data_G5H
#

_chem_comp.id                                   G5H
_chem_comp.name                                 "5'-O-(N-(L-aspartyl)-sulfamoyl)uridine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H18 N4 O11 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-08-29
_chem_comp.pdbx_modified_date                   2019-12-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       438.367
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    G5H
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6HHW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G5H  "C5'"  C1   C  0  1  N  N  N  -19.746  -1.479  -14.630   0.051   2.389   0.442  "C5'"  G5H   1  
G5H  "O2'"  O1   O  0  1  N  N  N  -21.545   2.650  -14.995  -4.707   1.891   1.019  "O2'"  G5H   2  
G5H  "C4'"  C2   C  0  1  N  N  R  -20.583  -0.229  -14.728  -1.416   2.171   0.064  "C4'"  G5H   3  
G5H  "O4'"  O2   O  0  1  N  N  N  -21.810  -0.411  -13.995  -1.629   0.806  -0.357  "O4'"  G5H   4  
G5H  "C3'"  C3   C  0  1  N  N  S  -19.965   1.009  -14.101  -2.322   2.349   1.302  "C3'"  G5H   5  
G5H  "O3'"  O3   O  0  1  N  N  N  -19.054   1.614  -15.008  -2.897   3.658   1.318  "O3'"  G5H   6  
G5H  "C2'"  C4   C  0  1  N  N  R  -21.192   1.889  -13.847  -3.420   1.278   1.120  "C2'"  G5H   7  
G5H  "C1'"  C5   C  0  1  N  N  R  -22.293   0.852  -13.569  -3.047   0.579  -0.206  "C1'"  G5H   8  
G5H  C5     C6   C  0  1  N  N  N  -22.066   0.259   -9.895  -2.932  -2.945   0.880  C5     G5H   9  
G5H  C6     C7   C  0  1  N  N  N  -21.797   0.237  -11.212  -2.673  -1.622   0.803  C6     G5H  10  
G5H  C4     C8   C  0  1  N  N  N  -23.289   0.842   -9.430  -3.880  -3.514  -0.004  C4     G5H  11  
G5H  O4     O4   O  0  1  N  N  N  -23.644   0.922   -8.246  -4.127  -4.706   0.043  O4     G5H  12  
G5H  C2     C9   C  0  1  N  N  N  -23.871   1.321  -11.773  -4.227  -1.409  -0.957  C2     G5H  13  
G5H  O2     O5   O  0  1  N  N  N  -24.681   1.753  -12.580  -4.801  -0.709  -1.768  O2     G5H  14  
G5H  N      N1   N  0  1  N  N  N  -18.263  -7.003  -14.230   2.933  -2.426  -0.655  N      G5H  15  
G5H  CA     C10  C  0  1  N  N  S  -17.663  -5.676  -14.476   3.453  -1.272   0.091  CA     G5H  16  
G5H  C      C11  C  0  1  N  N  N  -18.398  -4.703  -13.567   2.927   0.001  -0.521  C      G5H  17  
G5H  O      O6   O  0  1  N  N  N  -19.452  -4.856  -12.953   2.508  -0.002  -1.659  O      G5H  18  
G5H  CB     C12  C  0  1  N  N  N  -17.776  -5.165  -15.915   4.982  -1.273   0.031  CB     G5H  19  
G5H  CG     C13  C  0  1  N  N  N  -16.744  -5.806  -16.834   5.512  -2.486   0.751  CG     G5H  20  
G5H  OD1    O7   O  0  1  N  N  N  -17.165  -6.285  -17.915   4.746  -3.269   1.261  OD1    G5H  21  
G5H  OD2    O8   O  0  1  N  N  N  -15.552  -5.815  -16.466   6.836  -2.696   0.827  OD2    G5H  22  
G5H  N1     N2   N  0  1  N  N  N  -22.663   0.768  -12.147  -3.328  -0.857  -0.123  N1     G5H  23  
G5H  N3     N3   N  0  1  N  N  N  -24.112   1.333  -10.420  -4.508  -2.724  -0.898  N3     G5H  24  
G5H  N3S    N4   N  0  1  N  N  N  -17.744  -3.426  -13.455   2.923   1.142   0.196  N3S    G5H  25  
G5H  O1S    O9   O  0  1  N  N  N  -18.502  -2.523  -11.270   2.443   3.540   0.529  O1S    G5H  26  
G5H  O2S    O10  O  0  1  N  N  N  -17.407  -1.043  -12.927   2.962   2.658  -1.751  O2S    G5H  27  
G5H  "O5'"  O11  O  0  1  N  N  N  -19.664  -1.820  -13.221   0.859   2.335  -0.736  "O5'"  G5H  28  
G5H  S      S1   S  0  1  N  N  N  -18.229  -2.159  -12.615   2.345   2.540  -0.477  S      G5H  29  
G5H  H1     H1   H  0  1  N  N  N  -20.221  -2.298  -15.191   0.163   3.364   0.915  H1     G5H  30  
G5H  H2     H2   H  0  1  N  N  N  -18.740  -1.294  -15.034   0.367   1.610   1.135  H2     G5H  31  
G5H  H3     H3   H  0  1  N  N  N  -22.308   3.182  -14.801  -4.965   2.395   1.803  H3     G5H  32  
G5H  H4     H4   H  0  1  N  N  N  -20.802  -0.023  -15.786  -1.710   2.863  -0.725  H4     G5H  33  
G5H  H5     H5   H  0  1  N  N  N  -19.480   0.752  -13.148  -1.758   2.168   2.217  H5     G5H  34  
G5H  H6     H6   H  0  1  N  N  N  -18.673   2.387  -14.607  -3.475   3.824   2.074  H6     G5H  35  
G5H  H7     H7   H  0  1  N  N  N  -21.033   2.524  -12.963  -3.401   0.567   1.947  H7     G5H  36  
G5H  H8     H8   H  0  1  N  N  N  -23.182   1.128  -14.156  -3.593   1.026  -1.037  H8     G5H  37  
G5H  H9     H9   H  0  1  N  N  N  -21.363  -0.161   -9.191  -2.419  -3.562   1.603  H9     G5H  38  
G5H  H10    H10  H  0  1  N  N  N  -20.874  -0.210  -11.549  -1.953  -1.171   1.470  H10    G5H  39  
G5H  H11    H11  H  0  1  N  N  N  -18.141  -7.251  -13.269   1.929  -2.484  -0.576  H11    G5H  40  
G5H  H12    H12  H  0  1  N  N  N  -19.239  -6.972  -14.445   3.218  -2.390  -1.622  H12    G5H  41  
G5H  H14    H14  H  0  1  N  N  N  -16.601  -5.696  -14.191   3.131  -1.336   1.130  H14    G5H  42  
G5H  H15    H15  H  0  1  N  N  N  -17.625  -4.075  -15.917   5.304  -1.299  -1.010  H15    G5H  43  
G5H  H16    H16  H  0  1  N  N  N  -18.782  -5.396  -16.295   5.365  -0.371   0.507  H16    G5H  44  
G5H  H17    H17  H  0  1  N  N  N  -15.019  -6.238  -17.129   7.128  -3.487   1.299  H17    G5H  45  
G5H  H18    H18  H  0  1  N  N  N  -24.975   1.741  -10.123  -5.159  -3.107  -1.507  H18    G5H  46  
G5H  H19    H19  H  0  1  N  N  N  -16.888  -3.321  -13.961   3.258   1.144   1.106  H19    G5H  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G5H  OD1    CG     DOUB  N  N   1  
G5H  CG     OD2    SING  N  N   2  
G5H  CG     CB     SING  N  N   3  
G5H  CB     CA     SING  N  N   4  
G5H  "O3'"  "C3'"  SING  N  N   5  
G5H  "O2'"  "C2'"  SING  N  N   6  
G5H  "C4'"  "C5'"  SING  N  N   7  
G5H  "C4'"  "C3'"  SING  N  N   8  
G5H  "C4'"  "O4'"  SING  N  N   9  
G5H  "C5'"  "O5'"  SING  N  N  10  
G5H  CA     N      SING  N  N  11  
G5H  CA     C      SING  N  N  12  
G5H  "C3'"  "C2'"  SING  N  N  13  
G5H  "O4'"  "C1'"  SING  N  N  14  
G5H  "C2'"  "C1'"  SING  N  N  15  
G5H  "C1'"  N1     SING  N  N  16  
G5H  C      N3S    SING  N  N  17  
G5H  C      O      DOUB  N  N  18  
G5H  N3S    S      SING  N  N  19  
G5H  "O5'"  S      SING  N  N  20  
G5H  O2S    S      DOUB  N  N  21  
G5H  S      O1S    DOUB  N  N  22  
G5H  O2     C2     DOUB  N  N  23  
G5H  N1     C2     SING  N  N  24  
G5H  N1     C6     SING  N  N  25  
G5H  C2     N3     SING  N  N  26  
G5H  C6     C5     DOUB  N  N  27  
G5H  N3     C4     SING  N  N  28  
G5H  C5     C4     SING  N  N  29  
G5H  C4     O4     DOUB  N  N  30  
G5H  "C5'"  H1     SING  N  N  31  
G5H  "C5'"  H2     SING  N  N  32  
G5H  "O2'"  H3     SING  N  N  33  
G5H  "C4'"  H4     SING  N  N  34  
G5H  "C3'"  H5     SING  N  N  35  
G5H  "O3'"  H6     SING  N  N  36  
G5H  "C2'"  H7     SING  N  N  37  
G5H  "C1'"  H8     SING  N  N  38  
G5H  C5     H9     SING  N  N  39  
G5H  C6     H10    SING  N  N  40  
G5H  N      H11    SING  N  N  41  
G5H  N      H12    SING  N  N  42  
G5H  CA     H14    SING  N  N  43  
G5H  CB     H15    SING  N  N  44  
G5H  CB     H16    SING  N  N  45  
G5H  OD2    H17    SING  N  N  46  
G5H  N3     H18    SING  N  N  47  
G5H  N3S    H19    SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G5H  InChI             InChI                 1.03   "InChI=1S/C13H18N4O11S/c14-5(3-8(19)20)11(23)16-29(25,26)27-4-6-9(21)10(22)12(28-6)17-2-1-7(18)15-13(17)24/h1-2,5-6,9-10,12,21-22H,3-4,14H2,(H,16,23)(H,19,20)(H,15,18,24)/t5-,6+,9+,10+,12+/m0/s1"  
G5H  InChIKey          InChI                 1.03   PZIPESDCQNILCW-TUVSRKGYSA-N  
G5H  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CC(O)=O)C(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)NC2=O"  
G5H  SMILES            CACTVS                3.385  "N[CH](CC(O)=O)C(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=O"  
G5H  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COS(=O)(=O)NC(=O)[C@H](CC(=O)O)N)O)O"  
G5H  SMILES            "OpenEye OEToolkits"  2.0.6  "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COS(=O)(=O)NC(=O)C(CC(=O)O)N)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          G5H
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(3~{S})-3-azanyl-4-[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxysulfonylamino]-4-oxidanylidene-butanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G5H  "Create component"  2018-08-29  EBI   
G5H  "Initial release"   2019-12-18  RCSB  
##
