data_K8H
#

_chem_comp.id                                   K8H
_chem_comp.name                                 "(2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,3-d]pyrimidin-7-yl)-5-(1,8-diazaspiro[4.5]decan-1-ylmethyl)oxolane-3,4-diol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H28 N6 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-05-02
_chem_comp.pdbx_modified_date                   2020-05-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       388.464
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    K8H
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RLL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K8H  C1   C1   C  0  1  Y  N  N  -36.157  -32.903   -2.548   5.851  -0.762  -0.668  C1   K8H   1  
K8H  O1   O1   O  0  1  N  N  N  -31.135  -37.319   -2.697  -0.161  -3.604  -0.361  O1   K8H   2  
K8H  C2   C2   C  0  1  Y  N  N  -35.865  -34.897   -3.496   3.749   0.054  -0.207  C2   K8H   3  
K8H  O2   O2   O  0  1  N  N  N  -33.653  -37.773   -1.770   2.166  -2.899   0.567  O2   K8H   4  
K8H  C3   C3   C  0  1  Y  N  N  -37.197  -34.943   -3.895   4.339   1.233   0.285  C3   K8H   5  
K8H  C4   C4   C  0  1  Y  N  N  -37.367  -36.185   -4.592   3.237   2.091   0.717  C4   K8H   6  
K8H  C5   C5   C  0  1  Y  N  N  -36.157  -36.796   -4.635   2.102   1.413   0.481  C5   K8H   7  
K8H  C6   C6   C  0  1  N  N  R  -33.848  -36.304   -3.752   1.404  -0.809  -0.470  C6   K8H   8  
K8H  C7   C7   C  0  1  N  N  R  -31.999  -37.040   -4.958  -0.865  -1.270  -0.492  C7   K8H   9  
K8H  C8   C8   C  0  1  N  N  N  -31.878  -37.884   -6.213  -2.132  -0.750   0.192  C8   K8H  10  
K8H  C9   C9   C  0  1  N  N  N  -29.384  -38.207   -6.327  -2.000   1.452  -0.827  C9   K8H  11  
K8H  C10  C10  C  0  1  N  N  N  -28.484  -39.317   -6.871  -3.044   2.588  -0.962  C10  K8H  12  
K8H  C11  C11  C  0  1  N  N  N  -29.392  -40.534   -6.956  -4.157   2.109   0.007  C11  K8H  13  
K8H  C12  C12  C  0  1  N  N  N  -30.782  -39.913   -7.206  -4.128   0.578  -0.164  C12  K8H  14  
K8H  C13  C13  C  0  1  N  N  N  -30.918  -39.483   -8.677  -4.357  -0.094   1.190  C13  K8H  15  
K8H  C14  C14  C  0  1  N  N  N  -31.073  -40.673   -9.630  -5.757   0.260   1.699  C14  K8H  16  
K8H  C15  C15  C  0  1  N  N  N  -31.927  -42.062   -7.878  -6.589   0.497  -0.565  C15  K8H  17  
K8H  N    N1   N  0  1  N  N  N  -39.308  -33.751   -3.899   6.364   2.486   0.733  N    K8H  18  
K8H  C    C16  C  0  1  Y  N  N  -38.009  -33.842   -3.547   5.737   1.347   0.261  C    K8H  19  
K8H  N1   N2   N  0  1  Y  N  N  -37.456  -32.800   -2.887   6.445   0.330  -0.221  N1   K8H  20  
K8H  N2   N3   N  0  1  Y  N  N  -35.297  -33.897   -2.800   4.544  -0.910  -0.670  N2   K8H  21  
K8H  N3   N4   N  0  1  Y  N  N  -35.237  -36.030   -3.937   2.395   0.196  -0.079  N3   K8H  22  
K8H  O    O3   O  0  1  N  N  N  -33.225  -36.268   -5.018   0.098  -0.210  -0.615  O    K8H  23  
K8H  N4   N5   N  0  1  N  N  N  -30.727  -38.786   -6.232  -2.801   0.216  -0.689  N4   K8H  24  
K8H  N5   N6   N  0  1  N  N  N  -32.160  -41.599   -9.246  -6.760  -0.185   0.724  N5   K8H  25  
K8H  C16  C17  C  0  1  N  N  N  -31.891  -40.917   -6.878  -5.216   0.151  -1.148  C16  K8H  26  
K8H  C17  C18  C  0  1  N  N  S  -32.063  -37.846   -3.637  -0.223  -2.376   0.368  C17  K8H  27  
K8H  C18  C19  C  0  1  N  N  R  -33.519  -37.681   -3.175   1.203  -1.848   0.662  C18  K8H  28  
K8H  H1   H1   H  0  1  N  N  N  -35.753  -32.067   -1.996   6.463  -1.565  -1.051  H1   K8H  29  
K8H  H2   H2   H  0  1  N  N  N  -31.182  -37.819   -1.891   0.235  -4.335   0.133  H2   K8H  30  
K8H  H3   H3   H  0  1  N  N  N  -33.433  -38.653   -1.487   2.081  -3.574   1.254  H3   K8H  31  
K8H  H4   H4   H  0  1  N  N  N  -38.289  -36.564   -5.007   3.320   3.078   1.146  H4   K8H  32  
K8H  H5   H5   H  0  1  N  N  N  -35.944  -37.730   -5.134   1.107   1.776   0.692  H5   K8H  33  
K8H  H6   H6   H  0  1  N  N  N  -33.405  -35.540   -3.096   1.704  -1.302  -1.395  H6   K8H  34  
K8H  H7   H7   H  0  1  N  N  N  -31.136  -36.359   -4.906  -1.112  -1.664  -1.478  H7   K8H  35  
K8H  H8   H8   H  0  1  N  N  N  -31.797  -37.206   -7.076  -2.804  -1.584   0.394  H8   K8H  36  
K8H  H9   H9   H  0  1  N  N  N  -32.791  -38.491   -6.308  -1.865  -0.263   1.129  H9   K8H  37  
K8H  H10  H10  H  0  1  N  N  N  -29.036  -37.884   -5.335  -1.376   1.402  -1.720  H10  K8H  38  
K8H  H11  H11  H  0  1  N  N  N  -29.386  -37.347   -7.012  -1.383   1.605   0.058  H11  K8H  39  
K8H  H12  H12  H  0  1  N  N  N  -27.643  -39.506   -6.188  -2.628   3.542  -0.637  H12  K8H  40  
K8H  H13  H13  H  0  1  N  N  N  -28.096  -39.051   -7.865  -3.418   2.656  -1.984  H13  K8H  41  
K8H  H14  H14  H  0  1  N  N  N  -29.377  -41.105   -6.016  -3.921   2.387   1.034  H14  K8H  42  
K8H  H15  H15  H  0  1  N  N  N  -29.097  -41.190   -7.788  -5.126   2.514  -0.287  H15  K8H  43  
K8H  H16  H16  H  0  1  N  N  N  -30.018  -38.918   -8.963  -4.273  -1.175   1.079  H16  K8H  44  
K8H  H17  H17  H  0  1  N  N  N  -31.803  -38.837   -8.774  -3.610   0.258   1.902  H17  K8H  45  
K8H  H18  H18  H  0  1  N  N  N  -30.127  -41.234   -9.644  -5.932  -0.237   2.654  H18  K8H  46  
K8H  H19  H19  H  0  1  N  N  N  -31.285  -40.287  -10.638  -5.833   1.339   1.832  H19  K8H  47  
K8H  H20  H20  H  0  1  N  N  N  -32.736  -42.752   -7.596  -7.369   0.172  -1.254  H20  K8H  48  
K8H  H21  H21  H  0  1  N  N  N  -30.964  -42.592   -7.843  -6.660   1.575  -0.418  H21  K8H  49  
K8H  H22  H22  H  0  1  N  N  N  -39.675  -32.872   -3.596   5.836   3.220   1.085  H22  K8H  50  
K8H  H23  H23  H  0  1  N  N  N  -39.390  -33.821   -4.893   7.332   2.552   0.711  H23  K8H  51  
K8H  H25  H25  H  0  1  N  N  N  -33.039  -41.124   -9.294  -6.733  -1.187   0.609  H25  K8H  52  
K8H  H27  H27  H  0  1  N  N  N  -32.860  -40.397   -6.897  -5.079   0.676  -2.093  H27  K8H  53  
K8H  H28  H28  H  0  1  N  N  N  -31.715  -41.327   -5.873  -5.153  -0.924  -1.316  H28  K8H  54  
K8H  H29  H29  H  0  1  N  N  N  -31.860  -38.907   -3.845  -0.779  -2.510   1.296  H29  K8H  55  
K8H  H30  H30  H  0  1  N  N  N  -34.141  -38.438   -3.675   1.246  -1.370   1.641  H30  K8H  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K8H  C14  N5   SING  N  N   1  
K8H  C14  C13  SING  N  N   2  
K8H  N5   C15  SING  N  N   3  
K8H  C13  C12  SING  N  N   4  
K8H  C15  C16  SING  N  N   5  
K8H  C12  C11  SING  N  N   6  
K8H  C12  C16  SING  N  N   7  
K8H  C12  N4   SING  N  N   8  
K8H  C11  C10  SING  N  N   9  
K8H  C10  C9   SING  N  N  10  
K8H  C9   N4   SING  N  N  11  
K8H  N4   C8   SING  N  N  12  
K8H  C8   C7   SING  N  N  13  
K8H  O    C7   SING  N  N  14  
K8H  O    C6   SING  N  N  15  
K8H  C7   C17  SING  N  N  16  
K8H  C5   C4   DOUB  Y  N  17  
K8H  C5   N3   SING  Y  N  18  
K8H  C4   C3   SING  Y  N  19  
K8H  N3   C6   SING  N  N  20  
K8H  N3   C2   SING  Y  N  21  
K8H  N    C    SING  N  N  22  
K8H  C3   C    DOUB  Y  N  23  
K8H  C3   C2   SING  Y  N  24  
K8H  C6   C18  SING  N  N  25  
K8H  C17  C18  SING  N  N  26  
K8H  C17  O1   SING  N  N  27  
K8H  C    N1   SING  Y  N  28  
K8H  C2   N2   DOUB  Y  N  29  
K8H  C18  O2   SING  N  N  30  
K8H  N1   C1   DOUB  Y  N  31  
K8H  N2   C1   SING  Y  N  32  
K8H  C1   H1   SING  N  N  33  
K8H  O1   H2   SING  N  N  34  
K8H  O2   H3   SING  N  N  35  
K8H  C4   H4   SING  N  N  36  
K8H  C5   H5   SING  N  N  37  
K8H  C6   H6   SING  N  N  38  
K8H  C7   H7   SING  N  N  39  
K8H  C8   H8   SING  N  N  40  
K8H  C8   H9   SING  N  N  41  
K8H  C9   H10  SING  N  N  42  
K8H  C9   H11  SING  N  N  43  
K8H  C10  H12  SING  N  N  44  
K8H  C10  H13  SING  N  N  45  
K8H  C11  H14  SING  N  N  46  
K8H  C11  H15  SING  N  N  47  
K8H  C13  H16  SING  N  N  48  
K8H  C13  H17  SING  N  N  49  
K8H  C14  H18  SING  N  N  50  
K8H  C14  H19  SING  N  N  51  
K8H  C15  H20  SING  N  N  52  
K8H  C15  H21  SING  N  N  53  
K8H  N    H22  SING  N  N  54  
K8H  N    H23  SING  N  N  55  
K8H  N5   H25  SING  N  N  56  
K8H  C16  H27  SING  N  N  57  
K8H  C16  H28  SING  N  N  58  
K8H  C17  H29  SING  N  N  59  
K8H  C18  H30  SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K8H  InChI             InChI                 1.03   "InChI=1S/C19H28N6O3/c20-16-12-2-9-25(17(12)23-11-22-16)18-15(27)14(26)13(28-18)10-24-8-1-3-19(24)4-6-21-7-5-19/h2,9,11,13-15,18,21,26-27H,1,3-8,10H2,(H2,20,22,23)/t13-,14-,15-,18-/m1/s1"  
K8H  InChIKey          InChI                 1.03   RERIOYBALRXMSF-ATNYBXOESA-N  
K8H  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(ccc12)[C@@H]3O[C@H](CN4CCCC45CCNCC5)[C@@H](O)[C@H]3O"  
K8H  SMILES            CACTVS                3.385  "Nc1ncnc2n(ccc12)[CH]3O[CH](CN4CCCC45CCNCC5)[CH](O)[CH]3O"  
K8H  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cn(c2c1c(ncn2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CN4CCCC45CCNCC5)O)O"  
K8H  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cn(c2c1c(ncn2)N)C3C(C(C(O3)CN4CCCC45CCNCC5)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          K8H
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,3-d]pyrimidin-7-yl)-5-(1,8-diazaspiro[4.5]decan-1-ylmethyl)oxolane-3,4-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K8H  "Create component"  2019-05-02  PDBE  
K8H  "Initial release"   2020-06-03  RCSB  
##
