data_BGH
# 
_chem_comp.id                                    BGH 
_chem_comp.name                                  "[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-ethanoyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C13 H20 N5 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               G 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-10-04 
_chem_comp.pdbx_modified_date                    2018-10-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        421.300 
_chem_comp.one_letter_code                       G 
_chem_comp.three_letter_code                     BGH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6EK0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BGH "C1'" C1  C 0 1 N N R 239.432 258.190 242.003 0.198  -1.480 -0.680 "C1'" BGH 1  
BGH C2    C2  C 0 1 N N N 234.992 257.640 242.357 1.556  1.707  2.086  C2    BGH 2  
BGH "C2'" C3  C 0 1 N N R 239.179 259.643 241.676 0.036  -2.306 0.615  "C2'" BGH 3  
BGH "C3'" C4  C 0 1 N N R 240.248 260.301 242.498 -1.479 -2.249 0.910  "C3'" BGH 4  
BGH C4    C5  C 0 1 N N N 237.198 257.635 243.032 1.765  0.274  0.278  C4    BGH 5  
BGH "C4'" C6  C 0 1 N N R 241.411 259.407 242.270 -2.054 -1.395 -0.241 "C4'" BGH 6  
BGH C5    C7  C 0 1 N N N 236.773 257.177 244.364 3.025  0.786  0.007  C5    BGH 7  
BGH "C5'" C8  C 0 1 N N N 242.353 259.631 243.417 -3.182 -0.498 0.273  "C5'" BGH 8  
BGH C6    C9  C 0 1 N N N 235.325 256.956 244.577 3.540  1.795  0.835  C6    BGH 9  
BGH C8    C10 C 0 1 N N N 239.145 257.401 244.350 2.572  -0.840 -1.569 C8    BGH 10 
BGH N1    N1  N 0 1 N N N 234.537 257.224 243.540 2.787  2.242  1.861  N1    BGH 11 
BGH N2    N2  N 0 1 N N N 234.038 257.900 241.266 0.805  2.174  3.134  N2    BGH 12 
BGH N3    N3  N 0 1 N N N 236.280 257.843 242.092 1.068  0.758  1.319  N3    BGH 13 
BGH N7    N4  N 0 1 N N N 237.930 257.058 245.043 3.571  0.138  -1.119 N7    BGH 14 
BGH N9    N5  N 0 1 N N N 238.516 257.747 243.089 1.443  -0.708 -0.641 N9    BGH 15 
BGH "O2'" O1  O 0 1 N N N 239.442 259.915 240.313 0.455  -3.656 0.403  "O2'" BGH 16 
BGH "O3'" O2  O 0 1 N N N 240.565 261.636 242.181 -2.043 -3.562 0.892  "O3'" BGH 17 
BGH "O4'" O3  O 0 1 N N N 240.803 258.137 242.389 -0.942 -0.593 -0.697 "O4'" BGH 18 
BGH "O5'" O4  O 0 1 N N N 242.945 258.393 243.712 -3.728 0.252  -0.815 "O5'" BGH 19 
BGH O6    O5  O 0 1 N N N 234.801 256.583 245.636 4.647  2.268  0.623  O6    BGH 20 
BGH OP1   O6  O 0 1 N N N 244.196 258.732 245.871 -6.087 0.624  0.003  OP1   BGH 21 
BGH OP2   O7  O 0 1 N N N 241.927 257.857 245.992 -4.452 2.526  0.287  OP2   BGH 22 
BGH P     P1  P 0 1 N N N 243.185 257.879 245.197 -4.936 1.301  -0.637 P     BGH 23 
BGH C71   C11 C 0 1 N N N 238.152 256.687 246.353 4.776  0.372  -1.675 C71   BGH 24 
BGH C72   C12 C 0 1 N N N 237.504 255.548 247.067 5.261  -0.491 -2.812 C72   BGH 25 
BGH "C6'" C13 C 0 1 N N N 238.255 260.172 239.580 0.982  -4.291 1.569  "C6'" BGH 26 
BGH O71   O8  O 0 1 N N N 238.972 257.342 246.961 5.470  1.276  -1.261 O71   BGH 27 
BGH H1    H1  H 0 1 N N N 239.261 257.580 241.104 0.184  -2.132 -1.553 H1    BGH 28 
BGH H2    H2  H 0 1 N N N 238.173 259.958 241.991 0.602  -1.854 1.430  H2    BGH 29 
BGH H3    H3  H 0 1 N N N 239.959 260.234 243.557 -1.663 -1.769 1.871  H3    BGH 30 
BGH H4    H4  H 0 1 N N N 241.891 259.579 241.296 -2.414 -2.036 -1.046 H4    BGH 31 
BGH H5    H5  H 0 1 N N N 243.126 260.361 243.134 -3.963 -1.115 0.717  H5    BGH 32 
BGH H6    H6  H 0 1 N N N 241.800 260.003 244.292 -2.788 0.186  1.024  H6    BGH 33 
BGH H7    H7  H 0 1 N N N 239.836 256.550 244.260 2.252  -0.612 -2.586 H7    BGH 34 
BGH H8    H8  H 0 1 N N N 233.550 257.107 243.653 3.124  2.944  2.440  H8    BGH 35 
BGH H9    H9  H 0 1 N N N 234.369 258.214 240.376 1.153  2.877  3.705  H9    BGH 36 
BGH H10   H10 H 0 1 N N N 233.059 257.762 241.415 -0.074 1.801  3.305  H10   BGH 37 
BGH H11   H11 H 0 1 N N N 241.250 261.946 242.762 -2.992 -3.585 1.072  H11   BGH 38 
BGH H13   H13 H 0 1 N N N 242.033 258.395 246.768 -3.699 3.016  -0.072 H13   BGH 39 
BGH H14   H14 H 0 1 N N N 237.900 255.484 248.091 4.473  -1.185 -3.102 H14   BGH 40 
BGH H15   H15 H 0 1 N N N 236.417 255.709 247.104 5.520  0.141  -3.662 H15   BGH 41 
BGH H16   H16 H 0 1 N N N 237.718 254.611 246.532 6.140  -1.051 -2.493 H16   BGH 42 
BGH H17   H17 H 0 1 N N N 238.509 260.377 238.530 1.851  -3.737 1.923  H17   BGH 43 
BGH H18   H18 H 0 1 N N N 237.595 259.294 239.632 0.221  -4.310 2.348  H18   BGH 44 
BGH H19   H19 H 0 1 N N N 237.740 261.044 240.010 1.277  -5.312 1.325  H19   BGH 45 
BGH OP3   OP3 O 0 1 N N N 243.761 256.406 244.985 -5.378 1.860  -2.081 OP3   BGH 46 
BGH H20   H20 H 0 1 N N N 239.669 258.252 244.810 2.984  -1.848 -1.522 H20   BGH 47 
BGH H12   H12 H 0 1 N N N 244.644 256.358 245.332 -6.103 2.498  -2.051 H12   BGH 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BGH "C6'" "O2'" SING N N 1  
BGH "O2'" "C2'" SING N N 2  
BGH N2    C2    SING N N 3  
BGH "C2'" "C1'" SING N N 4  
BGH "C2'" "C3'" SING N N 5  
BGH "C1'" "O4'" SING N N 6  
BGH "C1'" N9    SING N N 7  
BGH N3    C2    DOUB N N 8  
BGH N3    C4    SING N N 9  
BGH "O3'" "C3'" SING N N 10 
BGH "C4'" "O4'" SING N N 11 
BGH "C4'" "C3'" SING N N 12 
BGH "C4'" "C5'" SING N N 13 
BGH C2    N1    SING N N 14 
BGH C4    N9    SING N N 15 
BGH C4    C5    DOUB N N 16 
BGH N9    C8    SING N N 17 
BGH "C5'" "O5'" SING N N 18 
BGH N1    C6    SING N N 19 
BGH "O5'" P     SING N N 20 
BGH C8    N7    SING N N 21 
BGH C5    C6    SING N N 22 
BGH C5    N7    SING N N 23 
BGH C6    O6    DOUB N N 24 
BGH N7    C71   SING N N 25 
BGH P     OP1   DOUB N N 26 
BGH P     OP2   SING N N 27 
BGH C71   O71   DOUB N N 28 
BGH C71   C72   SING N N 29 
BGH "C1'" H1    SING N N 30 
BGH "C2'" H2    SING N N 31 
BGH "C3'" H3    SING N N 32 
BGH "C4'" H4    SING N N 33 
BGH "C5'" H5    SING N N 34 
BGH "C5'" H6    SING N N 35 
BGH C8    H7    SING N N 36 
BGH N1    H8    SING N N 37 
BGH N2    H9    SING N N 38 
BGH N2    H10   SING N N 39 
BGH "O3'" H11   SING N N 40 
BGH OP2   H13   SING N N 41 
BGH C72   H14   SING N N 42 
BGH C72   H15   SING N N 43 
BGH C72   H16   SING N N 44 
BGH "C6'" H17   SING N N 45 
BGH "C6'" H18   SING N N 46 
BGH "C6'" H19   SING N N 47 
BGH P     OP3   SING N N 48 
BGH C8    H20   SING N N 49 
BGH OP3   H12   SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BGH InChI            InChI                1.03  "InChI=1S/C13H20N5O9P/c1-5(19)17-4-18(10-7(17)11(21)16-13(14)15-10)12-9(25-2)8(20)6(27-12)3-26-28(22,23)24/h6,8-9,12,20H,3-4H2,1-2H3,(H2,22,23,24)(H3,14,15,16,21)/t6-,8-,9-,12-/m1/s1" 
BGH InChIKey         InChI                1.03  RRIGHVHFMJOEOI-WOUKDFQISA-N                                                                                                                                                             
BGH SMILES_CANONICAL CACTVS               3.385 "CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2CN(C(C)=O)C3=C2N=C(N)NC3=O"                                                                                                             
BGH SMILES           CACTVS               3.385 "CO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2CN(C(C)=O)C3=C2N=C(N)NC3=O"                                                                                                                   
BGH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)N1CN(C2=C1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)OC"                                                                                                           
BGH SMILES           "OpenEye OEToolkits" 2.0.6 "CC(=O)N1CN(C2=C1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)O)O)OC"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BGH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-ethanoyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BGH "Create component"   2017-10-04 EBI  
BGH "Other modification" 2017-11-02 EBI  
BGH "Initial release"    2018-01-24 RCSB 
BGH "Other modification" 2018-10-20 EBI  
# 
