data_54H
#

_chem_comp.id                                   54H
_chem_comp.name                                 "5'-O-(D-valylsulfamoyl)adenosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H23 N7 O7 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5'-O-(3-Methyl-2-aminobutyrylsulfamoyl) adenosine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-04-01
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       445.451
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    54H
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3COZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
54H  C4      C4    C  0  1  Y  N  N  -0.625   -8.980  39.566   3.734   0.041   0.376  C4      54H   1  
54H  C5      C5    C  0  1  Y  N  N  -0.462   -9.947  40.544   3.973  -1.336   0.231  C5      54H   2  
54H  C6      C6    C  0  1  Y  N  N  -0.775   -9.594  41.856   5.297  -1.796   0.343  C6      54H   3  
54H  C8      C8    C  0  1  Y  N  N   0.135  -10.791  38.632   1.839  -1.024   0.005  C8      54H   4  
54H  N1      N1    N  0  1  Y  N  N  -1.219   -8.344  42.110   6.257  -0.908   0.580  N1      54H   5  
54H  N3      N3    N  0  1  Y  N  N  -1.069   -7.744  39.889   4.760   0.853   0.611  N3      54H   6  
54H  CG2     CG2   C  0  1  N  N  N   2.325   -8.405  31.067  -1.931  -4.182  -1.863  CG2     54H   7  
54H  CB      CB    C  0  1  N  N  N   2.964   -9.498  30.219  -2.047  -2.833  -1.150  CB      54H   8  
54H  CG1     CG1   C  0  1  N  N  N   1.948  -10.105  29.234  -2.115  -1.711  -2.188  CG1     54H   9  
54H  CA      CA    C  0  1  N  N  R   3.618  -10.609  31.067  -3.316  -2.815  -0.296  CA      54H  10  
54H  N       N     N  0  1  N  N  N   5.047  -10.303  31.335  -3.251  -3.892   0.701  N       54H  11  
54H  C       C     C  0  1  N  N  N   2.906  -10.928  32.418  -3.430  -1.487   0.407  C       54H  12  
54H  O       O     O  0  1  N  N  N   3.259  -10.382  33.473  -3.098  -1.385   1.569  O       54H  13  
54H  NAP     NAP   N  0  1  N  N  N   1.944  -11.865  32.343  -3.901  -0.412  -0.256  NAP     54H  14  
54H  SBD     SBD   S  0  1  N  N  N   1.206  -12.316  33.698  -4.026   1.048   0.516  SBD     54H  15  
54H  OAF     OAF   O  0  1  N  N  N   2.166  -13.143  34.481  -4.515   1.971  -0.447  OAF     54H  16  
54H  OAG     OAG   O  0  1  N  N  N  -0.036  -13.166  33.420  -4.682   0.794   1.751  OAG     54H  17  
54H  "O5'"   O5*   O  0  1  N  N  N   0.830  -11.139  34.488  -2.614   1.496   0.864  "O5'"   54H  18  
54H  "C5'"   C5*   C  0  1  N  N  N  -0.367  -10.409  34.101  -1.867   1.980  -0.254  "C5'"   54H  19  
54H  "C4'"   C4*   C  0  1  N  N  R  -0.448   -9.026  34.829  -0.470   2.401   0.210  "C4'"   54H  20  
54H  "O4'"   O4*   O  0  1  N  N  N  -0.970   -9.438  36.121   0.268   1.247   0.646  "O4'"   54H  21  
54H  "C3'"   C3*   C  0  1  N  N  S   0.902   -8.339  35.084   0.307   3.024  -0.966  "C3'"   54H  22  
54H  "O3'"   O3*   O  0  1  N  N  N   0.754   -6.910  34.947   0.674   4.372  -0.664  "O3'"   54H  23  
54H  "C2'"   C2*   C  0  1  N  N  R   1.154   -8.745  36.543   1.567   2.136  -1.101  "C2'"   54H  24  
54H  "O2'"   O2*   O  0  1  N  N  N   1.979   -7.808  37.202   2.726   2.931  -1.359  "O2'"   54H  25  
54H  "C1'"   C1*   C  0  1  N  N  R  -0.264   -8.764  37.123   1.650   1.475   0.299  "C1'"   54H  26  
54H  N9      N9    N  0  1  Y  N  N  -0.256   -9.518  38.401   2.381   0.207   0.228  N9      54H  27  
54H  N7      N7    N  0  1  Y  N  N  -0.004  -11.069  39.942   2.776  -1.927   0.002  N7      54H  28  
54H  C2      C2    C  0  1  Y  N  N  -1.349   -7.426  41.144   5.983   0.378   0.709  C2      54H  29  
54H  N6      N6    N  0  1  N  N  N  -0.649  -10.467  42.873   5.593  -3.141   0.210  N6      54H  30  
54H  H8      H8    H  0  1  N  N  N   0.501  -11.478  37.883   0.789  -1.220  -0.150  H8      54H  31  
54H  HG2     HG2   H  0  1  N  N  N   2.171   -8.777  32.091  -1.027  -4.195  -2.471  HG2     54H  32  
54H  HG2A    HG2A  H  0  0  N  N  N   2.987   -7.527  31.092  -1.883  -4.981  -1.123  HG2A    54H  33  
54H  HG2B    HG2B  H  0  0  N  N  N   1.356   -8.122  30.630  -2.802  -4.330  -2.502  HG2B    54H  34  
54H  HB      HB    H  0  1  N  N  N   3.768   -9.011  29.647  -1.177  -2.685  -0.510  HB      54H  35  
54H  HG1     HG1   H  0  1  N  N  N   0.984  -10.250  29.744  -1.211  -1.724  -2.796  HG1     54H  36  
54H  HG1A    HG1A  H  0  0  N  N  N   1.813   -9.424  28.381  -2.985  -1.860  -2.827  HG1A    54H  37  
54H  HG1B    HG1B  H  0  0  N  N  N   2.321  -11.075  28.874  -2.197  -0.751  -1.679  HG1B    54H  38  
54H  HA      HA    H  0  1  N  N  N   3.516  -11.511  30.446  -4.187  -2.964  -0.935  HA      54H  39  
54H  HN      HN    H  0  1  N  N  N   5.542  -10.234  30.469  -3.240  -4.797   0.255  HN      54H  40  
54H  HNA     HNA   H  0  1  N  N  N   5.115   -9.435  31.827  -2.453  -3.777   1.306  HNA     54H  41  
54H  HNAP    HNAP  H  0  0  N  N  N   1.694  -12.272  31.464  -4.167  -0.493  -1.185  HNAP    54H  42  
54H  "H5'"   H5*   H  0  1  N  N  N  -0.344  -10.239  33.015  -1.779   1.192  -1.002  "H5'"   54H  43  
54H  "H5'A"  H5*A  H  0  0  N  N  N  -1.246  -11.005  34.386  -2.379   2.839  -0.689  "H5'A"  54H  44  
54H  "H4'"   H4*   H  0  1  N  N  N  -1.023   -8.301  34.235  -0.552   3.119   1.026  "H4'"   54H  45  
54H  "H3'"   H3*   H  0  1  N  N  N   1.716   -8.616  34.398  -0.288   2.987  -1.879  "H3'"   54H  46  
54H  "HO3'"  HO3*  H  0  0  N  N  N   0.721   -6.511  35.808   1.166   4.813  -1.370  "HO3'"  54H  47  
54H  "H2'"   H2*   H  0  1  N  N  N   1.683   -9.703  36.653   1.433   1.384  -1.879  "H2'"   54H  48  
54H  "HO2'"  HO2*  H  0  0  N  N  N   2.164   -8.113  38.083   2.682   3.435  -2.183  "HO2'"  54H  49  
54H  "H1'"   H1*   H  0  1  N  N  N  -0.693   -7.779  37.358   2.120   2.150   1.015  "H1'"   54H  50  
54H  H2      H2    H  0  1  N  N  N  -1.682   -6.428  41.388   6.794   1.065   0.902  H2      54H  51  
54H  HN6     HN6   H  0  1  N  N  N  -0.618  -11.399  42.511   4.884  -3.779   0.037  HN6     54H  52  
54H  HN6A    HN6A  H  0  0  N  N  N   0.195  -10.276  43.374   6.511  -3.445   0.289  HN6A    54H  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
54H  C4     C5      DOUB  Y  N   1  
54H  C4     N3      SING  Y  N   2  
54H  C4     N9      SING  Y  N   3  
54H  C5     C6      SING  Y  N   4  
54H  C5     N7      SING  Y  N   5  
54H  C6     N1      DOUB  Y  N   6  
54H  C6     N6      SING  N  N   7  
54H  C8     N9      SING  Y  N   8  
54H  C8     N7      DOUB  Y  N   9  
54H  N1     C2      SING  Y  N  10  
54H  N3     C2      DOUB  Y  N  11  
54H  CG2    CB      SING  N  N  12  
54H  CB     CG1     SING  N  N  13  
54H  CB     CA      SING  N  N  14  
54H  CA     N       SING  N  N  15  
54H  CA     C       SING  N  N  16  
54H  C      O       DOUB  N  N  17  
54H  C      NAP     SING  N  N  18  
54H  NAP    SBD     SING  N  N  19  
54H  SBD    OAF     DOUB  N  N  20  
54H  SBD    OAG     DOUB  N  N  21  
54H  SBD    "O5'"   SING  N  N  22  
54H  "O5'"  "C5'"   SING  N  N  23  
54H  "C5'"  "C4'"   SING  N  N  24  
54H  "C4'"  "O4'"   SING  N  N  25  
54H  "C4'"  "C3'"   SING  N  N  26  
54H  "O4'"  "C1'"   SING  N  N  27  
54H  "C3'"  "O3'"   SING  N  N  28  
54H  "C3'"  "C2'"   SING  N  N  29  
54H  "C2'"  "O2'"   SING  N  N  30  
54H  "C2'"  "C1'"   SING  N  N  31  
54H  "C1'"  N9      SING  N  N  32  
54H  C8     H8      SING  N  N  33  
54H  CG2    HG2     SING  N  N  34  
54H  CG2    HG2A    SING  N  N  35  
54H  CG2    HG2B    SING  N  N  36  
54H  CB     HB      SING  N  N  37  
54H  CG1    HG1     SING  N  N  38  
54H  CG1    HG1A    SING  N  N  39  
54H  CG1    HG1B    SING  N  N  40  
54H  CA     HA      SING  N  N  41  
54H  N      HN      SING  N  N  42  
54H  N      HNA     SING  N  N  43  
54H  NAP    HNAP    SING  N  N  44  
54H  "C5'"  "H5'"   SING  N  N  45  
54H  "C5'"  "H5'A"  SING  N  N  46  
54H  "C4'"  "H4'"   SING  N  N  47  
54H  "C3'"  "H3'"   SING  N  N  48  
54H  "O3'"  "HO3'"  SING  N  N  49  
54H  "C2'"  "H2'"   SING  N  N  50  
54H  "O2'"  "HO2'"  SING  N  N  51  
54H  "C1'"  "H1'"   SING  N  N  52  
54H  C2     H2      SING  N  N  53  
54H  N6     HN6     SING  N  N  54  
54H  N6     HN6A    SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
54H  SMILES            ACDLabs               10.04  "O=C(NS(=O)(=O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)C(N)C(C)C"  
54H  SMILES_CANONICAL  CACTVS                3.341  "CC(C)[C@@H](N)C(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"  
54H  SMILES            CACTVS                3.341  "CC(C)[CH](N)C(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
54H  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(C)[C@H](C(=O)NS(=O)(=O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N"  
54H  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(C)C(C(=O)NS(=O)(=O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N"  
54H  InChI             InChI                 1.03   "InChI=1S/C15H23N7O7S/c1-6(2)8(16)14(25)21-30(26,27)28-3-7-10(23)11(24)15(29-7)22-5-20-9-12(17)18-4-19-13(9)22/h4-8,10-11,15,23-24H,3,16H2,1-2H3,(H,21,25)(H2,17,18,19)/t7-,8-,10-,11-,15-/m1/s1"  
54H  InChIKey          InChI                 1.03   TXCZGHBHNXNXMA-FGOODDOWSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
54H  "SYSTEMATIC NAME"  ACDLabs               10.04  "5'-O-(D-valylsulfamoyl)adenosine"  
54H  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl N-[(2R)-2-amino-3-methyl-butanoyl]sulfamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
54H  "Create component"      2008-04-01  RCSB  
54H  "Modify aromatic_flag"  2011-06-04  RCSB  
54H  "Modify descriptor"     2011-06-04  RCSB  
54H  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     54H
_pdbx_chem_comp_synonyms.name        "5'-O-(3-Methyl-2-aminobutyrylsulfamoyl) adenosine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
