data_G4H
# 
_chem_comp.id                                    G4H 
_chem_comp.name                                  "~{N}-[1-methyl-2-oxidanylidene-3-[1-[[4-(5-oxidanylidene-3-phenyl-6~{H}-1,6-naphthyridin-2-yl)phenyl]methyl]piperidin-4-yl]benzimidazol-5-yl]propanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C37 H36 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-08-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        612.720 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G4H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6HHJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G4H CAR C1  C 0 1 Y N N N N N 15.858 -11.802 -6.954  2.913  -0.922 1.243  CAR G4H 1  
G4H CAS C2  C 0 1 Y N N N N N 15.494 -10.462 -6.913  1.805  -1.641 1.645  CAS G4H 2  
G4H CAT C3  C 0 1 Y N N N N N 15.645 -9.663  -8.039  1.877  -3.017 1.767  CAT G4H 3  
G4H CAU C4  C 0 1 Y N N N N N 16.160 -10.206 -9.211  3.057  -3.681 1.487  CAU G4H 4  
G4H CAV C5  C 0 1 Y N N N N N 16.525 -11.547 -9.251  4.171  -2.974 1.084  CAV G4H 5  
G4H CBJ C6  C 0 1 Y N N N N N 16.360 -12.354 -8.127  4.104  -1.587 0.953  CBJ G4H 6  
G4H CBM C7  C 0 1 Y N N N N N 16.726 -13.700 -8.122  5.296  -0.821 0.520  CBM G4H 7  
G4H CBN C8  C 0 1 Y N N N N N 17.568 -14.104 -7.092  6.524  -1.019 1.146  CBN G4H 8  
G4H CBS C9  C 0 1 Y N N N N N 17.985 -15.423 -7.016  7.615  -0.273 0.699  CBS G4H 9  
G4H CBQ C10 C 0 1 N N N N N N 18.828 -15.844 -5.996  8.946  -0.411 1.296  CBQ G4H 10 
G4H OAN O1  O 0 1 N N N N N N 19.222 -15.053 -5.143  9.133  -1.195 2.210  OAN G4H 11 
G4H NBT N1  N 0 1 N N N N N N 19.234 -17.183 -5.938  9.962  0.338  0.823  NBT G4H 12 
G4H CBR C11 C 0 1 N N N N N N 18.819 -18.047 -6.848  9.794  1.226  -0.198 CBR G4H 13 
G4H CBO C12 C 0 1 N N N N N N 17.972 -17.649 -7.881  8.609  1.416  -0.802 CBO G4H 14 
G4H CBP C13 C 0 1 Y N N N N N 17.551 -16.327 -7.968  7.442  0.650  -0.362 CBP G4H 15 
G4H NBK N2  N 0 1 Y N N N N N 16.737 -15.924 -8.954  6.253  0.806  -0.931 NBK G4H 16 
G4H CBL C14 C 0 1 Y N N N N N 16.313 -14.652 -9.068  5.200  0.110  -0.533 CBL G4H 17 
G4H CBI C15 C 0 1 Y N N N N N 15.459 -14.383 -10.139 3.895  0.321  -1.200 CBI G4H 18 
G4H CBH C16 C 0 1 Y N N N N N 14.183 -13.863 -9.927  3.535  1.591  -1.649 CBH G4H 19 
G4H CBG C17 C 0 1 Y N N N N N 13.337 -13.618 -11.006 2.318  1.781  -2.270 CBG G4H 20 
G4H CBD C18 C 0 1 Y N N N N N 15.871 -14.681 -11.433 3.023  -0.751 -1.387 CBD G4H 21 
G4H CBE C19 C 0 1 Y N N N N N 15.025 -14.436 -12.513 1.810  -0.550 -2.014 CBE G4H 22 
G4H CBF C20 C 0 1 Y N N N N N 13.752 -13.909 -12.300 1.454  0.715  -2.448 CBF G4H 23 
G4H CBC C21 C 0 1 N N N N N N 12.896 -13.651 -13.371 0.129  0.928  -3.132 CBC G4H 24 
G4H NBB N3  N 0 1 N N N N N N 12.599 -14.838 -14.188 -0.894 1.252  -2.128 NBB G4H 25 
G4H CBA C22 C 0 1 N N N N N N 11.412 -15.518 -13.643 -2.138 1.696  -2.769 CBA G4H 26 
G4H CAZ C23 C 0 1 N N N N N N 10.986 -16.706 -14.504 -3.127 2.162  -1.698 CAZ G4H 27 
G4H CAW C24 C 0 1 N N N N N N 12.292 -14.375 -15.551 -1.135 0.110  -1.236 CAW G4H 28 
G4H CAX C25 C 0 1 N N N N N N 11.968 -15.545 -16.462 -2.094 0.528  -0.119 CAX G4H 29 
G4H CAY C26 C 0 1 N N N N N N 10.724 -16.233 -15.940 -3.412 1.005  -0.736 CAY G4H 30 
G4H NAQ N4  N 0 1 N N N N N N 10.311 -17.333 -16.862 -4.313 1.461  0.325  NAQ G4H 31 
G4H CAL C27 C 0 1 Y N N N N N 9.289  -17.315 -17.728 -5.571 0.934  0.608  CAL G4H 32 
G4H CAH C28 C 0 1 Y N N N N N 8.372  -16.381 -18.005 -6.321 -0.087 0.047  CAH G4H 33 
G4H CAI C29 C 0 1 N N N N N N 10.904 -18.513 -17.010 -4.063 2.457  1.196  CAI G4H 34 
G4H OAD O2  O 0 1 N N N N N N 11.889 -18.912 -16.393 -3.046 3.124  1.225  OAD G4H 35 
G4H NAJ N5  N 0 1 N N N N N N 10.272 -19.231 -17.922 -5.110 2.602  2.031  NAJ G4H 36 
G4H CAO C30 C 0 1 N N N N N N 10.621 -20.599 -18.359 -5.212 3.582  3.115  CAO G4H 37 
G4H CAK C31 C 0 1 Y N N N N N 9.267  -18.491 -18.375 -6.078 1.659  1.689  CAK G4H 38 
G4H CAE C32 C 0 1 Y N N N N N 8.350  -18.770 -19.298 -7.333 1.358  2.197  CAE G4H 39 
G4H CAF C33 C 0 1 Y N N N N N 7.377  -17.841 -19.623 -8.078 0.342  1.635  CAF G4H 40 
G4H CAG C34 C 0 1 Y N N N N N 7.388  -16.623 -18.964 -7.574 -0.386 0.563  CAG G4H 41 
G4H NAC N6  N 0 1 N N N N N N 6.447  -15.728 -19.272 -8.336 -1.415 -0.004 NAC G4H 42 
G4H CAB C35 C 0 1 N N N N N N 5.564  -15.403 -18.315 -7.725 -2.504 -0.512 CAB G4H 43 
G4H OAP O3  O 0 1 N N N N N N 5.577  -15.863 -17.176 -6.526 -2.638 -0.393 OAP G4H 44 
G4H CAA C36 C 0 1 N N N N N N 4.490  -14.400 -18.732 -8.533 -3.556 -1.227 CAA G4H 45 
G4H CAM C37 C 0 1 N N N N N N 4.374  -14.158 -20.237 -7.606 -4.677 -1.701 CAM G4H 46 
G4H H1  H1  H 0 1 N N N N N N 15.751 -12.417 -6.072  2.856  0.152  1.149  H1  G4H 47 
G4H H2  H2  H 0 1 N N N N N N 15.093 -10.040 -6.003  0.881  -1.127 1.866  H2  G4H 48 
G4H H3  H3  H 0 1 N N N N N N 15.363 -8.621  -8.004  1.007  -3.575 2.082  H3  G4H 49 
G4H H4  H4  H 0 1 N N N N N N 16.276 -9.587  -10.089 3.107  -4.755 1.584  H4  G4H 50 
G4H H5  H5  H 0 1 N N N N N N 16.938 -11.965 -10.157 5.093  -3.493 0.865  H5  G4H 51 
G4H H6  H6  H 0 1 N N N N N N 17.897 -13.390 -6.351  6.629  -1.729 1.953  H6  G4H 52 
G4H H7  H7  H 0 1 N N N N N N 19.141 -19.076 -6.790  10.646 1.798  -0.534 H7  G4H 53 
G4H H8  H8  H 0 1 N N N N N N 17.642 -18.369 -8.615  8.518  2.131  -1.607 H8  G4H 54 
G4H H10 H10 H 0 1 N N N N N N 13.849 -13.649 -8.922  4.208  2.425  -1.511 H10 G4H 55 
G4H H11 H11 H 0 1 N N N N N N 12.355 -13.201 -10.837 2.038  2.765  -2.618 H11 G4H 56 
G4H H12 H12 H 0 1 N N N N N N 16.850 -15.104 -11.602 3.296  -1.737 -1.041 H12 G4H 57 
G4H H13 H13 H 0 1 N N N N N N 15.356 -14.655 -13.517 1.132  -1.379 -2.155 H13 G4H 58 
G4H H14 H14 H 0 1 N N N N N N 13.365 -12.893 -14.016 0.215  1.751  -3.842 H14 G4H 59 
G4H H15 H15 H 0 1 N N N N N N 11.949 -13.258 -12.972 -0.157 0.020  -3.662 H15 G4H 60 
G4H H17 H17 H 0 1 N N N N N N 10.581 -14.798 -13.595 -1.922 2.522  -3.447 H17 G4H 61 
G4H H18 H18 H 0 1 N N N N N N 11.643 -15.879 -12.630 -2.573 0.870  -3.331 H18 G4H 62 
G4H H19 H19 H 0 1 N N N N N N 10.067 -17.147 -14.090 -2.698 2.997  -1.145 H19 G4H 63 
G4H H20 H20 H 0 1 N N N N N N 11.786 -17.461 -14.507 -4.056 2.478  -2.173 H20 G4H 64 
G4H H21 H21 H 0 1 N N N N N N 13.163 -13.836 -15.953 -1.575 -0.709 -1.805 H21 G4H 65 
G4H H22 H22 H 0 1 N N N N N N 11.427 -13.697 -15.514 -0.191 -0.216 -0.800 H22 G4H 66 
G4H H23 H23 H 0 1 N N N N N N 12.809 -16.254 -16.468 -2.285 -0.323 0.534  H23 G4H 67 
G4H H24 H24 H 0 1 N N N N N N 11.789 -15.180 -17.484 -1.649 1.338  0.459  H24 G4H 68 
G4H H25 H25 H 0 1 N N N N N N 9.914  -15.490 -15.906 -3.876 0.184  -1.282 H25 G4H 69 
G4H H26 H26 H 0 1 N N N N N N 8.394  -15.435 -17.484 -5.931 -0.650 -0.789 H26 G4H 70 
G4H H27 H27 H 0 1 N N N N N N 11.502 -20.949 -17.802 -4.304 4.184  3.147  H27 G4H 71 
G4H H28 H28 H 0 1 N N N N N N 9.774  -21.273 -18.165 -6.071 4.230  2.939  H28 G4H 72 
G4H H29 H29 H 0 1 N N N N N N 10.847 -20.594 -19.436 -5.337 3.062  4.064  H29 G4H 73 
G4H H30 H30 H 0 1 N N N N N N 8.365  -19.728 -19.797 -7.726 1.917  3.033  H30 G4H 74 
G4H H31 H31 H 0 1 N N N N N N 6.629  -18.060 -20.371 -9.055 0.107  2.032  H31 G4H 75 
G4H H32 H32 H 0 1 N N N N N N 6.402  -15.315 -20.182 -9.303 -1.344 -0.032 H32 G4H 76 
G4H H33 H33 H 0 1 N N N N N N 4.717  -13.438 -18.249 -9.280 -3.966 -0.547 H33 G4H 77 
G4H H34 H34 H 0 1 N N N N N N 3.519  -14.771 -18.371 -9.032 -3.109 -2.087 H34 G4H 78 
G4H H35 H35 H 0 1 N N N N N N 3.577  -13.425 -20.431 -6.859 -4.268 -2.381 H35 G4H 79 
G4H H36 H36 H 0 1 N N N N N N 5.330  -13.771 -20.621 -7.108 -5.124 -0.841 H36 G4H 80 
G4H H37 H37 H 0 1 N N N N N N 4.132  -15.104 -20.743 -8.190 -5.438 -2.218 H37 G4H 81 
G4H H16 H16 H 0 1 N N N N N N 19.841 -17.487 -5.204  10.841 0.243  1.222  H16 G4H 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G4H CAM CAA SING N N 1  
G4H CAF CAE DOUB Y N 2  
G4H CAF CAG SING Y N 3  
G4H CAE CAK SING Y N 4  
G4H NAC CAG SING N N 5  
G4H NAC CAB SING N N 6  
G4H CAG CAH DOUB Y N 7  
G4H CAA CAB SING N N 8  
G4H CAK NAJ SING N N 9  
G4H CAK CAL DOUB Y N 10 
G4H CAO NAJ SING N N 11 
G4H CAB OAP DOUB N N 12 
G4H CAH CAL SING Y N 13 
G4H NAJ CAI SING N N 14 
G4H CAL NAQ SING N N 15 
G4H CAI NAQ SING N N 16 
G4H CAI OAD DOUB N N 17 
G4H NAQ CAY SING N N 18 
G4H CAX CAY SING N N 19 
G4H CAX CAW SING N N 20 
G4H CAY CAZ SING N N 21 
G4H CAW NBB SING N N 22 
G4H CAZ CBA SING N N 23 
G4H NBB CBA SING N N 24 
G4H NBB CBC SING N N 25 
G4H CBC CBF SING N N 26 
G4H CBE CBF DOUB Y N 27 
G4H CBE CBD SING Y N 28 
G4H CBF CBG SING Y N 29 
G4H CBD CBI DOUB Y N 30 
G4H CBG CBH DOUB Y N 31 
G4H CBI CBH SING Y N 32 
G4H CBI CBL SING N N 33 
G4H CAV CAU DOUB Y N 34 
G4H CAV CBJ SING Y N 35 
G4H CAU CAT SING Y N 36 
G4H CBL NBK DOUB Y N 37 
G4H CBL CBM SING Y N 38 
G4H NBK CBP SING Y N 39 
G4H CBJ CBM SING N N 40 
G4H CBJ CAR DOUB Y N 41 
G4H CBM CBN DOUB Y N 42 
G4H CAT CAS DOUB Y N 43 
G4H CBP CBO SING N N 44 
G4H CBP CBS DOUB Y N 45 
G4H CBO CBR DOUB N N 46 
G4H CBN CBS SING Y N 47 
G4H CBS CBQ SING N N 48 
G4H CAR CAS SING Y N 49 
G4H CBR NBT SING N N 50 
G4H CBQ NBT SING N N 51 
G4H CBQ OAN DOUB N N 52 
G4H CAR H1  SING N N 53 
G4H CAS H2  SING N N 54 
G4H CAT H3  SING N N 55 
G4H CAU H4  SING N N 56 
G4H CAV H5  SING N N 57 
G4H CBN H6  SING N N 58 
G4H CBR H7  SING N N 59 
G4H CBO H8  SING N N 60 
G4H CBH H10 SING N N 61 
G4H CBG H11 SING N N 62 
G4H CBD H12 SING N N 63 
G4H CBE H13 SING N N 64 
G4H CBC H14 SING N N 65 
G4H CBC H15 SING N N 66 
G4H CBA H17 SING N N 67 
G4H CBA H18 SING N N 68 
G4H CAZ H19 SING N N 69 
G4H CAZ H20 SING N N 70 
G4H CAW H21 SING N N 71 
G4H CAW H22 SING N N 72 
G4H CAX H23 SING N N 73 
G4H CAX H24 SING N N 74 
G4H CAY H25 SING N N 75 
G4H CAH H26 SING N N 76 
G4H CAO H27 SING N N 77 
G4H CAO H28 SING N N 78 
G4H CAO H29 SING N N 79 
G4H CAE H30 SING N N 80 
G4H CAF H31 SING N N 81 
G4H NAC H32 SING N N 82 
G4H CAA H33 SING N N 83 
G4H CAA H34 SING N N 84 
G4H CAM H35 SING N N 85 
G4H CAM H36 SING N N 86 
G4H CAM H37 SING N N 87 
G4H NBT H16 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G4H InChI            InChI                1.03  "InChI=1S/C37H36N6O3/c1-3-34(44)39-27-13-14-32-33(21-27)43(37(46)41(32)2)28-16-19-42(20-17-28)23-24-9-11-26(12-10-24)35-29(25-7-5-4-6-8-25)22-30-31(40-35)15-18-38-36(30)45/h4-15,18,21-22,28H,3,16-17,19-20,23H2,1-2H3,(H,38,45)(H,39,44)" 
G4H InChIKey         InChI                1.03  NOAOWOIAXARUHL-UHFFFAOYSA-N                                                                                                                                                                                                                 
G4H SMILES_CANONICAL CACTVS               3.385 "CCC(=O)Nc1ccc2N(C)C(=O)N(C3CCN(CC3)Cc4ccc(cc4)c5nc6C=CNC(=O)c6cc5c7ccccc7)c2c1"                                                                                                                                                            
G4H SMILES           CACTVS               3.385 "CCC(=O)Nc1ccc2N(C)C(=O)N(C3CCN(CC3)Cc4ccc(cc4)c5nc6C=CNC(=O)c6cc5c7ccccc7)c2c1"                                                                                                                                                            
G4H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1ccc2c(c1)N(C(=O)N2C)C3CCN(CC3)Cc4ccc(cc4)c5c(cc6c(n5)C=CNC6=O)c7ccccc7"                                                                                                                                                          
G4H SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1ccc2c(c1)N(C(=O)N2C)C3CCN(CC3)Cc4ccc(cc4)c5c(cc6c(n5)C=CNC6=O)c7ccccc7"                                                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           G4H 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "~{N}-[1-methyl-2-oxidanylidene-3-[1-[[4-(5-oxidanylidene-3-phenyl-6~{H}-1,6-naphthyridin-2-yl)phenyl]methyl]piperidin-4-yl]benzimidazol-5-yl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G4H "Create component" 2018-08-28 EBI  
G4H "Initial release"  2019-02-20 RCSB 
G4H "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            G4H 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAM 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
