data_K3H
#

_chem_comp.id                                   K3H
_chem_comp.name                                 "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl-methyl-amino]methyl]oxolane-3,4-diol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H29 N11 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-16
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       583.557
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    K3H
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RGC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K3H  C4     C1   C  0  1  Y  N  N  18.006   6.152   8.284   6.237  -0.906   0.610  C4     K3H   1  
K3H  C5     C2   C  0  1  Y  N  N  17.695   5.067   7.668   6.613  -2.213   0.256  C5     K3H   2  
K3H  C6     C3   C  0  1  Y  N  N  18.601   4.121   7.475   7.802  -2.730   0.796  C6     K3H   3  
K3H  C8     C4   C  0  1  Y  N  N  16.009   6.317   7.768   4.748  -1.778  -0.763  C8     K3H   4  
K3H  N1     N1   N  0  1  Y  N  N  19.773   4.230   7.885   8.514  -1.960   1.613  N1     K3H   5  
K3H  N3     N2   N  0  1  Y  N  N  19.195   6.283   8.692   7.015  -0.210   1.432  N3     K3H   6  
K3H  "C1'"  C5   C  0  1  N  N  R  19.587   9.261  13.939  -4.550   0.949   0.880  "C1'"  K3H   7  
K3H  C2     C6   C  0  1  Y  N  N  20.065   5.335   8.518   8.120  -0.737   1.917  C2     K3H   8  
K3H  "C2'"  C7   C  0  1  N  N  R  18.653   9.058  15.065  -3.353   0.635   1.814  "C2'"  K3H   9  
K3H  "C3'"  C8   C  0  1  N  N  S  18.763   7.571  15.141  -2.712   2.032   2.000  "C3'"  K3H  10  
K3H  "C4'"  C9   C  0  1  N  N  R  18.964   7.204  13.718  -3.225   2.846   0.797  "C4'"  K3H  11  
K3H  "C5'"  C10  C  0  1  N  N  N  17.756   6.398  13.345  -2.042   3.364  -0.024  "C5'"  K3H  12  
K3H  CAA    C11  C  0  1  N  N  N  13.034   9.087  12.165   0.581  -0.689  -1.136  CAA    K3H  13  
K3H  CAI    C12  C  0  1  N  N  N  16.277  10.858  12.777  -2.072   0.150  -1.972  CAI    K3H  14  
K3H  CAJ    C13  C  0  1  N  N  N  17.362  11.044  12.726  -3.065  -0.272  -1.508  CAJ    K3H  15  
K3H  CAL    C14  C  0  1  Y  N  N  22.932  11.419  12.842  -7.995  -1.908   1.202  CAL    K3H  16  
K3H  CAO    C15  C  0  1  N  N  N  14.788  10.584  12.848  -0.827   0.679  -2.553  CAO    K3H  17  
K3H  CAP    C16  C  0  1  N  N  N  14.382   9.868  10.536   1.411   1.417  -1.997  CAP    K3H  18  
K3H  CAZ    C17  C  0  1  Y  N  N  21.506  12.851  11.890  -7.050  -3.001  -0.598  CAZ    K3H  19  
K3H  CBA    C18  C  0  1  Y  N  N  18.648  11.235  12.698  -4.275  -0.787  -0.943  CBA    K3H  20  
K3H  CBC    C19  C  0  1  Y  N  N  20.486  12.124  12.276  -6.016  -2.046  -0.608  CBC    K3H  21  
K3H  CBE    C20  C  0  1  Y  N  N  20.680  11.025  12.945  -6.048  -1.025   0.358  CBE    K3H  22  
K3H  CBG    C21  C  0  1  N  N  S  15.627   9.982   8.461   3.567   2.490  -1.278  CBG    K3H  23  
K3H  CBH    C22  C  0  1  N  N  R  16.861   9.319   7.987   4.811   1.603  -1.030  CBH    K3H  24  
K3H  CBK    C23  C  0  1  N  N  R  15.699   9.605   9.863   2.382   1.613  -0.831  CBK    K3H  25  
K3H  CBL    C24  C  0  1  N  N  R  16.965   8.214   8.968   4.278   0.579   0.004  CBL    K3H  26  
K3H  N6     N3   N  0  1  N  N  N  18.299   3.047   6.865   8.223  -4.011   0.484  N6     K3H  27  
K3H  N7     N4   N  0  1  Y  N  N  16.448   5.181   7.353   5.661  -2.688  -0.583  N7     K3H  28  
K3H  N9     N5   N  0  1  Y  N  N  16.988   6.935   8.355   5.058  -0.660  -0.048  N9     K3H  29  
K3H  NAC    N6   N  0  1  N  N  N  21.265  13.918  11.229  -7.070  -4.033  -1.519  NAC    K3H  30  
K3H  NAR    N7   N  0  1  Y  N  N  22.716  12.507  12.134  -8.006  -2.889   0.318  NAR    K3H  31  
K3H  NAT    N8   N  0  1  Y  N  N  21.896  10.653  13.232  -7.050  -0.992   1.230  NAT    K3H  32  
K3H  NAV    N9   N  0  1  Y  N  N  19.212  12.246  12.133  -4.916  -1.852  -1.367  NAV    K3H  33  
K3H  NBN    N10  N  0  1  N  N  N  14.377   9.529  11.929   0.228   0.681  -1.531  NBN    K3H  34  
K3H  NBP    N11  N  0  1  Y  N  N  19.545  10.486  13.239  -4.943  -0.244   0.126  NBP    K3H  35  
K3H  "O2'"  O1   O  0  1  N  N  N  19.145   9.622  16.202  -3.805   0.111   3.064  "O2'"  K3H  36  
K3H  "O3'"  O2   O  0  1  N  N  N  19.911   7.171  15.683  -3.147   2.623   3.226  "O3'"  K3H  37  
K3H  "O4'"  O3   O  0  1  N  N  N  19.064   8.393  13.070  -4.030   1.965  -0.004  "O4'"  K3H  38  
K3H  "O5'"  O4   O  0  1  N  N  N  16.874   7.197  12.666  -2.521   4.213  -1.068  "O5'"  K3H  39  
K3H  OAF    O5   O  0  1  N  N  N  15.693  11.294   8.317   3.633   3.681  -0.491  OAF    K3H  40  
K3H  OAG    O6   O  0  1  N  N  N  17.887  10.159   8.167   5.884   2.372  -0.480  OAG    K3H  41  
K3H  OAX    O7   O  0  1  N  N  N  15.846   8.314   9.707   2.920   0.344  -0.424  OAX    K3H  42  
K3H  H1     H1   H  0  1  N  N  N  15.003   6.691   7.649   3.874  -1.893  -1.387  H1     K3H  43  
K3H  H2     H2   H  0  1  N  N  N  20.613   9.001  14.237  -5.393   1.334   1.454  H2     K3H  44  
K3H  H3     H3   H  0  1  N  N  N  21.063   5.464   8.910   8.728  -0.146   2.586  H3     K3H  45  
K3H  H4     H4   H  0  1  N  N  N  17.631   9.378  14.814  -2.656  -0.052   1.334  H4     K3H  46  
K3H  H5     H5   H  0  1  N  N  N  17.861   7.109  15.568  -1.625   1.958   1.978  H5     K3H  47  
K3H  H6     H6   H  0  1  N  N  N  19.872   6.593  13.608  -3.828   3.684   1.146  H6     K3H  48  
K3H  H7     H7   H  0  1  N  N  N  17.276   6.011  14.256  -1.370   3.928   0.623  H7     K3H  49  
K3H  H8     H8   H  0  1  N  N  N  18.059   5.556  12.704  -1.504   2.521  -0.458  H8     K3H  50  
K3H  H9     H9   H  0  1  N  N  N  12.922   8.799  13.221   1.314  -0.657  -0.329  H9     K3H  51  
K3H  H10    H10  H  0  1  N  N  N  12.333   9.902  11.931  -0.312  -1.211  -0.795  H10    K3H  52  
K3H  H11    H11  H  0  1  N  N  N  12.815   8.220  11.524   1.005  -1.215  -1.991  H11    K3H  53  
K3H  H12    H12  H  0  1  N  N  N  23.940  11.141  13.110  -8.795  -1.852   1.925  H12    K3H  54  
K3H  H13    H13  H  0  1  N  N  N  14.246  11.507  12.593  -0.521   0.052  -3.390  H13    K3H  55  
K3H  H14    H14  H  0  1  N  N  N  14.532  10.280  13.874  -0.995   1.697  -2.904  H14    K3H  56  
K3H  H15    H15  H  0  1  N  N  N  14.147  10.938  10.437   1.105   2.389  -2.383  H15    K3H  57  
K3H  H16    H16  H  0  1  N  N  N  13.607   9.274  10.030   1.902   0.850  -2.788  H16    K3H  58  
K3H  H17    H17  H  0  1  N  N  N  14.742   9.539   7.980   3.481   2.738  -2.336  H17    K3H  59  
K3H  H18    H18  H  0  1  N  N  N  16.756   8.945   6.958   5.123   1.104  -1.947  H18    K3H  60  
K3H  H19    H19  H  0  1  N  N  N  16.527  10.105  10.387   1.866   2.085   0.005  H19    K3H  61  
K3H  H20    H20  H  0  1  N  N  N  17.866   8.357   9.583   4.296   1.003   1.008  H20    K3H  62  
K3H  H21    H21  H  0  1  N  N  N  19.101   2.451   6.822   7.695  -4.563  -0.114  H21    K3H  63  
K3H  H22    H22  H  0  1  N  N  N  17.563   2.581   7.356   9.046  -4.357   0.863  H22    K3H  64  
K3H  H23    H23  H  0  1  N  N  N  22.128  14.359  10.982  -7.788  -4.686  -1.502  H23    K3H  65  
K3H  H24    H24  H  0  1  N  N  N  20.758  13.688  10.398  -6.366  -4.105  -2.183  H24    K3H  66  
K3H  H26    H26  H  0  1  N  N  N  18.533   9.483  16.915  -3.092  -0.101   3.682  H26    K3H  67  
K3H  H27    H27  H  0  1  N  N  N  19.903   7.357  16.615  -2.776   3.500   3.394  H27    K3H  68  
K3H  H28    H28  H  0  1  N  N  N  16.106   6.691  12.427  -1.824   4.578  -1.630  H28    K3H  69  
K3H  H29    H29  H  0  1  N  N  N  14.887  11.688   8.630   4.361   4.271  -0.730  H29    K3H  70  
K3H  H30    H30  H  0  1  N  N  N  18.689   9.748   7.867   6.192   3.085  -1.056  H30    K3H  71  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K3H  N6     C6     SING  N  N   1  
K3H  N7     C5     SING  Y  N   2  
K3H  N7     C8     DOUB  Y  N   3  
K3H  C6     C5     DOUB  Y  N   4  
K3H  C6     N1     SING  Y  N   5  
K3H  C5     C4     SING  Y  N   6  
K3H  C8     N9     SING  Y  N   7  
K3H  N1     C2     DOUB  Y  N   8  
K3H  CBH    OAG    SING  N  N   9  
K3H  CBH    CBG    SING  N  N  10  
K3H  CBH    CBL    SING  N  N  11  
K3H  C4     N9     SING  Y  N  12  
K3H  C4     N3     DOUB  Y  N  13  
K3H  OAF    CBG    SING  N  N  14  
K3H  N9     CBL    SING  N  N  15  
K3H  CBG    CBK    SING  N  N  16  
K3H  C2     N3     SING  Y  N  17  
K3H  CBL    OAX    SING  N  N  18  
K3H  OAX    CBK    SING  N  N  19  
K3H  CBK    CAP    SING  N  N  20  
K3H  CAP    NBN    SING  N  N  21  
K3H  NAC    CAZ    SING  N  N  22  
K3H  CAZ    NAR    DOUB  Y  N  23  
K3H  CAZ    CBC    SING  Y  N  24  
K3H  NBN    CAA    SING  N  N  25  
K3H  NBN    CAO    SING  N  N  26  
K3H  NAV    CBC    SING  Y  N  27  
K3H  NAV    CBA    DOUB  Y  N  28  
K3H  NAR    CAL    SING  Y  N  29  
K3H  CBC    CBE    DOUB  Y  N  30  
K3H  "O5'"  "C5'"  SING  N  N  31  
K3H  CBA    CAJ    SING  N  N  32  
K3H  CBA    NBP    SING  Y  N  33  
K3H  CAJ    CAI    TRIP  N  N  34  
K3H  CAI    CAO    SING  N  N  35  
K3H  CAL    NAT    DOUB  Y  N  36  
K3H  CBE    NAT    SING  Y  N  37  
K3H  CBE    NBP    SING  Y  N  38  
K3H  "O4'"  "C4'"  SING  N  N  39  
K3H  "O4'"  "C1'"  SING  N  N  40  
K3H  NBP    "C1'"  SING  N  N  41  
K3H  "C5'"  "C4'"  SING  N  N  42  
K3H  "C4'"  "C3'"  SING  N  N  43  
K3H  "C1'"  "C2'"  SING  N  N  44  
K3H  "C2'"  "C3'"  SING  N  N  45  
K3H  "C2'"  "O2'"  SING  N  N  46  
K3H  "C3'"  "O3'"  SING  N  N  47  
K3H  C8     H1     SING  N  N  48  
K3H  "C1'"  H2     SING  N  N  49  
K3H  C2     H3     SING  N  N  50  
K3H  "C2'"  H4     SING  N  N  51  
K3H  "C3'"  H5     SING  N  N  52  
K3H  "C4'"  H6     SING  N  N  53  
K3H  "C5'"  H7     SING  N  N  54  
K3H  "C5'"  H8     SING  N  N  55  
K3H  CAA    H9     SING  N  N  56  
K3H  CAA    H10    SING  N  N  57  
K3H  CAA    H11    SING  N  N  58  
K3H  CAL    H12    SING  N  N  59  
K3H  CAO    H13    SING  N  N  60  
K3H  CAO    H14    SING  N  N  61  
K3H  CAP    H15    SING  N  N  62  
K3H  CAP    H16    SING  N  N  63  
K3H  CBG    H17    SING  N  N  64  
K3H  CBH    H18    SING  N  N  65  
K3H  CBK    H19    SING  N  N  66  
K3H  CBL    H20    SING  N  N  67  
K3H  N6     H21    SING  N  N  68  
K3H  N6     H22    SING  N  N  69  
K3H  NAC    H23    SING  N  N  70  
K3H  NAC    H24    SING  N  N  71  
K3H  "O2'"  H26    SING  N  N  72  
K3H  "O3'"  H27    SING  N  N  73  
K3H  "O5'"  H28    SING  N  N  74  
K3H  OAF    H29    SING  N  N  75  
K3H  OAG    H30    SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K3H  InChI             InChI                 1.03   "InChI=1S/C24H29N11O7/c1-33(5-10-15(37)17(39)23(41-10)34-9-31-13-19(25)27-7-29-21(13)34)4-2-3-12-32-14-20(26)28-8-30-22(14)35(12)24-18(40)16(38)11(6-36)42-24/h7-11,15-18,23-24,36-40H,4-6H2,1H3,(H2,25,27,29)(H2,26,28,30)/t10-,11-,15-,16-,17-,18-,23-,24-/m1/s1"  
K3H  InChIKey          InChI                 1.03   OPWBYPZWGGCZGG-KRSQEUQLSA-N  
K3H  SMILES_CANONICAL  CACTVS                3.385  "CN(CC#Cc1nc2c(N)ncnc2n1[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56"  
K3H  SMILES            CACTVS                3.385  "CN(CC#Cc1nc2c(N)ncnc2n1[CH]3O[CH](CO)[CH](O)[CH]3O)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56"  
K3H  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN(CC#Cc1nc2c(ncnc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N)C[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O"  
K3H  SMILES            "OpenEye OEToolkits"  2.0.7  "CN(CC#Cc1nc2c(ncnc2n1C3C(C(C(O3)CO)O)O)N)CC4C(C(C(O4)n5cnc6c5ncnc6N)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          K3H
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl-methyl-amino]methyl]oxolane-3,4-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K3H  "Create component"  2019-04-16  RCSB  
K3H  "Initial release"   2020-02-19  RCSB  
##
