N06  KYH  20  
KYH  N08  N3   N  0  1  Y  N  N  -52.516  24.520  -10.913   4.742  -2.088   0.354  N08  KYH  21  
KYH  N10  N4   N  0  1  Y  N  N  -53.495  22.387  -10.798   6.443  -2.249  -1.204  N10  KYH  22  
KYH  N12  N5   N  0  1  N  N  N  -53.454  20.748  -12.592   6.523  -0.917  -3.148  N12  KYH  23  
KYH  N14  N6   N  0  1  Y  N  N  -51.861  23.109  -14.070   3.902   0.263  -2.055  N14  KYH  24  
KYH  N19  N7   N  0  1  N  N  N  -51.074  29.426  -16.225  -1.743   1.468   0.600  N19  KYH  25  
KYH  N23  N8   N  0  1  N  N  N  -53.227  33.561  -14.846  -0.610   5.324  -2.197  N23  KYH  26  
KYH  N30  N9   N  0  1  N  N  N  -49.149  29.396  -22.839  -7.806  -2.110  -2.272  N30  KYH  27  
KYH  N31  N10  N  0  1  N  N  N  -48.270  31.479  -22.988  -8.863  -3.081  -0.449  N31  KYH  28  
KYH  O01  O1   O  0  1  N  N  N  -48.888  28.580  -12.389   1.052  -0.222   3.972  O01  KYH  29  
KYH  O04  O2   O  0  1  N  N  N  -48.493  25.970  -12.240   3.444  -0.326   2.956  O04  KYH  30  
KYH  O16  O3   O  0  1  N  N  N  -51.567  27.222  -13.644   0.780   0.100   0.585  O16  KYH  31  
KYH  H1   H1   H  0  1  N  N  N  -50.778  29.207  -13.849  -0.525  -0.389   2.127  H1   KYH  32  
KYH  H2   H2   H  0  1  N  N  N  -50.764  24.673  -15.136   2.098   1.159  -1.411  H2   KYH  33  
KYH  H3   H3   H  0  1  N  N  N  -53.949  31.600  -14.476  -2.555   4.573  -1.940  H3   KYH  34  
KYH  H4   H4   H  0  1  N  N  N  -52.818  32.241  -13.236  -1.862   5.377  -0.511  H4   KYH  35  
KYH  H5   H5   H  0  1  N  N  N  -53.125  29.961  -15.994  -2.484   3.415   0.865  H5   KYH  36  
KYH  H6   H6   H  0  1  N  N  N  -52.325  29.367  -14.500  -3.130   2.549  -0.549  H6   KYH  37  
KYH  H7   H7   H  0  1  N  N  N  -50.984  31.423  -14.326  -0.943   2.708  -1.672  H7   KYH  38  
KYH  H8   H8   H  0  1  N  N  N  -51.572  31.994  -15.924  -0.250   3.513  -0.243  H8   KYH  39  
KYH  H9   H9   H  0  1  N  N  N  -52.653  29.049  -17.563  -3.417   1.250   1.850  H9   KYH  40  
KYH  H10  H10  H  0  1  N  N  N  -51.146  28.124  -17.877  -2.444  -0.224   1.630  H10  KYH  41  
KYH  H11  H11  H  0  1  N  N  N  -50.182  30.622  -18.369  -4.165   1.107  -0.510  H11  KYH  42  
KYH  H12  H12  H  0  1  N  N  N  -51.911  30.930  -18.746  -3.191  -0.366  -0.730  H12  KYH  43  
KYH  H13  H13  H  0  1  N  N  N  -52.135  31.065  -20.876  -5.256  -1.643  -1.321  H13  KYH  44  
KYH  H14  H14  H  0  1  N  N  N  -51.725  29.752  -22.032  -6.230  -0.169  -1.102  H14  KYH  45  
KYH  H15  H15  H  0  1  N  N  N  -50.192  32.185  -21.539  -6.983  -2.036   0.879  H15  KYH  46  
KYH  H16  H16  H  0  1  N  N  N  -48.402  27.916  -14.374   1.180   1.713   3.220  H16  KYH  47  
KYH  H17  H17  H  0  1  N  N  N  -49.193  25.875  -14.238   2.984   1.321   1.767  H17  KYH  48  
KYH  H18  H18  H  0  1  N  N  N  -50.978  26.636  -11.845   1.930  -1.517   1.253  H18  KYH  49  
KYH  H19  H19  H  0  1  N  N  N  -53.539  23.791   -9.241   6.331  -3.398   0.515  H19  KYH  50  
KYH  H20  H20  H  0  1  N  N  N  -51.340  27.327  -15.911  -1.202   1.964   2.568  H20  KYH  51  
KYH  H21  H21  H  0  1  N  N  N  -49.629  27.864  -16.020  -0.071   2.522   1.312  H21  KYH  52  
KYH  H22  H22  H  0  1  N  N  N  -51.607  28.563  -20.050  -4.509  -1.500   1.039  H22  KYH  53  
KYH  H23  H23  H  0  1  N  N  N  -49.910  29.147  -20.137  -5.482  -0.026   1.258  H23  KYH  54  
KYH  H24  H24  H  0  1  N  N  N  -53.968  20.226  -11.911   6.124  -0.224  -3.697  H24  KYH  55  
KYH  H25  H25  H  0  1  N  N  N  -54.012  20.864  -13.414   7.350  -1.340  -3.425  H25  KYH  56  
KYH  H27  H27  H  0  1  N  N  N  -53.993  33.994  -14.371  -0.911   6.219  -2.555  H27  KYH  57  
KYH  H28  H28  H  0  1  N  N  N  -52.397  34.098  -14.698   0.260   5.410  -1.694  H28  KYH  58  
KYH  H30  H30  H  0  1  N  N  N  -49.848  28.767  -22.499  -7.077  -1.576  -2.624  H30  KYH  59  
KYH  H31  H31  H  0  1  N  N  N  -48.402  29.053  -23.409  -8.480  -2.467  -2.872  H31  KYH  60  
KYH  H32  H32  H  0  1  N  N  N  -48.400  32.427  -22.697  -8.918  -3.259   0.503  H32  KYH  61  
KYH  H33  H33  H  0  1  N  N  N  -48.055  28.321  -12.014   1.713  -0.112   4.668  H33  KYH  62  
KYH  H34  H34  H  0  1  N  N  N  -48.683  25.047  -12.123   3.703   0.147   3.759  H34  KYH  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KYH  N31  C29  DOUB  N  N   1  
KYH  N30  C29  SING  N  N   2  
KYH  C29  N28  SING  N  N   3  
KYH  N28  C27  SING  N  N   4  
KYH  C27  C26  SING  N  N   5  
KYH  C26  C25  SING  N  N   6  
KYH  C25  C24  SING  N  N   7  
KYH  C24  N19  SING  N  N   8  
KYH  N19  C18  SING  N  N   9  
KYH  N19  C20  SING  N  N  10  
KYH  C18  C17  SING  N  N  11  
KYH  C20  C21  SING  N  N  12  
KYH  C21  C22  SING  N  N  13  
KYH  N23  C22  SING  N  N  14  
KYH  C15  N14  DOUB  Y  N  15  
KYH  C15  N06  SING  Y  N  16  
KYH  C17  O16  SING  N  N  17  
KYH  C17  C02  SING  N  N  18  
KYH  N14  C13  SING  Y  N  19  
KYH  O16  C05  SING  N  N  20  
KYH  C02  C03  SING  N  N  21  
KYH  C02  O01  SING  N  N  22  
KYH  C03  C05  SING  N  N  23  
KYH  C03  O04  SING  N  N  24  
KYH  N06  C05  SING  N  N  25  
KYH  N06  C07  SING  Y  N  26  
KYH  C13  C07  DOUB  Y  N  27  
KYH  C13  C11  SING  Y  N  28  
KYH  N12  C11  SING  N  N  29  
KYH  C07  N08  SING  Y  N  30  
KYH  C11  N10  DOUB  Y  N  31  
KYH  N08  C09  DOUB  Y  N  32  
KYH  N10  C09  SING  Y  N  33  
KYH  C17  H1   SING  N  N  34  
KYH  C15  H2   SING  N  N  35  
KYH  C22  H3   SING  N  N  36  
KYH  C22  H4   SING  N  N  37  
KYH  C20  H5   SING  N  N  38  
KYH  C20  H6   SING  N  N  39  
KYH  C21  H7   SING  N  N  40  
KYH  C21  H8   SING  N  N  41  
KYH  C24  H9   SING  N  N  42  
KYH  C24  H10  SING  N  N  43  
KYH  C25  H11  SING  N  N  44  
KYH  C25  H12  SING  N  N  45  
KYH  C27  H13  SING  N  N  46  
KYH  C27  H14  SING  N  N  47  
KYH  N28  H15  SING  N  N  48  
KYH  C02  H16  SING  N  N  49  
KYH  C03  H17  SING  N  N  50  
KYH  C05  H18  SING  N  N  51  
KYH  C09  H19  SING  N  N  52  
KYH  C18  H20  SING  N  N  53  
KYH  C18  H21  SING  N  N  54  
KYH  C26  H22  SING  N  N  55  
KYH  C26  H23  SING  N  N  56  
KYH  N12  H24  SING  N  N  57  
KYH  N12  H25  SING  N  N  58  
KYH  N23  H27  SING  N  N  59  
KYH  N23  H28  SING  N  N  60  
KYH  N30  H30  SING  N  N  61  
KYH  N30  H31  SING  N  N  62  
KYH  N31  H32  SING  N  N  63  
KYH  O01  H33  SING  N  N  64  
KYH  O04  H34  SING  N  N  65  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KYH  InChI             InChI                 1.03   "InChI=1S/C18H32N10O3/c19-4-3-7-27(6-2-1-5-23-18(21)22)8-11-13(29)14(30)17(31-11)28-10-26-12-15(20)24-9-25-16(12)28/h9-11,13-14,17,29-30H,1-8,19H2,(H2,20,24,25)(H4,21,22,23)/t11-,13-,14-,17-/m1/s1"  
KYH  InChIKey          InChI                 1.03   BKVNLNYAEXQZIR-LSCFUAHRSA-N  
KYH  SMILES_CANONICAL  CACTVS                3.385  "NCCCN(CCCCNC(N)=N)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"  
KYH  SMILES            CACTVS                3.385  "NCCCN(CCCCNC(N)=N)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
KYH  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "[H]/N=C(\N)/NCCCCN(CCCN)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"  
KYH  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCCCNC(=N)N)CCCN)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          KYH
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "1-[4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-azanylpropyl)amino]butyl]guanidine"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KYH  "Create component"  2019-07-04  EBI   
KYH  "Initial release"   2020-03-04  RCSB  
##
