data_5YH
# 
_chem_comp.id                                    5YH 
_chem_comp.name                                  "1-[(2R)-3-[3,6-bis(fluoranyl)carbazol-9-yl]-2-oxidanyl-propyl]imidazolidin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H17 F2 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-08-25 
_chem_comp.pdbx_modified_date                    2022-08-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        345.343 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5YH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7V8Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5YH C10 C1  C 0 1 N N N -7.083  28.873 -13.174 0.557  0.146  -1.590 C10 5YH 1  
5YH C13 C2  C 0 1 Y N N -9.249  27.429 -11.346 -1.313 2.541  -0.710 C13 5YH 2  
5YH C15 C3  C 0 1 Y N N -9.839  27.191 -9.033  -3.421 2.970  0.362  C15 5YH 3  
5YH C17 C4  C 0 1 Y N N -8.805  27.993 -8.582  -3.633 1.615  0.518  C17 5YH 4  
5YH C20 C5  C 0 1 Y N N -6.296  29.589 -10.841 -1.380 -1.097 -0.549 C20 5YH 5  
5YH C21 C6  C 0 1 Y N N -5.153  30.404 -11.123 -1.029 -2.436 -0.683 C21 5YH 6  
5YH C22 C7  C 0 1 Y N N -4.460  30.970 -10.047 -1.871 -3.422 -0.215 C22 5YH 7  
5YH C24 C8  C 0 1 Y N N -6.022  29.932 -8.409  -3.439 -1.768 0.536  C24 5YH 8  
5YH C02 C9  C 0 1 N N R -8.236  29.841 -13.739 1.670  0.215  -0.542 C02 5YH 9  
5YH C03 C10 C 0 1 N N N -8.289  29.861 -15.292 3.016  0.414  -1.240 C03 5YH 10 
5YH C05 C11 C 0 1 N N N -10.326 31.347 -15.601 4.562  1.706  0.418  C05 5YH 11 
5YH C06 C12 C 0 1 N N N -11.712 31.164 -16.297 5.671  1.212  1.367  C06 5YH 12 
5YH C08 C13 C 0 1 N N N -10.444 29.210 -16.529 4.773  -0.568 0.231  C08 5YH 13 
5YH C12 C14 C 0 1 Y N N -8.151  28.240 -10.944 -1.510 1.171  -0.561 C12 5YH 14 
5YH C14 C15 C 0 1 Y N N -10.134 26.890 -10.369 -2.263 3.429  -0.251 C14 5YH 15 
5YH C18 C16 C 0 1 Y N N -7.905  28.505 -9.549  -2.680 0.708  0.058  C18 5YH 16 
5YH C19 C17 C 0 1 Y N N -6.731  29.357 -9.487  -2.596 -0.764 0.066  C19 5YH 17 
5YH C23 C18 C 0 1 Y N N -4.938  30.703 -8.749  -3.074 -3.092 0.394  C23 5YH 18 
5YH F16 F1  F 0 1 N N N -10.724 26.740 -8.069  -4.342 3.852  0.806  F16 5YH 19 
5YH F25 F2  F 0 1 N N N -4.276  31.248 -7.684  -3.889 -4.068 0.848  F25 5YH 20 
5YH N04 N1  N 0 1 N N N -9.615  30.103 -15.784 4.082  0.479  -0.236 N04 5YH 21 
5YH N07 N2  N 0 1 N N N -11.682 29.833 -16.847 5.699  -0.242 1.150  N07 5YH 22 
5YH N11 N3  N 0 1 Y N N -7.166  28.888 -11.697 -0.743 0.076  -0.919 N11 5YH 23 
5YH O01 O1  O 0 1 N N N -7.992  31.206 -13.332 1.696  -1.003 0.205  O01 5YH 24 
5YH O09 O2  O 0 1 N N N -10.137 28.064 -16.860 4.579  -1.710 -0.141 O09 5YH 25 
5YH H1  H1  H 0 1 N N N -7.237  27.850 -13.547 0.594  1.037  -2.218 H1  5YH 26 
5YH H2  H2  H 0 1 N N N -6.097  29.237 -13.497 0.695  -0.740 -2.209 H2  5YH 27 
5YH H3  H3  H 0 1 N N N -9.411  27.222 -12.393 -0.414 2.908  -1.181 H3  5YH 28 
5YH H4  H4  H 0 1 N N N -8.689  28.220 -7.533  -4.534 1.259  0.995  H4  5YH 29 
5YH H5  H5  H 0 1 N N N -4.834  30.577 -12.140 -0.095 -2.704 -1.156 H5  5YH 30 
5YH H6  H6  H 0 1 N N N -3.590  31.589 -10.206 -1.592 -4.460 -0.323 H6  5YH 31 
5YH H7  H7  H 0 1 N N N -6.314  29.775 -7.381  -4.375 -1.512 1.010  H7  5YH 32 
5YH H8  H8  H 0 1 N N N -9.204  29.490 -13.352 1.483  1.051  0.132  H8  5YH 33 
5YH H9  H9  H 0 1 N N N -7.942  28.888 -15.671 3.203  -0.422 -1.914 H9  5YH 34 
5YH H10 H10 H 0 1 N N N -7.624  30.656 -15.659 2.996  1.343  -1.810 H10 5YH 35 
5YH H11 H11 H 0 1 N N N -9.772  32.175 -16.067 3.757  2.178  0.982  H11 5YH 36 
5YH H12 H12 H 0 1 N N N -10.462 31.554 -14.529 4.969  2.398  -0.319 H12 5YH 37 
5YH H13 H13 H 0 1 N N N -11.845 31.909 -17.095 6.629  1.657  1.100  H13 5YH 38 
5YH H14 H14 H 0 1 N N N -10.985 26.283 -10.643 -2.104 4.490  -0.370 H14 5YH 39 
5YH H15 H15 H 0 1 N N N -7.950  31.252 -12.384 1.858  -1.791 -0.332 H15 5YH 40 
5YH H16 H16 H 0 1 N N N -12.528 31.261 -15.565 5.419  1.441  2.402  H16 5YH 41 
5YH H17 H17 H 0 1 N N N -12.420 29.411 -17.373 6.291  -0.867 1.597  H17 5YH 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5YH O09 C08 DOUB N N 1  
5YH N07 C08 SING N N 2  
5YH N07 C06 SING N N 3  
5YH C08 N04 SING N N 4  
5YH C06 C05 SING N N 5  
5YH N04 C05 SING N N 6  
5YH N04 C03 SING N N 7  
5YH C03 C02 SING N N 8  
5YH C02 O01 SING N N 9  
5YH C02 C10 SING N N 10 
5YH C10 N11 SING N N 11 
5YH N11 C12 SING Y N 12 
5YH N11 C20 SING Y N 13 
5YH C13 C12 DOUB Y N 14 
5YH C13 C14 SING Y N 15 
5YH C21 C20 SING Y N 16 
5YH C21 C22 DOUB Y N 17 
5YH C12 C18 SING Y N 18 
5YH C20 C19 DOUB Y N 19 
5YH C14 C15 DOUB Y N 20 
5YH C22 C23 SING Y N 21 
5YH C18 C19 SING Y N 22 
5YH C18 C17 DOUB Y N 23 
5YH C19 C24 SING Y N 24 
5YH C15 C17 SING Y N 25 
5YH C15 F16 SING N N 26 
5YH C23 C24 DOUB Y N 27 
5YH C23 F25 SING N N 28 
5YH C10 H1  SING N N 29 
5YH C10 H2  SING N N 30 
5YH C13 H3  SING N N 31 
5YH C17 H4  SING N N 32 
5YH C21 H5  SING N N 33 
5YH C22 H6  SING N N 34 
5YH C24 H7  SING N N 35 
5YH C02 H8  SING N N 36 
5YH C03 H9  SING N N 37 
5YH C03 H10 SING N N 38 
5YH C05 H11 SING N N 39 
5YH C05 H12 SING N N 40 
5YH C06 H13 SING N N 41 
5YH C14 H14 SING N N 42 
5YH O01 H15 SING N N 43 
5YH C06 H16 SING N N 44 
5YH N07 H17 SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5YH InChI            InChI                1.03  "InChI=1S/C18H17F2N3O2/c19-11-1-3-16-14(7-11)15-8-12(20)2-4-17(15)23(16)10-13(24)9-22-6-5-21-18(22)25/h1-4,7-8,13,24H,5-6,9-10H2,(H,21,25)/t13-/m0/s1" 
5YH InChIKey         InChI                1.03  MUVYYQQLOKRDQS-ZDUSSCGKSA-N                                                                                                                            
5YH SMILES_CANONICAL CACTVS               3.385 "O[C@@H](CN1CCNC1=O)Cn2c3ccc(F)cc3c4cc(F)ccc24"                                                                                                        
5YH SMILES           CACTVS               3.385 "O[CH](CN1CCNC1=O)Cn2c3ccc(F)cc3c4cc(F)ccc24"                                                                                                          
5YH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1F)c3cc(ccc3n2C[C@H](CN4CCNC4=O)O)F"                                                                                                         
5YH SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1F)c3cc(ccc3n2CC(CN4CCNC4=O)O)F"                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           5YH 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[(2~{R})-3-[3,6-bis(fluoranyl)carbazol-9-yl]-2-oxidanyl-propyl]imidazolidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5YH "Create component" 2021-08-25 PDBJ 
5YH "Initial release"  2022-08-24 RCSB 
# 
