data_8AH
#

_chem_comp.id                                   8AH
_chem_comp.name                                 "5'-O-(dihydroxyphosphanyl)-2,8-dimethyladenosine"
_chem_comp.type                                 "RNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C12 H18 N5 O7 P"
_chem_comp.mon_nstd_parent_comp_id              A
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-26
_chem_comp.pdbx_modified_date                   2021-12-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       375.274
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8AH
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LVK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8AH  OP1     O1   O  0  1  N  N  N  221.780  219.856  210.066  -6.037   0.057   0.027  OP1     8AH   1  
8AH  P       P1   P  0  1  N  N  N  222.272  218.668  209.340  -4.971  -0.889   0.427  P       8AH   2  
8AH  OP2     O2   O  0  1  N  N  N  223.533  219.024  208.626  -4.756  -1.979  -0.738  OP2     8AH   3  
8AH  "O5'"   O3   O  0  1  N  N  N  221.088  217.992  208.396  -3.599  -0.081   0.666  "O5'"   8AH   4  
8AH  "C5'"   C1   C  0  1  N  N  N  219.755  217.873  208.835  -3.014   0.769  -0.322  "C5'"   8AH   5  
8AH  "C4'"   C2   C  0  1  N  N  R  218.850  218.837  208.124  -1.723   1.378   0.229  "C4'"   8AH   6  
8AH  "C3'"   C3   C  0  1  N  N  S  219.130  220.040  208.549  -1.140   2.379  -0.788  "C3'"   8AH   7  
8AH  "O3'"   O4   O  0  1  N  N  N  219.011  221.072  207.462  -1.057   3.685  -0.212  "O3'"   8AH   8  
8AH  "C2'"   C4   C  0  1  N  N  R  218.084  220.314  209.616   0.275   1.831  -1.092  "C2'"   8AH   9  
8AH  "O2'"   O5   O  0  1  N  N  N  217.779  221.634  209.717   1.227   2.893  -1.173  "O2'"   8AH  10  
8AH  "C1'"   C5   C  0  1  N  N  R  216.854  219.543  209.090   0.548   0.934   0.142  "C1'"   8AH  11  
8AH  "O4'"   O6   O  0  1  N  N  N  217.303  218.544  208.470  -0.740   0.347   0.424  "O4'"   8AH  12  
8AH  N9      N1   N  0  1  Y  N  N  216.020  218.991  210.166   1.528  -0.105  -0.182  N9      8AH  13  
8AH  C4      C6   C  0  1  Y  N  N  216.425  218.356  211.273   2.845  -0.129   0.204  C4      8AH  14  
8AH  C5      C7   C  0  1  Y  N  N  215.286  218.064  211.966   3.386  -1.307  -0.337  C5      8AH  15  
8AH  N7      N2   N  0  1  Y  N  N  214.259  218.459  211.224   2.391  -1.930  -1.013  N7      8AH  16  
8AH  C8      C8   C  0  1  Y  N  N  214.715  219.025  210.142   1.298  -1.229  -0.919  C8      8AH  17  
8AH  CM8     C9   C  0  1  N  N  N  213.881  219.661  209.035  -0.025  -1.603  -1.536  CM8     8AH  18  
8AH  N3      N3   N  0  1  Y  N  N  217.618  218.026  211.800   3.627   0.671   0.921  N3      8AH  19  
8AH  C2      C10  C  0  1  Y  N  N  217.688  217.384  212.944   4.891   0.368   1.124  C2      8AH  20  
8AH  CM2     C11  C  0  1  N  N  N  219.057  217.038  213.513   5.740   1.306   1.943  CM2     8AH  21  
8AH  N1      N4   N  0  1  Y  N  N  216.611  217.053  213.627   5.444  -0.728   0.636  N1      8AH  22  
8AH  C6      C12  C  0  1  Y  N  N  215.423  217.354  213.154   4.741  -1.588  -0.093  C6      8AH  23  
8AH  N6      N5   N  0  1  N  N  N  214.231  216.992  213.869   5.330  -2.733  -0.600  N6      8AH  24  
8AH  HOP2    H2   H  0  0  N  N  N  223.745  219.935  208.793  -4.070  -2.632  -0.544  HOP2    8AH  25  
8AH  "H5''"  H3   H  0  0  N  N  N  219.716  218.077  209.915  -2.788   0.186  -1.215  "H5''"  8AH  26  
8AH  "H5'"   H4   H  0  1  N  N  N  219.406  216.848  208.642  -3.713   1.566  -0.575  "H5'"   8AH  27  
8AH  "H4'"   H5   H  0  1  N  N  N  218.983  218.732  207.037  -1.923   1.884   1.174  "H4'"   8AH  28  
8AH  "H3'"   H6   H  0  1  N  N  N  220.131  220.102  209.001  -1.746   2.399  -1.694  "H3'"   8AH  29  
8AH  "HO3'"  H7   H  0  0  N  Y  N  219.223  221.929  207.814  -0.697   4.355  -0.809  "HO3'"  8AH  30  
8AH  "H2'"   H8   H  0  1  N  N  N  218.406  219.884  210.576   0.274   1.241  -2.010  "H2'"   8AH  31  
8AH  "HO2'"  H9   H  0  0  N  N  N  217.124  221.757  210.394   1.046   3.532  -1.875  "HO2'"  8AH  32  
8AH  "H1'"   H10  H  0  1  N  N  N  216.255  220.216  208.459   0.892   1.535   0.984  "H1'"   8AH  33  
8AH  HM82    H11  H  0  0  N  N  N  212.813  219.573  209.283  -0.088  -1.185  -2.540  HM82    8AH  34  
8AH  HM8     H12  H  0  1  N  N  N  214.149  220.724  208.939  -0.108  -2.689  -1.588  HM8     8AH  35  
8AH  HM81    H13  H  0  0  N  N  N  214.080  219.145  208.084  -0.836  -1.206  -0.925  HM81    8AH  36  
8AH  HM23    H14  H  0  0  N  N  N  219.840  217.403  212.833   5.685   1.021   2.994  HM23    8AH  37  
8AH  HM22    H15  H  0  0  N  N  N  219.176  217.514  214.498   6.774   1.249   1.605  HM22    8AH  38  
8AH  HM21    H16  H  0  0  N  N  N  219.144  215.947  213.620   5.374   2.325   1.824  HM21    8AH  39  
8AH  H61     H17  H  0  1  N  N  N  214.479  216.514  214.712   4.806  -3.353  -1.132  H61     8AH  40  
8AH  H62     H18  H  0  1  N  N  N  213.714  217.818  214.094   6.266  -2.916  -0.425  H62     8AH  41  
8AH  OP3     O7   O  0  1  N  Y  N  222.609  217.556  210.413  -5.398  -1.635   1.788  OP3     8AH  42  
8AH  HOP3    H20  H  0  0  N  N  N  222.424  217.889  211.283  -6.218  -2.143   1.717  HOP3    8AH  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8AH  "O3'"  "C3'"   SING  N  N   1  
8AH  "C4'"  "O4'"   SING  N  N   2  
8AH  "C4'"  "C3'"   SING  N  N   3  
8AH  "C4'"  "C5'"   SING  N  N   4  
8AH  "O5'"  "C5'"   SING  N  N   5  
8AH  "O5'"  P       SING  N  N   6  
8AH  "O4'"  "C1'"   SING  N  N   7  
8AH  "C3'"  "C2'"   SING  N  N   8  
8AH  OP2    P       SING  N  N   9  
8AH  CM8    C8      SING  N  N  10  
8AH  "C1'"  "C2'"   SING  N  N  11  
8AH  "C1'"  N9      SING  N  N  12  
8AH  P      OP1     DOUB  N  N  13  
8AH  "C2'"  "O2'"   SING  N  N  14  
8AH  C8     N9      SING  Y  N  15  
8AH  C8     N7      DOUB  Y  N  16  
8AH  N9     C4      SING  Y  N  17  
8AH  N7     C5      SING  Y  N  18  
8AH  C4     N3      DOUB  Y  N  19  
8AH  C4     C5      SING  Y  N  20  
8AH  N3     C2      SING  Y  N  21  
8AH  C5     C6      DOUB  Y  N  22  
8AH  C2     CM2     SING  N  N  23  
8AH  C2     N1      DOUB  Y  N  24  
8AH  C6     N1      SING  Y  N  25  
8AH  C6     N6      SING  N  N  26  
8AH  OP2    HOP2    SING  N  N  27  
8AH  "C5'"  "H5''"  SING  N  N  28  
8AH  "C5'"  "H5'"   SING  N  N  29  
8AH  "C4'"  "H4'"   SING  N  N  30  
8AH  "C3'"  "H3'"   SING  N  N  31  
8AH  "O3'"  "HO3'"  SING  N  N  32  
8AH  "C2'"  "H2'"   SING  N  N  33  
8AH  "O2'"  "HO2'"  SING  N  N  34  
8AH  "C1'"  "H1'"   SING  N  N  35  
8AH  CM8    HM82    SING  N  N  36  
8AH  CM8    HM8     SING  N  N  37  
8AH  CM8    HM81    SING  N  N  38  
8AH  CM2    HM23    SING  N  N  39  
8AH  CM2    HM22    SING  N  N  40  
8AH  CM2    HM21    SING  N  N  41  
8AH  N6     H61     SING  N  N  42  
8AH  N6     H62     SING  N  N  43  
8AH  P      OP3     SING  N  N  44  
8AH  OP3    HOP3    SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8AH  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC1OC(n2c(C)nc3c(N)nc(C)nc32)C(O)C1O"  
8AH  InChI             InChI                 1.03   "InChI=1S/C12H18N5O7P/c1-4-14-10(13)7-11(15-4)17(5(2)16-7)12-9(19)8(18)6(24-12)3-23-25(20,21)22/h6,8-9,12,18-19H,3H2,1-2H3,(H2,13,14,15)(H2,20,21,22)/t6-,8-,9-,12-/m1/s1"  
8AH  InChIKey          InChI                 1.03   YUHKBTJEYBIOJY-WOUKDFQISA-N  
8AH  SMILES_CANONICAL  CACTVS                3.385  "Cc1nc(N)c2nc(C)n([C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)c2n1"  
8AH  SMILES            CACTVS                3.385  "Cc1nc(N)c2nc(C)n([CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)c2n1"  
8AH  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1nc(c2c(n1)n(c(n2)C)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N"  
8AH  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1nc(c2c(n1)n(c(n2)C)C3C(C(C(O3)COP(=O)(O)O)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8AH  "SYSTEMATIC NAME"  ACDLabs               12.01  "2,8-dimethyladenosine 5'-(dihydrogen phosphate)"  
8AH  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-2,8-dimethyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8AH  "Create component"  2021-02-26  RCSB  
8AH  "Initial release"   2021-12-15  RCSB  
##
