data_I8H
# 
_chem_comp.id                                    I8H 
_chem_comp.name                                  "(1~{R},2~{S},5~{S})-3-[(2~{S})-2-(~{tert}-butylcarbamoylamino)-3,3-dimethyl-butanoyl]-6,6-dimethyl-~{N}-[(2~{S},3~{R})-4-(methylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H48 N6 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        564.717 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I8H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7Z0P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I8H N1  N1  N 0 1 N N N N N N -15.697 1.180  -0.776 -0.396 -0.572 0.493  N1  I8H 1  
I8H N3  N2  N 0 1 N N N N N N -14.046 -1.021 1.386  3.210  0.187  0.246  N3  I8H 2  
I8H C4  C1  C 0 1 N N S N N N -15.791 -0.057 -0.003 0.947  -0.365 1.081  C4  I8H 3  
I8H C5  C2  C 0 1 N N N N N N -15.278 2.283  -0.133 -1.344 0.355  0.249  C5  I8H 4  
I8H C6  C3  C 0 1 N N N N N N -14.419 -0.705 0.142  1.997  -0.349 0.000  C6  I8H 5  
I8H C7  C4  C 0 1 N N S N N N -15.097 3.575  -0.942 -2.626 -0.041 -0.438 C7  I8H 6  
I8H C8  C5  C 0 1 N N N N N N -13.636 3.943  -1.185 -2.435 0.028  -1.954 C8  I8H 7  
I8H C10 C6  C 0 1 N N N N N N -12.923 4.185  0.143  -2.025 1.447  -2.352 C10 I8H 8  
I8H C13 C7  C 0 1 N N N N N N -16.810 5.361  -0.872 -4.982 0.472  -0.089 C13 I8H 9  
I8H C15 C8  C 0 1 N N N N N N -18.589 7.528  -1.602 -7.555 -0.334 1.137  C15 I8H 10 
I8H C17 C9  C 0 1 N N N N N N -19.715 5.970  -0.182 -8.274 2.016  0.689  C17 I8H 11 
I8H C20 C10 C 0 1 N N N N N N -12.154 -0.934 2.931  5.215  1.343  -0.542 C20 I8H 12 
I8H C21 C11 C 0 1 N N S N N N -11.739 0.492  2.605  4.488  2.684  -0.664 C21 I8H 13 
I8H C22 C12 C 0 1 N N N N N N -11.354 1.290  3.832  3.465  2.834  0.440  C22 I8H 14 
I8H C24 C13 C 0 1 N N N N N N -10.526 0.676  1.698  5.470  3.856  -0.433 C24 I8H 15 
I8H C26 C14 C 0 1 N N N N N N -18.096 -0.444 -1.326 -0.039 -2.067 2.836  C26 I8H 16 
I8H C28 C15 C 0 1 N N N N N N -18.972 -1.682 -1.291 0.256  -2.939 4.058  C28 I8H 17 
I8H C1  C16 C 0 1 N N R N N N -16.732 -0.923 -0.832 1.155  -1.576 2.015  C1  I8H 18 
I8H C2  C17 C 0 1 N N S N N N -16.859 -0.287 -2.196 0.226  -2.674 1.457  C2  I8H 19 
I8H C3  C18 C 0 1 N N N N N N -16.088 1.019  -2.184 -0.460 -2.028 0.228  C3  I8H 20 
I8H N2  N3  N 0 1 N N N N N N -15.773 4.700  -0.305 -3.697 0.875  -0.038 N2  I8H 21 
I8H C9  C19 C 0 1 N N S N N N -12.755 -1.643 1.721  4.230  0.203  -0.805 C9  I8H 22 
I8H O1  O1  O 0 1 N N N N N N -13.708 -0.888 -0.842 1.752  -0.817 -1.091 O1  I8H 23 
I8H O2  O2  O 0 1 N N N N N N -15.041 2.227  1.076  -1.165 1.507  0.582  O2  I8H 24 
I8H C11 C20 C 0 1 N N N N N N -12.888 2.830  -1.931 -1.341 -0.956 -2.375 C11 I8H 25 
I8H C12 C21 C 0 1 N N N N N N -13.574 5.224  -2.025 -3.746 -0.339 -2.651 C12 I8H 26 
I8H N4  N4  N 0 1 N N N N N N -17.220 6.481  -0.223 -5.967 1.316  0.278  N4  I8H 27 
I8H C14 C22 C 0 1 N N N N N N -18.599 6.993  -0.172 -7.364 0.878  0.223  C14 I8H 28 
I8H O3  O3  O 0 1 N N N N N N -17.336 4.959  -1.925 -5.253 -0.651 -0.466 O3  I8H 29 
I8H C16 C23 C 0 1 N N N N N N -18.931 8.238  0.618  -7.723 0.495  -1.214 C16 I8H 30 
I8H C18 C24 C 0 1 N N R N N N -12.934 -3.167 1.926  4.982  -1.130 -0.806 C18 I8H 31 
I8H C19 C25 C 0 1 N N N N N N -11.627 -3.933 2.121  4.011  -2.254 -1.065 C19 I8H 32 
I8H N5  N5  N 0 1 N N N N N N -11.326 -4.907 1.281  3.375  -2.335 -2.250 N5  I8H 33 
I8H N6  N6  N 0 1 N N N N N N -10.385 2.147  3.503  3.935  3.651  1.398  N6  I8H 34 
I8H C23 C26 C 0 1 N N N N N N -9.926  2.019  2.126  5.285  4.128  1.076  C23 I8H 35 
I8H O4  O4  O 0 1 N N N N N N -10.880 -3.606 3.036  3.802  -3.085 -0.206 O4  I8H 36 
I8H O5  O5  O 0 1 N N N N N N -13.653 -3.697 0.818  5.608  -1.325 0.464  O5  I8H 37 
I8H O6  O6  O 0 1 N N N N N N -11.874 1.180  4.944  2.378  2.295  0.458  O6  I8H 38 
I8H C25 C27 C 0 1 N N N N N N -10.949 -4.665 -0.098 2.432  -3.428 -2.502 C25 I8H 39 
I8H C27 C28 C 0 1 N N N N N N -18.612 0.640  -0.401 -1.236 -1.124 2.973  C27 I8H 40 
I8H H1  H1  H 0 1 N N N N N N -14.681 -0.823 2.133  3.406  0.562  1.119  H1  I8H 41 
I8H H2  H2  H 0 1 N N N N N N -16.227 0.131  0.989  0.974  0.565  1.650  H2  I8H 42 
I8H H3  H3  H 0 1 N N N N N N -15.561 3.410  -1.926 -2.892 -1.059 -0.151 H3  I8H 43 
I8H H4  H4  H 0 1 N N N N N N -12.962 3.270  0.753  -1.091 1.708  -1.856 H4  I8H 44 
I8H H5  H5  H 0 1 N N N N N N -11.873 4.453  -0.048 -1.889 1.496  -3.433 H5  I8H 45 
I8H H6  H6  H 0 1 N N N N N N -13.419 5.006  0.681  -2.804 2.148  -2.052 H6  I8H 46 
I8H H7  H7  H 0 1 N N N N N N -19.562 7.988  -1.829 -8.595 -0.660 1.096  H7  I8H 47 
I8H H8  H8  H 0 1 N N N N N N -17.794 8.281  -1.706 -6.907 -1.145 0.805  H8  I8H 48 
I8H H9  H9  H 0 1 N N N N N N -18.403 6.700  -2.302 -7.300 -0.061 2.161  H9  I8H 49 
I8H H10 H10 H 0 1 N N N N N N -19.808 5.518  0.816  -8.019 2.289  1.713  H10 I8H 50 
I8H H11 H11 H 0 1 N N N N N N -20.661 6.462  -0.450 -8.138 2.880  0.038  H11 I8H 51 
I8H H12 H12 H 0 1 N N N N N N -19.487 5.186  -0.920 -9.314 1.691  0.649  H12 I8H 52 
I8H H13 H13 H 0 1 N N N N N N -12.902 -0.911 3.737  6.024  1.301  -1.272 H13 I8H 53 
I8H H14 H14 H 0 1 N N N N N N -11.269 -1.494 3.268  5.627  1.244  0.462  H14 I8H 54 
I8H H15 H15 H 0 1 N N N N N N -12.595 0.993  2.129  4.011  2.770  -1.640 H15 I8H 55 
I8H H16 H16 H 0 1 N N N N N N -10.832 0.706  0.642  6.495  3.555  -0.652 H16 I8H 56 
I8H H17 H17 H 0 1 N N N N N N -9.802  -0.138 1.847  5.185  4.726  -1.024 H17 I8H 57 
I8H H18 H18 H 0 1 N N N N N N -19.796 -1.529 -0.579 0.879  -2.383 4.759  H18 I8H 58 
I8H H19 H19 H 0 1 N N N N N N -19.384 -1.868 -2.294 -0.681 -3.213 4.544  H19 I8H 59 
I8H H20 H20 H 0 1 N N N N N N -18.371 -2.548 -0.976 0.780  -3.841 3.743  H20 I8H 60 
I8H H21 H21 H 0 1 N N N N N N -16.569 -2.010 -0.797 2.167  -1.775 2.367  H21 I8H 61 
I8H H22 H22 H 0 1 N N N N N N -16.766 -0.934 -3.081 0.523  -3.719 1.378  H22 I8H 62 
I8H H23 H23 H 0 1 N N N N N N -15.202 0.957  -2.833 -1.497 -2.354 0.157  H23 I8H 63 
I8H H24 H24 H 0 1 N N N N N N -16.725 1.854  -2.512 0.082  -2.279 -0.684 H24 I8H 64 
I8H H25 H25 H 0 1 N N N N N N -15.455 4.998  0.595  -3.481 1.772  0.262  H25 I8H 65 
I8H H26 H26 H 0 1 N N N N N N -12.069 -1.501 0.873  3.752  0.351  -1.773 H26 I8H 66 
I8H H27 H27 H 0 1 N N N N N N -12.924 1.903  -1.340 -1.651 -1.971 -2.129 H27 I8H 67 
I8H H28 H28 H 0 1 N N N N N N -13.364 2.660  -2.908 -1.176 -0.877 -3.450 H28 I8H 68 
I8H H29 H29 H 0 1 N N N N N N -11.840 3.129  -2.080 -0.417 -0.720 -1.848 H29 I8H 69 
I8H H30 H30 H 0 1 N N N N N N -14.107 6.032  -1.502 -4.526 0.361  -2.351 H30 I8H 70 
I8H H31 H31 H 0 1 N N N N N N -12.523 5.514  -2.174 -3.610 -0.290 -3.731 H31 I8H 71 
I8H H32 H32 H 0 1 N N N N N N -14.047 5.045  -3.002 -4.038 -1.350 -2.367 H32 I8H 72 
I8H H33 H33 H 0 1 N N N N N N -16.522 7.005  0.264  -5.752 2.212  0.579  H33 I8H 73 
I8H H34 H34 H 0 1 N N N N N N -18.972 7.993  1.690  -8.762 0.169  -1.255 H34 I8H 74 
I8H H35 H35 H 0 1 N N N N N N -18.156 8.999  0.445  -7.587 1.358  -1.865 H35 I8H 75 
I8H H36 H36 H 0 1 N N N N N N -19.907 8.628  0.294  -7.074 -0.317 -1.546 H36 I8H 76 
I8H H37 H37 H 0 1 N N N N N N -13.536 -3.304 2.837  5.741  -1.118 -1.588 H37 I8H 77 
I8H H38 H38 H 0 1 N N N N N N -11.360 -5.851 1.610  3.542  -1.671 -2.937 H38 I8H 78 
I8H H39 H39 H 0 1 N N N N N N -10.008 2.816  4.143  3.445  3.895  2.199  H39 I8H 79 
I8H H40 H40 H 0 1 N N N N N N -8.827  1.998  2.074  6.028  3.576  1.653  H40 I8H 80 
I8H H41 H41 H 0 1 N N N N N N -10.307 2.841  1.502  5.366  5.196  1.280  H41 I8H 81 
I8H H42 H42 H 0 1 N N N N N N -13.769 -4.633 0.933  4.991  -1.346 1.208  H42 I8H 82 
I8H H43 H43 H 0 1 N N N N N N -10.746 -5.624 -0.597 2.020  -3.328 -3.507 H43 I8H 83 
I8H H44 H44 H 0 1 N N N N N N -11.770 -4.148 -0.617 2.950  -4.382 -2.415 H44 I8H 84 
I8H H45 H45 H 0 1 N N N N N N -10.045 -4.039 -0.126 1.624  -3.385 -1.772 H45 I8H 85 
I8H H46 H46 H 0 1 N N N N N N -19.515 0.283  0.116  -0.916 -0.198 3.450  H46 I8H 86 
I8H H47 H47 H 0 1 N N N N N N -17.839 0.887  0.341  -1.639 -0.903 1.984  H47 I8H 87 
I8H H48 H48 H 0 1 N N N N N N -18.856 1.537  -0.988 -2.006 -1.599 3.581  H48 I8H 88 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I8H C2  C3  SING N N 1  
I8H C2  C26 SING N N 2  
I8H C2  C1  SING N N 3  
I8H C3  N1  SING N N 4  
I8H C12 C8  SING N N 5  
I8H C11 C8  SING N N 6  
I8H O3  C13 DOUB N N 7  
I8H C15 C14 SING N N 8  
I8H C26 C28 SING N N 9  
I8H C26 C1  SING N N 10 
I8H C26 C27 SING N N 11 
I8H C8  C7  SING N N 12 
I8H C8  C10 SING N N 13 
I8H C7  N2  SING N N 14 
I8H C7  C5  SING N N 15 
I8H C13 N2  SING N N 16 
I8H C13 N4  SING N N 17 
I8H O1  C6  DOUB N N 18 
I8H C1  C4  SING N N 19 
I8H N1  C5  SING N N 20 
I8H N1  C4  SING N N 21 
I8H N4  C14 SING N N 22 
I8H C17 C14 SING N N 23 
I8H C14 C16 SING N N 24 
I8H C5  O2  DOUB N N 25 
I8H C25 N5  SING N N 26 
I8H C4  C6  SING N N 27 
I8H C6  N3  SING N N 28 
I8H O5  C18 SING N N 29 
I8H N5  C19 SING N N 30 
I8H N3  C9  SING N N 31 
I8H C24 C23 SING N N 32 
I8H C24 C21 SING N N 33 
I8H C9  C18 SING N N 34 
I8H C9  C20 SING N N 35 
I8H C18 C19 SING N N 36 
I8H C19 O4  DOUB N N 37 
I8H C23 N6  SING N N 38 
I8H C21 C20 SING N N 39 
I8H C21 C22 SING N N 40 
I8H N6  C22 SING N N 41 
I8H C22 O6  DOUB N N 42 
I8H N3  H1  SING N N 43 
I8H C4  H2  SING N N 44 
I8H C7  H3  SING N N 45 
I8H C10 H4  SING N N 46 
I8H C10 H5  SING N N 47 
I8H C10 H6  SING N N 48 
I8H C15 H7  SING N N 49 
I8H C15 H8  SING N N 50 
I8H C15 H9  SING N N 51 
I8H C17 H10 SING N N 52 
I8H C17 H11 SING N N 53 
I8H C17 H12 SING N N 54 
I8H C20 H13 SING N N 55 
I8H C20 H14 SING N N 56 
I8H C21 H15 SING N N 57 
I8H C24 H16 SING N N 58 
I8H C24 H17 SING N N 59 
I8H C28 H18 SING N N 60 
I8H C28 H19 SING N N 61 
I8H C28 H20 SING N N 62 
I8H C1  H21 SING N N 63 
I8H C2  H22 SING N N 64 
I8H C3  H23 SING N N 65 
I8H C3  H24 SING N N 66 
I8H N2  H25 SING N N 67 
I8H C9  H26 SING N N 68 
I8H C11 H27 SING N N 69 
I8H C11 H28 SING N N 70 
I8H C11 H29 SING N N 71 
I8H C12 H30 SING N N 72 
I8H C12 H31 SING N N 73 
I8H C12 H32 SING N N 74 
I8H N4  H33 SING N N 75 
I8H C16 H34 SING N N 76 
I8H C16 H35 SING N N 77 
I8H C16 H36 SING N N 78 
I8H C18 H37 SING N N 79 
I8H N5  H38 SING N N 80 
I8H N6  H39 SING N N 81 
I8H C23 H40 SING N N 82 
I8H C23 H41 SING N N 83 
I8H O5  H42 SING N N 84 
I8H C25 H43 SING N N 85 
I8H C25 H44 SING N N 86 
I8H C25 H45 SING N N 87 
I8H C27 H46 SING N N 88 
I8H C27 H47 SING N N 89 
I8H C27 H48 SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I8H InChI            InChI                1.06  "InChI=1S/C28H48N6O6/c1-26(2,3)20(32-25(40)33-27(4,5)6)24(39)34-13-15-17(28(15,7)8)18(34)22(37)31-16(19(35)23(38)29-9)12-14-10-11-30-21(14)36/h14-20,35H,10-13H2,1-9H3,(H,29,38)(H,30,36)(H,31,37)(H2,32,33,40)/t14-,15-,16-,17-,18-,19+,20+/m0/s1" 
I8H InChIKey         InChI                1.06  VFDRLCYAHUFIDR-ZYRLFZHTSA-N                                                                                                                                                                                                                         
I8H SMILES_CANONICAL CACTVS               3.385 "CNC(=O)[C@H](O)[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2[C@@H]3[C@H](CN2C(=O)[C@@H](NC(=O)NC(C)(C)C)C(C)(C)C)C3(C)C"                                                                                                                                     
I8H SMILES           CACTVS               3.385 "CNC(=O)[CH](O)[CH](C[CH]1CCNC1=O)NC(=O)[CH]2[CH]3[CH](CN2C(=O)[CH](NC(=O)NC(C)(C)C)C(C)(C)C)C3(C)C"                                                                                                                                                
I8H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)NC(C)(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](C(=O)NC)O)C"                                                                                                                                    
I8H SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)NC(C)(C)C)C(=O)NC(CC3CCNC3=O)C(C(=O)NC)O)C"                                                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           I8H 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(1~{R},2~{S},5~{S})-3-[(2~{S})-2-(~{tert}-butylcarbamoylamino)-3,3-dimethyl-butanoyl]-6,6-dimethyl-~{N}-[(2~{S},3~{R})-4-(methylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I8H "Create component"  2022-02-23 PDBE 
I8H "Initial release"   2022-04-27 RCSB 
I8H "Modify descriptor" 2022-08-22 RCSB 
I8H "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            I8H 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C18 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
