data_4VH
#

_chem_comp.id                                   4VH
_chem_comp.name                                 "N-[2-[4-[(2S)-3-(2-hydroxyethylamino)-3-oxidanylidene-2-(2-phenoxyethanoylamino)propyl]-1,2,3-triazol-1-yl]ethyl]-4-[(2S,3R,4S,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-benzamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H38 N6 O10 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-08-06
_chem_comp.pdbx_modified_date                   2022-02-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       674.722
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    4VH
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7FIO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4VH  O5   O5   O  0  1  N  N  N  23.095  18.128  44.585   -8.894   0.455   0.376  O5   4VH   1  
4VH  C5   C5   C  0  1  N  N  R  24.191  18.184  43.639   -9.801   1.316  -0.315  C5   4VH   2  
4VH  C4   C4   C  0  1  N  N  R  24.826  16.789  43.421  -11.228   0.784  -0.158  C4   4VH   3  
4VH  C3   C3   C  0  1  N  N  S  25.118  16.186  44.754  -11.292  -0.650  -0.694  C3   4VH   4  
4VH  C2   C2   C  0  1  N  N  R  23.883  16.177  45.654  -10.266  -1.508   0.052  C2   4VH   5  
4VH  C1   C1   C  0  1  N  N  S  23.462  17.598  45.834   -8.876  -0.888  -0.114  C1   4VH   6  
4VH  C6   C6   C  0  1  N  N  N  23.619  18.811  42.386   -9.714   2.726   0.273  C6   4VH   7  
4VH  O4   O4   O  0  1  N  N  N  24.177  15.673  42.731  -11.591   0.794   1.224  O4   4VH   8  
4VH  O3   O3   O  0  1  N  N  N  25.534  14.854  44.601  -12.602  -1.180  -0.484  O3   4VH   9  
4VH  O6   O6   O  0  1  N  N  N  23.265  20.152  42.485   -8.415   3.267   0.023  O6   4VH  10  
4VH  S1   S1   S  0  1  N  N  N  22.038  17.649  46.936   -7.665  -1.858   0.825  S1   4VH  11  
4VH  O2   O2   O  0  1  N  N  N  24.264  15.524  46.872  -10.266  -2.831  -0.490  O2   4VH  12  
4VH  C7   C7   C  0  1  Y  N  N  21.821  19.383  47.114   -6.133  -1.096   0.402  C7   4VH  13  
4VH  C8   C8   C  0  1  Y  N  N  22.602  20.435  46.648   -6.115  -0.009  -0.469  C8   4VH  14  
4VH  C9   C9   C  0  1  Y  N  N  22.207  21.756  46.843   -4.925   0.586  -0.799  C9   4VH  15  
4VH  C10  C10  C  0  1  Y  N  N  21.048  22.051  47.565   -3.729   0.101  -0.262  C10  4VH  16  
4VH  C11  C11  C  0  1  Y  N  N  20.279  20.990  48.031   -3.750  -0.991   0.611  C11  4VH  17  
4VH  C12  C12  C  0  1  Y  N  N  20.659  19.678  47.824   -4.944  -1.579   0.943  C12  4VH  18  
4VH  C13  C13  C  0  1  N  N  N  20.541  23.450  47.815   -2.447   0.739  -0.616  C13  4VH  19  
4VH  O13  O13  O  0  1  N  N  N  21.316  24.368  48.077   -2.430   1.688  -1.376  O13  4VH  20  
4VH  N1   N1   N  0  1  N  N  N  19.229  23.665  47.600   -1.295   0.269  -0.097  N1   4VH  21  
4VH  C14  C14  C  0  1  N  N  N  18.743  24.935  47.113   -0.022   0.903  -0.449  C14  4VH  22  
4VH  C15  C15  C  0  1  N  N  N  18.329  25.748  48.261    1.122   0.184   0.269  C15  4VH  23  
4VH  N2   N2   N  0  1  Y  N  N  17.391  24.958  49.039    2.395   0.817  -0.082  N2   4VH  24  
4VH  C16  C16  C  0  1  Y  N  N  16.071  24.808  48.820    3.306   1.305   0.791  C16  4VH  25  
4VH  C17  C17  C  0  1  Y  N  N  15.665  23.919  49.769    4.321   1.796   0.043  C17  4VH  26  
4VH  N3   N3   N  0  1  Y  N  N  16.750  23.515  50.481    3.986   1.587  -1.235  N3   4VH  27  
4VH  N4   N4   N  0  1  Y  N  N  17.818  24.139  50.020    2.842   1.000  -1.276  N4   4VH  28  
4VH  C18  C18  C  0  1  N  N  N  14.300  23.428  50.065    5.581   2.450   0.549  C18  4VH  29  
4VH  C19  C19  C  0  1  N  N  S  13.803  22.420  49.021    6.799   1.723  -0.025  C19  4VH  30  
4VH  N5   N5   N  0  1  N  N  N  13.329  23.055  47.797    6.839   0.353   0.491  N5   4VH  31  
4VH  C20  C20  C  0  1  N  N  N  12.732  21.548  49.642    8.055   2.450   0.382  C20  4VH  32  
4VH  N6   N6   N  0  1  N  N  N  13.175  20.601  50.470    8.239   3.734   0.016  N6   4VH  33  
4VH  O7   O7   O  0  1  N  N  N  11.542  21.735  49.389    8.900   1.880   1.038  O7   4VH  34  
4VH  C21  C21  C  0  1  N  N  N  12.493  19.326  50.646    9.460   4.441   0.411  C21  4VH  35  
4VH  C22  C22  C  0  1  N  N  N  13.168  18.233  49.860    9.418   5.872  -0.128  C22  4VH  36  
4VH  O8   O8   O  0  1  N  N  N  12.528  17.977  48.612    8.349   6.585   0.497  O8   4VH  37  
4VH  C23  C23  C  0  1  N  N  N  12.508  24.107  47.738    7.469  -0.612  -0.207  C23  4VH  38  
4VH  O9   O9   O  0  1  N  N  N  12.644  25.043  46.952    8.003  -0.346  -1.263  O9   4VH  39  
4VH  C24  C24  C  0  1  N  N  N  11.291  24.110  48.610    7.510  -2.022   0.324  C24  4VH  40  
4VH  O10  O10  O  0  1  N  N  N  10.189  24.682  47.905    8.229  -2.854  -0.589  O10  4VH  41  
4VH  C25  C25  C  0  1  Y  N  N   9.182  23.872  47.467    8.359  -4.165  -0.257  C25  4VH  42  
4VH  C26  C26  C  0  1  Y  N  N   8.163  24.493  46.759    7.801  -4.643   0.920  C26  4VH  43  
4VH  C27  C27  C  0  1  Y  N  N   7.115  23.724  46.287    7.929  -5.977   1.253  C27  4VH  44  
4VH  C28  C28  C  0  1  Y  N  N   7.089  22.369  46.524    8.614  -6.837   0.414  C28  4VH  45  
4VH  C29  C29  C  0  1  Y  N  N   8.108  21.759  47.228    9.172  -6.364  -0.759  C29  4VH  46  
4VH  C30  C30  C  0  1  Y  N  N   9.176  22.501  47.690    9.045  -5.030  -1.097  C30  4VH  47  
4VH  H1   H1   H  0  1  N  N  N  24.972  18.851  44.032   -9.539   1.346  -1.373  H1   4VH  48  
4VH  H2   H2   H  0  1  N  N  N  25.793  16.962  42.927  -11.916   1.415  -0.721  H2   4VH  49  
4VH  H3   H3   H  0  1  N  N  N  25.905  16.775  45.248  -11.063  -0.651  -1.759  H3   4VH  50  
4VH  H4   H4   H  0  1  N  N  N  23.079  15.616  45.155  -10.524  -1.547   1.110  H4   4VH  51  
4VH  H5   H5   H  0  1  N  N  N  24.261  18.183  46.313   -8.602  -0.886  -1.169  H5   4VH  52  
4VH  H6   H6   H  0  1  N  N  N  22.718  18.244  42.107  -10.468   3.361  -0.193  H6   4VH  53  
4VH  H7   H7   H  0  1  N  N  N  24.372  18.719  41.589   -9.889   2.683   1.347  H7   4VH  54  
4VH  H8   H8   H  0  1  N  N  N  24.761  14.923  42.722  -12.485   0.469   1.398  H8   4VH  55  
4VH  H9   H9   H  0  1  N  N  N  25.717  14.479  45.454  -12.715  -2.087  -0.800  H9   4VH  56  
4VH  H10  H10  H  0  1  N  N  N  22.919  20.451  41.652   -8.288   4.161   0.369  H10  4VH  57  
4VH  H11  H11  H  0  1  N  N  N  23.521  15.497  47.463   -9.638  -3.430  -0.064  H11  4VH  58  
4VH  H12  H12  H  0  1  N  N  N  23.526  20.225  46.129   -7.039   0.366  -0.884  H12  4VH  59  
4VH  H13  H13  H  0  1  N  N  N  22.801  22.559  46.433   -4.911   1.429  -1.474  H13  4VH  60  
4VH  H14  H14  H  0  1  N  N  N  19.364  21.196  48.567   -2.828  -1.368   1.028  H14  4VH  61  
4VH  H15  H15  H  0  1  N  N  N  20.051  18.876  48.215   -4.961  -2.419   1.621  H15  4VH  62  
4VH  H16  H16  H  0  1  N  N  N  18.577  22.929  47.782   -1.309  -0.488   0.509  H16  4VH  63  
4VH  H17  H17  H  0  1  N  N  N  19.543  25.451  46.562    0.130   0.840  -1.527  H17  4VH  64  
4VH  H18  H18  H  0  1  N  N  N  17.884  24.772  46.445   -0.041   1.950  -0.145  H18  4VH  65  
4VH  H19  H19  H  0  1  N  N  N  19.205  26.004  48.875    0.970   0.246   1.347  H19  4VH  66  
4VH  H20  H20  H  0  1  N  N  N  17.844  26.671  47.912    1.140  -0.863  -0.035  H20  4VH  67  
4VH  H21  H21  H  0  1  N  N  N  15.469  25.286  48.061    3.236   1.304   1.869  H21  4VH  68  
4VH  H22  H22  H  0  1  N  N  N  13.612  24.286  50.083    5.599   3.494   0.237  H22  4VH  69  
4VH  H23  H23  H  0  1  N  N  N  14.306  22.941  51.051    5.605   2.396   1.638  H23  4VH  70  
4VH  H24  H24  H  0  1  N  N  N  14.652  21.770  48.764    6.728   1.700  -1.112  H24  4VH  71  
4VH  H25  H25  H  0  1  N  N  N  13.645  22.671  46.929    6.411   0.140   1.336  H25  4VH  72  
4VH  H26  H26  H  0  1  N  N  N  14.010  20.773  50.992    7.563   4.191  -0.509  H26  4VH  73  
4VH  H27  H27  H  0  1  N  N  N  11.453  19.425  50.302    9.530   4.464   1.499  H27  4VH  74  
4VH  H28  H28  H  0  1  N  N  N  12.502  19.059  51.713   10.327   3.923   0.002  H28  4VH  75  
4VH  H29  H29  H  0  1  N  N  N  13.155  17.310  50.458   10.363   6.370   0.089  H29  4VH  76  
4VH  H30  H30  H  0  1  N  N  N  14.209  18.530  49.667    9.259   5.850  -1.206  H30  4VH  77  
4VH  H31  H31  H  0  1  N  N  N  12.989  17.283  48.156    8.263   7.502   0.202  H31  4VH  78  
4VH  H32  H32  H  0  1  N  N  N  11.044  23.077  48.896    8.008  -2.031   1.293  H32  4VH  79  
4VH  H33  H33  H  0  1  N  N  N  11.492  24.702  49.515    6.493  -2.398   0.435  H33  4VH  80  
4VH  H34  H34  H  0  1  N  N  N   8.188  25.558  46.580    7.266  -3.971   1.576  H34  4VH  81  
4VH  H35  H35  H  0  1  N  N  N   6.314  24.189  45.731    7.495  -6.350   2.169  H35  4VH  82  
4VH  H36  H36  H  0  1  N  N  N   6.264  21.777  46.156    8.714  -7.880   0.676  H36  4VH  83  
4VH  H37  H37  H  0  1  N  N  N   8.069  20.697  47.418    9.706  -7.037  -1.413  H37  4VH  84  
4VH  H38  H38  H  0  1  N  N  N   9.991  22.025  48.215    9.477  -4.662  -2.016  H38  4VH  85  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4VH  C6   O6   SING  N  N   1  
4VH  C6   C5   SING  N  N   2  
4VH  O4   C4   SING  N  N   3  
4VH  C4   C5   SING  N  N   4  
4VH  C4   C3   SING  N  N   5  
4VH  C5   O5   SING  N  N   6  
4VH  O5   C1   SING  N  N   7  
4VH  O3   C3   SING  N  N   8  
4VH  C3   C2   SING  N  N   9  
4VH  C2   C1   SING  N  N  10  
4VH  C2   O2   SING  N  N  11  
4VH  C1   S1   SING  N  N  12  
4VH  C27  C28  DOUB  Y  N  13  
4VH  C27  C26  SING  Y  N  14  
4VH  C28  C29  SING  Y  N  15  
4VH  C8   C9   DOUB  Y  N  16  
4VH  C8   C7   SING  Y  N  17  
4VH  C26  C25  DOUB  Y  N  18  
4VH  C9   C10  SING  Y  N  19  
4VH  S1   C7   SING  N  N  20  
4VH  O9   C23  DOUB  N  N  21  
4VH  C14  N1   SING  N  N  22  
4VH  C14  C15  SING  N  N  23  
4VH  C7   C12  DOUB  Y  N  24  
4VH  C29  C30  DOUB  Y  N  25  
4VH  C25  C30  SING  Y  N  26  
4VH  C25  O10  SING  N  N  27  
4VH  C10  C13  SING  N  N  28  
4VH  C10  C11  DOUB  Y  N  29  
4VH  N1   C13  SING  N  N  30  
4VH  C23  N5   SING  N  N  31  
4VH  C23  C24  SING  N  N  32  
4VH  N5   C19  SING  N  N  33  
4VH  C13  O13  DOUB  N  N  34  
4VH  C12  C11  SING  Y  N  35  
4VH  O10  C24  SING  N  N  36  
4VH  C15  N2   SING  N  N  37  
4VH  O8   C22  SING  N  N  38  
4VH  C16  N2   SING  Y  N  39  
4VH  C16  C17  DOUB  Y  N  40  
4VH  C19  C20  SING  N  N  41  
4VH  C19  C18  SING  N  N  42  
4VH  N2   N4   SING  Y  N  43  
4VH  O7   C20  DOUB  N  N  44  
4VH  C20  N6   SING  N  N  45  
4VH  C17  C18  SING  N  N  46  
4VH  C17  N3   SING  Y  N  47  
4VH  C22  C21  SING  N  N  48  
4VH  N4   N3   DOUB  Y  N  49  
4VH  N6   C21  SING  N  N  50  
4VH  C5   H1   SING  N  N  51  
4VH  C4   H2   SING  N  N  52  
4VH  C3   H3   SING  N  N  53  
4VH  C2   H4   SING  N  N  54  
4VH  C1   H5   SING  N  N  55  
4VH  C6   H6   SING  N  N  56  
4VH  C6   H7   SING  N  N  57  
4VH  O4   H8   SING  N  N  58  
4VH  O3   H9   SING  N  N  59  
4VH  O6   H10  SING  N  N  60  
4VH  O2   H11  SING  N  N  61  
4VH  C8   H12  SING  N  N  62  
4VH  C9   H13  SING  N  N  63  
4VH  C11  H14  SING  N  N  64  
4VH  C12  H15  SING  N  N  65  
4VH  N1   H16  SING  N  N  66  
4VH  C14  H17  SING  N  N  67  
4VH  C14  H18  SING  N  N  68  
4VH  C15  H19  SING  N  N  69  
4VH  C15  H20  SING  N  N  70  
4VH  C16  H21  SING  N  N  71  
4VH  C18  H22  SING  N  N  72  
4VH  C18  H23  SING  N  N  73  
4VH  C19  H24  SING  N  N  74  
4VH  N5   H25  SING  N  N  75  
4VH  N6   H26  SING  N  N  76  
4VH  C21  H27  SING  N  N  77  
4VH  C21  H28  SING  N  N  78  
4VH  C22  H29  SING  N  N  79  
4VH  C22  H30  SING  N  N  80  
4VH  O8   H31  SING  N  N  81  
4VH  C24  H32  SING  N  N  82  
4VH  C24  H33  SING  N  N  83  
4VH  C26  H34  SING  N  N  84  
4VH  C27  H35  SING  N  N  85  
4VH  C28  H36  SING  N  N  86  
4VH  C29  H37  SING  N  N  87  
4VH  C30  H38  SING  N  N  88  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4VH  InChI             InChI                 1.03   "InChI=1S/C30H38N6O10S/c37-13-11-32-29(44)22(33-24(39)17-45-20-4-2-1-3-5-20)14-19-15-36(35-34-19)12-10-31-28(43)18-6-8-21(9-7-18)47-30-27(42)26(41)25(40)23(16-38)46-30/h1-9,15,22-23,25-27,30,37-38,40-42H,10-14,16-17H2,(H,31,43)(H,32,44)(H,33,39)/t22-,23+,25-,26-,27+,30-/m0/s1"  
4VH  InChIKey          InChI                 1.03   ZWUTXWGBJCMJNB-VGSBVMQVSA-N  
4VH  SMILES_CANONICAL  CACTVS                3.385  "OCCNC(=O)[C@H](Cc1cn(CCNC(=O)c2ccc(S[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)cc2)nn1)NC(=O)COc4ccccc4"  
4VH  SMILES            CACTVS                3.385  "OCCNC(=O)[CH](Cc1cn(CCNC(=O)c2ccc(S[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)cc2)nn1)NC(=O)COc4ccccc4"  
4VH  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)OCC(=O)N[C@@H](Cc2cn(nn2)CCNC(=O)c3ccc(cc3)S[C@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)O)O)C(=O)NCCO"  
4VH  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)OCC(=O)NC(Cc2cn(nn2)CCNC(=O)c3ccc(cc3)SC4C(C(C(C(O4)CO)O)O)O)C(=O)NCCO"  
#
_pdbx_chem_comp_identifier.comp_id          4VH
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[2-[4-[(2~{S})-3-(2-hydroxyethylamino)-3-oxidanylidene-2-(2-phenoxyethanoylamino)propyl]-1,2,3-triazol-1-yl]ethyl]-4-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-benzamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4VH  "Create component"    2021-08-06  PDBJ  
4VH  "Modify atom id"      2021-08-27  PDBJ  
4VH  "Initial release"     2022-02-16  RCSB  
4VH  "Other modification"  2022-02-15  PDBJ  
##
