data_8LH
# 
_chem_comp.id                                    8LH 
_chem_comp.name                                  "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2~{R})-2-methyl-3-oxidanyl-propanoate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H20 N5 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-02-09 
_chem_comp.pdbx_modified_date                    2023-09-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        433.310 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8LH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5N44 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8LH C1  C4  C 0 1 Y N N -14.664 -39.965 10.562 4.533  0.696  -0.337 C1  8LH 1  
8LH C2  C5  C 0 1 Y N N -15.887 -40.015 11.116 4.925  1.743  0.514  C2  8LH 2  
8LH C3  C6  C 0 1 Y N N -15.992 -40.118 12.467 6.167  2.359  0.280  C3  8LH 3  
8LH C4  C8  C 0 1 Y N N -16.113 -39.808 8.965  2.975  1.067  1.179  C4  8LH 4  
8LH N1  N1  N 0 1 Y N N -14.912 -40.241 13.251 6.909  1.922  -0.732 N1  8LH 5  
8LH N2  N3  N 0 1 Y N N -13.546 -40.004 11.322 5.344  0.328  -1.323 N2  8LH 6  
8LH O1  OAE O 0 1 N N N -20.142 -38.146 7.093  -8.228 2.716  -0.974 O1  8LH 7  
8LH C5  CAK C 0 1 N N N -20.085 -39.544 6.920  -7.449 1.816  -0.183 C5  8LH 8  
8LH C6  CAZ C 0 1 N N R -19.697 -39.807 5.456  -6.084 1.609  -0.841 C6  8LH 9  
8LH C7  CAA C 0 1 N N N -20.754 -39.263 4.477  -5.309 2.928  -0.835 C7  8LH 10 
8LH C8  CAS C 0 1 N N N -18.298 -39.230 5.127  -5.310 0.567  -0.075 C8  8LH 11 
8LH O2  OAC O 0 1 N N N -17.782 -38.338 5.805  -5.800 0.044  0.898  O2  8LH 12 
8LH O3  OAQ O 0 1 N N N -17.702 -39.812 4.047  -4.076 0.220  -0.473 O3  8LH 13 
8LH P1  PBC P 0 1 N N N -16.382 -39.238 3.389  -3.314 -0.900 0.398  P1  8LH 14 
8LH O4  OAH O 0 1 N N N -16.759 -37.737 3.137  -4.102 -2.299 0.280  O4  8LH 15 
8LH O5  OAD O 0 1 N N N -15.946 -39.979 2.202  -3.270 -0.476 1.815  O5  8LH 16 
8LH O6  O5* O 0 1 N N N -15.239 -39.350 4.501  -1.813 -1.081 -0.155 O6  8LH 17 
8LH C9  C5* C 0 1 N N N -15.014 -40.604 5.143  -0.849 -1.928 0.473  C9  8LH 18 
8LH C10 C4* C 0 1 N N R -13.817 -40.442 6.042  0.466  -1.869 -0.306 C10 8LH 19 
8LH O7  O4* O 0 1 N N N -14.081 -39.349 6.962  1.088  -0.575 -0.145 O7  8LH 20 
8LH C11 C3* C 0 1 N N S -13.694 -41.649 6.886  1.485  -2.871 0.282  C11 8LH 21 
8LH O8  O3* O 0 1 N N N -12.959 -42.677 6.194  1.503  -4.075 -0.488 O8  8LH 22 
8LH C12 C2* C 0 1 N N R -12.916 -41.073 8.095  2.840  -2.138 0.172  C12 8LH 23 
8LH O9  O2* O 0 1 N N N -11.479 -40.830 7.784  3.737  -2.866 -0.669 O9  8LH 24 
8LH C13 C1* C 0 1 N N R -13.626 -39.746 8.284  2.480  -0.779 -0.469 C13 8LH 25 
8LH N3  N9  N 0 1 Y N N -14.805 -39.835 9.240  3.300  0.290  0.107  N3  8LH 26 
8LH N4  N7  N 0 1 Y N N -16.775 -39.904 10.117 3.932  1.915  1.419  N4  8LH 27 
8LH C14 C2  C 0 1 Y N N -13.634 -40.170 12.695 6.498  0.934  -1.505 C14 8LH 28 
8LH N5  N6  N 0 1 N N N -17.196 -40.111 13.027 6.605  3.396  1.085  N5  8LH 29 
8LH H1  H1  H 0 1 N N N -16.555 -39.723 7.983  2.058  0.989  1.745  H1  8LH 30 
8LH H2  H2  H 0 1 N N N -19.366 -37.748 6.716  -9.108 2.894  -0.616 H2  8LH 31 
8LH H3  H3  H 0 1 N N N -21.067 -39.990 7.135  -7.312 2.234  0.814  H3  8LH 32 
8LH H4  H4  H 0 1 N N N -19.330 -39.976 7.593  -7.965 0.859  -0.108 H4  8LH 33 
8LH H5  H5  H 0 1 N N N -19.645 -40.897 5.317  -6.223 1.274  -1.869 H5  8LH 34 
8LH H6  H6  H 0 1 N N N -21.738 -39.685 4.728  -4.336 2.780  -1.304 H6  8LH 35 
8LH H7  H7  H 0 1 N N N -20.795 -38.166 4.554  -5.869 3.681  -1.389 H7  8LH 36 
8LH H8  H8  H 0 1 N N N -20.484 -39.549 3.450  -5.169 3.262  0.194  H8  8LH 37 
8LH H9  H9  H 0 1 N N N -16.642 -37.531 2.217  -4.170 -2.637 -0.623 H9  8LH 38 
8LH H10 H10 H 0 1 N N N -15.896 -40.885 5.738  -0.682 -1.591 1.496  H10 8LH 39 
8LH H11 H11 H 0 1 N N N -14.816 -41.381 4.390  -1.219 -2.953 0.485  H11 8LH 40 
8LH H12 H12 H 0 1 N N N -12.904 -40.269 5.454  0.292  -2.080 -1.361 H12 8LH 41 
8LH H13 H13 H 0 1 N N N -14.683 -42.006 7.210  1.250  -3.086 1.324  H13 8LH 42 
8LH H14 H14 H 0 1 N N N -12.889 -43.445 6.749  2.125  -4.740 -0.163 H14 8LH 43 
8LH H15 H15 H 0 1 N N N -13.036 -41.718 8.978  3.276  -1.990 1.160  H15 8LH 44 
8LH H16 H16 H 0 1 N N N -11.044 -40.478 8.552  3.949  -3.752 -0.344 H16 8LH 45 
8LH H17 H17 H 0 1 N N N -12.908 -39.007 8.670  2.616  -0.821 -1.550 H17 8LH 46 
8LH H18 H18 H 0 1 N N N -12.749 -40.242 13.310 7.133  0.610  -2.316 H18 8LH 47 
8LH H19 H19 H 0 1 N N N -17.104 -40.205 14.018 6.054  3.706  1.820  H19 8LH 48 
8LH H20 H20 H 0 1 N N N -17.657 -39.249 12.816 7.464  3.813  0.913  H20 8LH 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8LH O5  P1  DOUB N N 1  
8LH O4  P1  SING N N 2  
8LH P1  O3  SING N N 3  
8LH P1  O6  SING N N 4  
8LH O3  C8  SING N N 5  
8LH C7  C6  SING N N 6  
8LH O6  C9  SING N N 7  
8LH C8  C6  SING N N 8  
8LH C8  O2  DOUB N N 9  
8LH C9  C10 SING N N 10 
8LH C6  C5  SING N N 11 
8LH C10 C11 SING N N 12 
8LH C10 O7  SING N N 13 
8LH O8  C11 SING N N 14 
8LH C11 C12 SING N N 15 
8LH C5  O1  SING N N 16 
8LH O7  C13 SING N N 17 
8LH O9  C12 SING N N 18 
8LH C12 C13 SING N N 19 
8LH C13 N3  SING N N 20 
8LH C4  N3  SING Y N 21 
8LH C4  N4  DOUB Y N 22 
8LH N3  C1  SING Y N 23 
8LH N4  C2  SING Y N 24 
8LH C1  C2  DOUB Y N 25 
8LH C1  N2  SING Y N 26 
8LH C2  C3  SING Y N 27 
8LH N2  C14 DOUB Y N 28 
8LH C3  N5  SING N N 29 
8LH C3  N1  DOUB Y N 30 
8LH C14 N1  SING Y N 31 
8LH C4  H1  SING N N 32 
8LH O1  H2  SING N N 33 
8LH C5  H3  SING N N 34 
8LH C5  H4  SING N N 35 
8LH C6  H5  SING N N 36 
8LH C7  H6  SING N N 37 
8LH C7  H7  SING N N 38 
8LH C7  H8  SING N N 39 
8LH O4  H9  SING N N 40 
8LH C9  H10 SING N N 41 
8LH C9  H11 SING N N 42 
8LH C10 H12 SING N N 43 
8LH C11 H13 SING N N 44 
8LH O8  H14 SING N N 45 
8LH C12 H15 SING N N 46 
8LH O9  H16 SING N N 47 
8LH C13 H17 SING N N 48 
8LH C14 H18 SING N N 49 
8LH N5  H19 SING N N 50 
8LH N5  H20 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8LH InChI            InChI                1.03  "InChI=1S/C14H20N5O9P/c1-6(2-20)14(23)28-29(24,25)26-3-7-9(21)10(22)13(27-7)19-5-18-8-11(15)16-4-17-12(8)19/h4-7,9-10,13,20-22H,2-3H2,1H3,(H,24,25)(H2,15,16,17)/t6-,7-,9-,10-,13-/m1/s1" 
8LH InChIKey         InChI                1.03  GTYNBQPSEMILMN-KWGHVAAJSA-N                                                                                                                                                               
8LH SMILES_CANONICAL CACTVS               3.385 "C[C@H](CO)C(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                                              
8LH SMILES           CACTVS               3.385 "C[CH](CO)C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"                                                                                                                    
8LH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@H](CO)C(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"                                                                                                               
8LH SMILES           "OpenEye OEToolkits" 2.0.6 "CC(CO)C(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O"                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           8LH 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2~{R})-2-methyl-3-oxidanyl-propanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8LH "Create component"   2017-02-09 EBI  
8LH "Initial release"    2019-08-28 RCSB 
8LH "Other modification" 2023-09-21 RCSB 
# 
