data_5LH
# 
_chem_comp.id                                    5LH 
_chem_comp.name                                  "(phenylmethyl) ~{N}-[(9~{S},12~{S},15~{S})-9-(hydroxymethyl)-12-(2-methylpropyl)-6,11,14-tris(oxidanylidene)-1,5,10,13,18,19-hexazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C27 H39 N7 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-10-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        557.642 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5E0H 
_chem_comp.pdbx_subcomponent_list                "PHQ 5LE LEU GAU" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5LH C26 C8  C 0 1 N N N N N N -22.337 40.526 -16.422 -1.860 1.580  -1.432 C1   PHQ 1  
5LH O27 O1  O 0 1 N N N N N N -22.786 40.407 -17.796 -2.143 2.619  -1.995 O1   PHQ 2  
5LH O35 O2  O 0 1 N N N N N N -22.007 41.621 -16.057 -2.797 0.627  -1.266 O2   PHQ 3  
5LH C1  C21 C 0 1 N N N N N N ?       ?      ?       -4.125 0.912  -1.780 C2   PHQ 4  
5LH C2  C27 C 0 1 Y N N N N N ?       ?      ?       -5.032 -0.260 -1.505 C3   PHQ 5  
5LH C3  C22 C 0 1 Y N N N N N ?       ?      ?       -5.751 -0.316 -0.326 C4   PHQ 6  
5LH C4  C23 C 0 1 Y N N N N N ?       ?      ?       -6.583 -1.391 -0.075 C5   PHQ 7  
5LH C5  C24 C 0 1 Y N N N N N ?       ?      ?       -6.696 -2.410 -1.002 C6   PHQ 8  
5LH C6  C25 C 0 1 Y N N N N N ?       ?      ?       -5.977 -2.354 -2.181 C7   PHQ 9  
5LH C7  C26 C 0 1 Y N N N N N ?       ?      ?       -5.148 -1.276 -2.435 C8   PHQ 10 
5LH N16 N1  N 0 1 N N N N N N -23.262 33.186 -13.520 -0.723 -2.568 2.516  N16  5LE 11 
5LH C17 C1  C 0 1 N N N N N N -23.903 34.083 -12.615 -1.329 -1.461 3.294  C17  5LE 12 
5LH C18 C2  C 0 1 N N N N N N -24.990 34.863 -13.517 -2.100 -0.555 2.331  C18  5LE 13 
5LH C19 C3  C 0 1 N N N N N N -25.640 35.862 -12.581 -2.467 0.749  3.042  C19  5LE 14 
5LH N20 N2  N 0 1 Y N N N N N -24.982 37.049 -12.921 -1.939 1.885  2.283  N20  5LE 15 
5LH C21 C4  C 0 1 Y N N N N N -23.753 37.492 -12.514 -0.980 1.825  1.329  C21  5LE 16 
5LH C22 C5  C 0 1 Y N N N N N -23.470 38.744 -13.127 -0.802 3.094  0.893  C22  5LE 17 
5LH C23 C6  C 0 1 N N N N N N -22.272 39.666 -13.017 0.160  3.556  -0.170 C23  5LE 18 
5LH C24 C7  C 0 1 N N S N N N -21.483 39.615 -14.288 0.412  2.415  -1.158 C24  5LE 19 
5LH N25 N3  N 0 1 N N N N N N -22.289 39.352 -15.499 -0.607 1.379  -0.978 N25  5LE 20 
5LH C36 C9  C 0 1 N N N N N N -20.456 38.531 -14.109 1.777  1.827  -0.909 C36  5LE 21 
5LH O37 O3  O 0 1 N N N N N N -20.571 37.462 -14.691 2.305  1.923  0.179  O37  5LE 22 
5LH N38 N4  N 0 1 Y N N N N N -24.582 38.953 -13.892 -1.649 3.858  1.593  N38  5LE 23 
5LH N39 N5  N 0 1 Y N N N N N -25.437 37.966 -13.778 -2.307 3.112  2.408  N39  5LE 24 
5LH N11 N6  N 0 1 N N N N N N -19.387 38.862 -13.208 2.408  1.181  -1.938 N    LEU 25 
5LH C06 C10 C 0 1 N N S N N N -18.306 37.980 -12.935 3.744  0.632  -1.603 CA   LEU 26 
5LH C05 C11 C 0 1 N N N N N N -18.815 36.787 -12.184 3.616  -0.859 -1.420 C    LEU 27 
5LH O12 O4  O 0 1 N N N N N N -19.798 36.867 -11.387 3.719  -1.606 -2.370 O    LEU 28 
5LH C07 C12 C 0 1 N N N N N N -17.274 38.680 -12.099 4.250  1.267  -0.306 CB   LEU 29 
5LH C08 C13 C 0 1 N N N N N N -16.750 39.961 -12.830 5.719  0.894  -0.096 CG   LEU 30 
5LH C10 C14 C 0 1 N N N N N N -15.823 39.625 -13.986 6.568  1.520  -1.204 CD1  LEU 31 
5LH C09 C15 C 0 1 N N N N N N -16.088 40.854 -11.796 6.188  1.417  1.263  CD2  LEU 32 
5LH N04 N7  N 0 1 N N N N N N -18.127 35.542 -12.401 3.385  -1.353 -0.172 N    GAU 33 
5LH C03 C16 C 0 1 N N S N N N -18.608 34.383 -11.743 3.265  -2.822 -0.062 CA   GAU 34 
5LH C13 C17 C 0 1 N N N N N N -19.367 33.573 -12.750 2.773  -3.173 1.343  CB   GAU 35 
5LH C14 C18 C 0 1 N N N N N N -20.848 34.150 -12.879 1.263  -3.416 1.309  CG   GAU 36 
5LH C15 C19 C 0 1 N N N N N N -21.800 33.164 -13.709 0.565  -2.347 2.110  CD   GAU 37 
5LH O40 O5  O 0 1 N N N N N N -21.369 32.358 -14.536 1.131  -1.310 2.384  OE1  GAU 38 
5LH C02 C20 C 0 1 N N N N N N -17.443 33.609 -11.227 2.263  -3.333 -1.099 C    GAU 39 
5LH O01 O6  O 0 1 N N N N N N -16.870 34.382 -10.339 2.022  -4.725 -0.882 OXT  GAU 40 
5LH H13 H13 H 0 1 N N N N N N ?       ?      ?       -4.521 1.801  -1.289 H21  PHQ 41 
5LH H34 H34 H 0 1 N N N N N N ?       ?      ?       -4.069 1.085  -2.855 H22  PHQ 42 
5LH H35 H35 H 0 1 N N N N N N ?       ?      ?       -5.663 0.480  0.398  H41  PHQ 43 
5LH H36 H36 H 0 1 N N N N N N ?       ?      ?       -7.145 -1.435 0.847  H51  PHQ 44 
5LH H37 H37 H 0 1 N N N N N N ?       ?      ?       -7.345 -3.250 -0.805 H61  PHQ 45 
5LH H38 H38 H 0 1 N N N N N N ?       ?      ?       -6.064 -3.150 -2.906 H71  PHQ 46 
5LH H39 H39 H 0 1 N N N N N N ?       ?      ?       -4.586 -1.232 -3.356 H81  PHQ 47 
5LH H2  H2  H 0 1 N N N N N N -24.397 33.529 -11.804 -2.011 -1.868 4.040  H22  5LE 48 
5LH H3  H3  H 0 1 N N N N N N -23.176 34.788 -12.187 -0.544 -0.889 3.789  H23  5LE 49 
5LH H4  H4  H 0 1 N N N N N N -24.497 35.382 -14.353 -1.479 -0.334 1.464  H24  5LE 50 
5LH H5  H5  H 0 1 N N N N N N -25.739 34.161 -13.912 -3.010 -1.061 2.007  H25  5LE 51 
5LH H6  H6  H 0 1 N N N N N N -26.722 35.938 -12.766 -3.552 0.832  3.112  H26  5LE 52 
5LH H7  H7  H 0 1 N N N N N N -25.465 35.596 -11.528 -2.037 0.750  4.044  H27  5LE 53 
5LH H8  H8  H 0 1 N N N N N N -23.098 36.971 -11.832 -0.461 0.943  0.986  H28  5LE 54 
5LH H10 H10 H 0 1 N N N N N N -22.617 40.696 -12.841 -0.266 4.408  -0.700 H29  5LE 55 
5LH H9  H9  H 0 1 N N N N N N -21.637 39.344 -12.178 1.101  3.850  0.294  H30  5LE 56 
5LH H11 H11 H 0 1 N N N N N N -20.959 40.574 -14.413 0.363  2.800  -2.177 H31  5LE 57 
5LH H1  H1  H 0 1 N N N N N N -23.825 32.548 -14.046 -1.201 -3.388 2.314  H2   5LE 58 
5LH H12 H12 H 0 1 N N N N N N -22.751 38.484 -15.680 -0.380 0.547  -0.533 H1   5LE 59 
5LH H14 H14 H 0 1 N N N N N N -19.404 39.752 -12.753 2.011  1.090  -2.818 H    LEU 60 
5LH H15 H15 H 0 1 N N N N N N -17.842 37.644 -13.874 4.440  0.843  -2.414 HA   LEU 61 
5LH H16 H16 H 0 1 N N N N N N -17.724 38.970 -11.138 4.156  2.351  -0.372 HB2  LEU 62 
5LH H17 H17 H 0 1 N N N N N N -16.431 37.997 -11.918 3.658  0.902  0.533  HB3  LEU 63 
5LH H18 H18 H 0 1 N N N N N N -17.623 40.494 -13.235 5.826  -0.190 -0.124 HG   LEU 64 
5LH H19 H19 H 0 1 N N N N N N -15.483 40.554 -14.466 6.299  1.077  -2.162 HD11 LEU 65 
5LH H20 H20 H 0 1 N N N N N N -14.953 39.068 -13.608 6.387  2.595  -1.237 HD12 LEU 66 
5LH H21 H21 H 0 1 N N N N N N -16.362 39.009 -14.721 7.623  1.336  -1.001 HD13 LEU 67 
5LH H22 H22 H 0 1 N N N N N N -16.800 41.066 -10.984 5.583  0.971  2.053  HD21 LEU 68 
5LH H23 H23 H 0 1 N N N N N N -15.204 40.345 -11.385 7.234  1.152  1.414  HD22 LEU 69 
5LH H24 H24 H 0 1 N N N N N N -15.781 41.798 -12.270 6.081  2.502  1.292  HD23 LEU 70 
5LH H25 H25 H 0 1 N N N N N N -17.329 35.496 -13.002 3.303  -0.774 0.601  H    GAU 71 
5LH H26 H26 H 0 1 N N N N N N -19.273 34.654 -10.910 4.237  -3.282 -0.236 HA   GAU 72 
5LH H27 H27 H 0 1 N N N N N N -19.408 32.524 -12.422 3.278  -4.074 1.691  HB2  GAU 73 
5LH H28 H28 H 0 1 N N N N N N -18.863 33.633 -13.726 2.992  -2.348 2.022  HB3  GAU 74 
5LH H29 H29 H 0 1 N N N N N N -20.808 35.122 -13.392 0.913  -3.389 0.277  HG2  GAU 75 
5LH H30 H30 H 0 1 N N N N N N -21.267 34.285 -11.871 1.042  -4.392 1.742  HG3  GAU 76 
5LH H31 H31 H 0 1 N N N N N N -17.781 32.673 -10.759 1.326  -2.783 -1.002 HO1  GAU 77 
5LH H32 H32 H 0 1 N N N N N N -16.743 33.379 -12.044 2.668  -3.186 -2.100 HO2  GAU 78 
5LH H33 H33 H 0 1 N N N N N N -16.114 33.938 -9.972  1.395  -5.117 -1.505 HXT  GAU 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5LH O27 C26 DOUB N N 1  
5LH C26 O35 SING N N 2  
5LH C26 N25 SING N N 3  
5LH N25 C24 SING N N 4  
5LH O37 C36 DOUB N N 5  
5LH O40 C15 DOUB N N 6  
5LH C24 C36 SING N N 7  
5LH C24 C23 SING N N 8  
5LH C36 N11 SING N N 9  
5LH C10 C08 SING N N 10 
5LH N38 N39 DOUB Y N 11 
5LH N38 C22 SING Y N 12 
5LH N39 N20 SING Y N 13 
5LH C15 N16 SING N N 14 
5LH C15 C14 SING N N 15 
5LH N16 C17 SING N N 16 
5LH C18 C17 SING N N 17 
5LH C18 C19 SING N N 18 
5LH N11 C06 SING N N 19 
5LH C22 C23 SING N N 20 
5LH C22 C21 DOUB Y N 21 
5LH C06 C05 SING N N 22 
5LH C06 C07 SING N N 23 
5LH N20 C19 SING N N 24 
5LH N20 C21 SING Y N 25 
5LH C14 C13 SING N N 26 
5LH C08 C07 SING N N 27 
5LH C08 C09 SING N N 28 
5LH C13 C03 SING N N 29 
5LH N04 C05 SING N N 30 
5LH N04 C03 SING N N 31 
5LH C05 O12 DOUB N N 32 
5LH C03 C02 SING N N 33 
5LH C02 O01 SING N N 34 
5LH N16 H1  SING N N 35 
5LH C17 H2  SING N N 36 
5LH C17 H3  SING N N 37 
5LH C18 H4  SING N N 38 
5LH C18 H5  SING N N 39 
5LH C19 H6  SING N N 40 
5LH C19 H7  SING N N 41 
5LH C21 H8  SING N N 42 
5LH C23 H9  SING N N 43 
5LH C23 H10 SING N N 44 
5LH C24 H11 SING N N 45 
5LH N25 H12 SING N N 46 
5LH N11 H14 SING N N 47 
5LH C06 H15 SING N N 48 
5LH C07 H16 SING N N 49 
5LH C07 H17 SING N N 50 
5LH C08 H18 SING N N 51 
5LH C10 H19 SING N N 52 
5LH C10 H20 SING N N 53 
5LH C10 H21 SING N N 54 
5LH C09 H22 SING N N 55 
5LH C09 H23 SING N N 56 
5LH C09 H24 SING N N 57 
5LH N04 H25 SING N N 58 
5LH C03 H26 SING N N 59 
5LH C13 H27 SING N N 60 
5LH C13 H28 SING N N 61 
5LH C14 H29 SING N N 62 
5LH C14 H30 SING N N 63 
5LH C02 H31 SING N N 64 
5LH C02 H32 SING N N 65 
5LH O01 H33 SING N N 66 
5LH O35 C1  SING N N 67 
5LH C1  C2  SING N N 68 
5LH C2  C3  DOUB Y N 69 
5LH C3  C4  SING Y N 70 
5LH C4  C5  DOUB Y N 71 
5LH C5  C6  SING Y N 72 
5LH C6  C7  DOUB Y N 73 
5LH C7  C2  SING Y N 74 
5LH C1  H13 SING N N 75 
5LH C1  H34 SING N N 76 
5LH C3  H35 SING N N 77 
5LH C4  H36 SING N N 78 
5LH C5  H37 SING N N 79 
5LH C6  H38 SING N N 80 
5LH C7  H39 SING N N 81 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5LH InChI            InChI                1.03  "InChI=1S/C27H39N7O6/c1-18(2)13-22-25(37)29-20(16-35)9-10-24(36)28-11-6-12-34-15-21(32-33-34)14-23(26(38)30-22)31-27(39)40-17-19-7-4-3-5-8-19/h3-5,7-8,15,18,20,22-23,35H,6,9-14,16-17H2,1-2H3,(H,28,36)(H,29,37)(H,30,38)(H,31,39)/t20-,22-,23-/m0/s1" 
5LH InChIKey         InChI                1.03  SAMHMGNFOZHCAI-PMVMPFDFSA-N                                                                                                                                                                                                                             
5LH SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@@H]1NC(=O)[C@H](Cc2cn(CCCNC(=O)CC[C@@H](CO)NC1=O)nn2)NC(=O)OCc3ccccc3"                                                                                                                                                                        
5LH SMILES           CACTVS               3.385 "CC(C)C[CH]1NC(=O)[CH](Cc2cn(CCCNC(=O)CC[CH](CO)NC1=O)nn2)NC(=O)OCc3ccccc3"                                                                                                                                                                             
5LH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC(C)C[C@H]1C(=O)N[C@@H](CCC(=O)NCCCn2cc(nn2)C[C@@H](C(=O)N1)NC(=O)OCc3ccccc3)CO"                                                                                                                                                                      
5LH SMILES           "OpenEye OEToolkits" 2.0.4 "CC(C)CC1C(=O)NC(CCC(=O)NCCCn2cc(nn2)CC(C(=O)N1)NC(=O)OCc3ccccc3)CO"                                                                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           5LH 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.4 
_pdbx_chem_comp_identifier.identifier        "(phenylmethyl) ~{N}-[(9~{S},12~{S},15~{S})-9-(hydroxymethyl)-12-(2-methylpropyl)-6,11,14-tris(oxidanylidene)-1,5,10,13,18,19-hexazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5LH "Create component"         2015-10-20 RCSB 
5LH "Modify subcomponent list" 2015-10-20 RCSB 
5LH "Other modification"       2015-10-20 RCSB 
5LH "Initial release"          2016-05-04 RCSB 
5LH "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5LH 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C02 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
