data_3ZH
# 
_chem_comp.id                                    3ZH 
_chem_comp.name                                  "11-{4-[(2S)-2-amino-2-carboxyethyl]-3-(8-phenyloctyl)-2,3-dihydro-1H-imidazol-1-yl}undecanoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C31 H51 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               HIS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        529.754 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3ZH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4X9W 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3ZH CA  C8  C 0 1 N N S Y N N 37.596 24.780 15.822 1.938   -5.427 0.357  C8  3ZH 1  
3ZH C   C7  C 0 1 N N N Y N Y 37.441 24.479 14.341 2.935   -6.039 1.308  C7  3ZH 2  
3ZH C9  C9  C 0 1 N N N N N N 36.246 24.966 16.518 1.423   -4.108 0.938  C9  3ZH 3  
3ZH C11 C11 C 0 1 N N N N N N 35.040 26.350 14.719 -0.790  -3.550 -0.081 C11 3ZH 4  
3ZH O   O7  O 0 1 N N N Y N Y 37.822 25.300 13.498 2.594   -6.931 2.049  O7  3ZH 5  
3ZH N   N5  N 0 1 N N N Y Y N 38.431 25.961 15.952 0.812   -6.351 0.166  N5  3ZH 6  
3ZH C43 C43 C 0 1 N N N N N N 33.759 28.341 13.597 -2.772  -2.691 -1.456 C43 3ZH 7  
3ZH N3  N3  N 0 1 N N N N N N 34.425 27.621 14.687 -1.349  -2.806 -1.128 N3  3ZH 8  
3ZH C12 C12 C 0 1 N N N N N N 34.497 28.250 16.004 -0.229  -2.162 -1.832 C12 3ZH 9  
3ZH N4  N4  N 0 1 N N N N N N 35.332 27.307 16.737 0.969   -2.605 -1.100 N4  3ZH 10 
3ZH C10 C10 C 0 1 N N N N N N 35.530 26.133 15.971 0.521   -3.436 -0.066 C10 3ZH 11 
3ZH C13 C13 C 0 1 N N N N N N 35.763 27.649 18.092 2.358   -2.247 -1.396 C13 3ZH 12 
3ZH C14 C14 C 0 1 N N N N N N 34.636 27.524 19.081 2.732   -0.978 -0.627 C14 3ZH 13 
3ZH C15 C15 C 0 1 N N N N N N 35.108 27.396 20.485 4.183   -0.604 -0.937 C15 3ZH 14 
3ZH C16 C16 C 0 1 N N N N N N 34.090 26.741 21.338 4.558   0.665  -0.168 C16 3ZH 15 
3ZH C17 C17 C 0 1 N N N N N N 34.451 26.709 22.772 6.009   1.039  -0.477 C17 3ZH 16 
3ZH C18 C18 C 0 1 N N N N N N 33.301 26.341 23.618 6.383   2.307  0.292  C18 3ZH 17 
3ZH C19 C19 C 0 1 N N N N N N 32.768 24.920 23.343 7.834   2.682  -0.017 C19 3ZH 18 
3ZH C20 C20 C 0 1 N N N N N N 31.797 24.471 24.428 8.209   3.950  0.752  C20 3ZH 19 
3ZH C21 C21 C 0 1 Y N N N N N 32.429 24.511 25.796 9.638   4.319  0.447  C21 3ZH 20 
3ZH C26 C26 C 0 1 Y N N N N N 33.359 23.557 26.177 9.924   5.156  -0.615 C26 3ZH 21 
3ZH C25 C25 C 0 1 Y N N N N N 33.947 23.600 27.429 11.235  5.494  -0.894 C25 3ZH 22 
3ZH C24 C24 C 0 1 Y N N N N N 33.620 24.601 28.312 12.260  4.995  -0.112 C24 3ZH 23 
3ZH C23 C23 C 0 1 Y N N N N N 32.694 25.552 27.949 11.973  4.159  0.951  C23 3ZH 24 
3ZH C22 C22 C 0 1 Y N N N N N 32.100 25.506 26.702 10.662  3.824  1.233  C22 3ZH 25 
3ZH C33 C33 C 0 1 N N N N N N 41.336 27.424 15.166 -13.203 3.826  0.621  C33 3ZH 26 
3ZH O5  O5  O 0 1 N N N N N N 42.195 26.726 15.709 -13.711 3.043  -0.148 O5  3ZH 27 
3ZH C34 C34 C 0 1 N N N N N N 41.397 27.713 13.685 -11.740 3.707  0.959  C34 3ZH 28 
3ZH C35 C35 C 0 1 N N N N N N 40.834 29.061 13.275 -11.135 2.524  0.201  C35 3ZH 29 
3ZH C36 C36 C 0 1 N N N N N N 40.824 29.209 11.764 -9.649  2.404  0.544  C36 3ZH 30 
3ZH C37 C37 C 0 1 N N N N N N 39.519 28.766 11.139 -9.044  1.220  -0.213 C37 3ZH 31 
3ZH C38 C38 C 0 1 N N N N N N 38.419 29.791 11.317 -7.558  1.100  0.130  C38 3ZH 32 
3ZH C39 C39 C 0 1 N N N N N N 37.102 29.246 11.854 -6.954  -0.084 -0.628 C39 3ZH 33 
3ZH C40 C40 C 0 1 N N N N N N 36.044 29.037 10.798 -5.468  -0.204 -0.284 C40 3ZH 34 
3ZH C41 C41 C 0 1 N N N N N N 34.630 29.102 11.334 -4.863  -1.387 -1.042 C41 3ZH 35 
3ZH C42 C42 C 0 1 N N N N N N 34.268 27.943 12.222 -3.377  -1.508 -0.699 C42 3ZH 36 
3ZH HA  H3  H 0 1 N N N Y N N 38.106 23.927 16.293 2.420   -5.238 -0.602 H3  3ZH 37 
3ZH H15 H15 H 0 1 N N N N N N 35.635 24.064 16.366 0.864   -4.308 1.852  H15 3ZH 38 
3ZH H16 H16 H 0 1 N N N N N N 36.413 25.118 17.595 2.266   -3.456 1.162  H16 3ZH 39 
3ZH H17 H17 H 0 1 N N N N N N 35.110 25.664 13.888 -1.360  -4.137 0.624  H17 3ZH 40 
3ZH H   H41 H 0 1 N N N Y Y N 38.549 26.181 16.920 1.117   -7.206 -0.276 H41 3ZH 41 
3ZH H71 H71 H 0 1 N N N N N N 33.928 29.419 13.735 -2.885  -2.532 -2.529 H71 3ZH 42 
3ZH H70 H70 H 0 1 N N N N N N 32.680 28.130 13.646 -3.287  -3.608 -1.169 H70 3ZH 43 
3ZH H18 H18 H 0 1 N N N N N N 34.967 29.243 15.949 -0.188  -2.497 -2.868 H18 3ZH 44 
3ZH H19 H19 H 0 1 N N N N N N 33.500 28.341 16.460 -0.324  -1.077 -1.786 H19 3ZH 45 
3ZH H20 H20 H 0 1 N N N N N N 36.576 26.970 18.390 3.016   -3.062 -1.095 H20 3ZH 46 
3ZH H21 H21 H 0 1 N N N N N N 36.130 28.686 18.099 2.467   -2.069 -2.466 H21 3ZH 47 
3ZH H22 H22 H 0 1 N N N N N N 34.001 28.419 19.005 2.075   -0.163 -0.929 H22 3ZH 48 
3ZH H23 H23 H 0 1 N N N N N N 34.044 26.632 18.827 2.623   -1.156 0.442  H23 3ZH 49 
3ZH H25 H25 H 0 1 N N N N N N 36.029 26.794 20.500 4.841   -1.419 -0.635 H25 3ZH 50 
3ZH H24 H24 H 0 1 N N N N N N 35.319 28.399 20.885 4.292   -0.426 -2.006 H24 3ZH 51 
3ZH H26 H26 H 0 1 N N N N N N 33.142 27.288 21.230 3.900   1.480  -0.469 H26 3ZH 52 
3ZH H27 H27 H 0 1 N N N N N N 33.958 25.706 20.989 4.449   0.487  0.902  H27 3ZH 53 
3ZH H28 H28 H 0 1 N N N N N N 35.253 25.971 22.921 6.667   0.224  -0.175 H28 3ZH 54 
3ZH H29 H29 H 0 1 N N N N N N 34.809 27.705 23.071 6.118   1.217  -1.547 H29 3ZH 55 
3ZH H30 H30 H 0 1 N N N N N N 33.611 26.399 24.672 5.726   3.123  -0.009 H30 3ZH 56 
3ZH H31 H31 H 0 1 N N N N N N 32.489 27.060 23.434 6.274   2.129  1.362  H31 3ZH 57 
3ZH H33 H33 H 0 1 N N N N N N 32.249 24.914 22.373 8.492   1.867  0.284  H33 3ZH 58 
3ZH H32 H32 H 0 1 N N N N N N 33.616 24.220 23.309 7.943   2.860  -1.087 H32 3ZH 59 
3ZH H34 H34 H 0 1 N N N N N N 30.922 25.137 24.420 7.551   4.766  0.450  H34 3ZH 60 
3ZH H35 H35 H 0 1 N N N N N N 31.476 23.441 24.214 8.100   3.772  1.822  H35 3ZH 61 
3ZH H40 H40 H 0 1 N N N N N N 33.628 22.770 25.488 9.124   5.546  -1.227 H40 3ZH 62 
3ZH H39 H39 H 0 1 N N N N N N 34.665 22.845 27.713 11.459  6.148  -1.725 H39 3ZH 63 
3ZH H38 H38 H 0 1 N N N N N N 34.087 24.641 29.285 13.284  5.259  -0.330 H38 3ZH 64 
3ZH H37 H37 H 0 1 N N N N N N 32.430 26.338 28.642 12.774  3.769  1.562  H37 3ZH 65 
3ZH H36 H36 H 0 1 N N N N N N 31.371 26.255 26.431 10.438  3.174  2.066  H36 3ZH 66 
3ZH H52 H52 H 0 1 N N N N N N 40.829 26.931 13.160 -11.225 4.624  0.671  H52 3ZH 67 
3ZH H53 H53 H 0 1 N N N N N N 42.451 27.673 13.372 -11.626 3.548  2.031  H53 3ZH 68 
3ZH H55 H55 H 0 1 N N N N N N 41.455 29.858 13.710 -11.650 1.607  0.489  H55 3ZH 69 
3ZH H54 H54 H 0 1 N N N N N N 39.805 29.151 13.652 -11.248 2.683  -0.871 H54 3ZH 70 
3ZH H57 H57 H 0 1 N N N N N N 41.639 28.599 11.346 -9.134  3.320  0.257  H57 3ZH 71 
3ZH H56 H56 H 0 1 N N N N N N 40.992 30.267 11.514 -9.535  2.245  1.617  H56 3ZH 72 
3ZH H59 H59 H 0 1 N N N N N N 39.203 27.823 11.610 -9.559  0.303  0.074  H59 3ZH 73 
3ZH H58 H58 H 0 1 N N N N N N 39.680 28.603 10.063 -9.158  1.379  -1.286 H58 3ZH 74 
3ZH H61 H61 H 0 1 N N N N N N 38.780 30.559 12.017 -7.044  2.017  -0.158 H61 3ZH 75 
3ZH H60 H60 H 0 1 N N N N N N 38.222 30.252 10.338 -7.445  0.941  1.202  H60 3ZH 76 
3ZH H62 H62 H 0 1 N N N N N N 36.712 29.957 12.598 -7.468  -1.000 -0.340 H62 3ZH 77 
3ZH H63 H63 H 0 1 N N N N N N 37.301 28.279 12.340 -7.067  0.075  -1.700 H63 3ZH 78 
3ZH H64 H64 H 0 1 N N N N N N 36.198 28.047 10.343 -4.953  0.713  -0.572 H64 3ZH 79 
3ZH H65 H65 H 0 1 N N N N N N 36.161 29.816 10.030 -5.354  -0.363 0.788  H65 3ZH 80 
3ZH H66 H66 H 0 1 N N N N N N 34.520 30.031 11.913 -5.378  -2.304 -0.754 H66 3ZH 81 
3ZH H67 H67 H 0 1 N N N N N N 33.935 29.117 10.481 -4.976  -1.228 -2.114 H67 3ZH 82 
3ZH H68 H68 H 0 1 N N N N N N 33.483 27.358 11.721 -3.263  -1.666 0.374  H68 3ZH 83 
3ZH H69 H69 H 0 1 N N N N N N 35.164 27.318 12.354 -2.862  -0.591 -0.986 H69 3ZH 84 
3ZH OXT OXT O 0 1 N Y N Y N Y 36.862 23.319 14.026 4.201   -5.593 1.332  OXT 3ZH 85 
3ZH HXT HXT H 0 1 N Y N Y N Y 36.799 23.242 13.081 4.803   -6.017 1.958  HXT 3ZH 86 
3ZH O1  O1  O 0 1 N Y N N N N 40.290 27.929 15.826 -13.943 4.800  1.173  O1  3ZH 87 
3ZH H1  H1  H 0 1 N Y N N N N 40.332 27.664 16.737 -14.877 4.835  0.925  H1  3ZH 88 
3ZH H2  H2  H 0 1 N Y N Y Y N 39.324 25.784 15.539 0.349   -6.542 1.042  H2  3ZH 89 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3ZH C40 C41 SING N N 1  
3ZH C40 C39 SING N N 2  
3ZH C37 C38 SING N N 3  
3ZH C37 C36 SING N N 4  
3ZH C38 C39 SING N N 5  
3ZH C41 C42 SING N N 6  
3ZH C36 C35 SING N N 7  
3ZH C42 C43 SING N N 8  
3ZH C35 C34 SING N N 9  
3ZH O   C   DOUB N N 10 
3ZH C43 N3  SING N N 11 
3ZH C34 C33 SING N N 12 
3ZH C   CA  SING N N 13 
3ZH N3  C11 SING N N 14 
3ZH N3  C12 SING N N 15 
3ZH C11 C10 DOUB N N 16 
3ZH C33 O5  DOUB N N 17 
3ZH CA  N   SING N N 18 
3ZH CA  C9  SING N N 19 
3ZH C10 C9  SING N N 20 
3ZH C10 N4  SING N N 21 
3ZH C12 N4  SING N N 22 
3ZH N4  C13 SING N N 23 
3ZH C13 C14 SING N N 24 
3ZH C14 C15 SING N N 25 
3ZH C15 C16 SING N N 26 
3ZH C16 C17 SING N N 27 
3ZH C17 C18 SING N N 28 
3ZH C19 C18 SING N N 29 
3ZH C19 C20 SING N N 30 
3ZH C20 C21 SING N N 31 
3ZH C21 C26 DOUB Y N 32 
3ZH C21 C22 SING Y N 33 
3ZH C26 C25 SING Y N 34 
3ZH C22 C23 DOUB Y N 35 
3ZH C25 C24 DOUB Y N 36 
3ZH C23 C24 SING Y N 37 
3ZH CA  HA  SING N N 38 
3ZH C9  H15 SING N N 39 
3ZH C9  H16 SING N N 40 
3ZH C11 H17 SING N N 41 
3ZH N   H   SING N N 42 
3ZH C43 H71 SING N N 43 
3ZH C43 H70 SING N N 44 
3ZH C12 H18 SING N N 45 
3ZH C12 H19 SING N N 46 
3ZH C13 H20 SING N N 47 
3ZH C13 H21 SING N N 48 
3ZH C14 H22 SING N N 49 
3ZH C14 H23 SING N N 50 
3ZH C15 H25 SING N N 51 
3ZH C15 H24 SING N N 52 
3ZH C16 H26 SING N N 53 
3ZH C16 H27 SING N N 54 
3ZH C17 H28 SING N N 55 
3ZH C17 H29 SING N N 56 
3ZH C18 H30 SING N N 57 
3ZH C18 H31 SING N N 58 
3ZH C19 H33 SING N N 59 
3ZH C19 H32 SING N N 60 
3ZH C20 H34 SING N N 61 
3ZH C20 H35 SING N N 62 
3ZH C26 H40 SING N N 63 
3ZH C25 H39 SING N N 64 
3ZH C24 H38 SING N N 65 
3ZH C23 H37 SING N N 66 
3ZH C22 H36 SING N N 67 
3ZH C34 H52 SING N N 68 
3ZH C34 H53 SING N N 69 
3ZH C35 H55 SING N N 70 
3ZH C35 H54 SING N N 71 
3ZH C36 H57 SING N N 72 
3ZH C36 H56 SING N N 73 
3ZH C37 H59 SING N N 74 
3ZH C37 H58 SING N N 75 
3ZH C38 H61 SING N N 76 
3ZH C38 H60 SING N N 77 
3ZH C39 H62 SING N N 78 
3ZH C39 H63 SING N N 79 
3ZH C40 H64 SING N N 80 
3ZH C40 H65 SING N N 81 
3ZH C41 H66 SING N N 82 
3ZH C41 H67 SING N N 83 
3ZH C42 H68 SING N N 84 
3ZH C42 H69 SING N N 85 
3ZH C   OXT SING N N 86 
3ZH OXT HXT SING N N 87 
3ZH C33 O1  SING N N 88 
3ZH O1  H1  SING N N 89 
3ZH N   H2  SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3ZH SMILES           ACDLabs              12.01 "O=C(O)C(N)CC1=CN(CCCCCCCCCCC(=O)O)CN1CCCCCCCCc2ccccc2"                                                                                                                                                                
3ZH InChI            InChI                1.03  "InChI=1S/C31H51N3O4/c32-29(31(37)38)24-28-25-33(22-16-9-5-2-1-3-8-15-21-30(35)36)26-34(28)23-17-10-6-4-7-12-18-27-19-13-11-14-20-27/h11,13-14,19-20,25,29H,1-10,12,15-18,21-24,26,32H2,(H,35,36)(H,37,38)/t29-/m0/s1" 
3ZH InChIKey         InChI                1.03  XLNHNIRWMHVKSE-LJAQVGFWSA-N                                                                                                                                                                                            
3ZH SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CC1=CN(CCCCCCCCCCC(O)=O)CN1CCCCCCCCc2ccccc2)C(O)=O"                                                                                                                                                           
3ZH SMILES           CACTVS               3.385 "N[CH](CC1=CN(CCCCCCCCCCC(O)=O)CN1CCCCCCCCc2ccccc2)C(O)=O"                                                                                                                                                             
3ZH SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)CCCCCCCCN2CN(C=C2C[C@@H](C(=O)O)N)CCCCCCCCCCC(=O)O"                                                                                                                                                         
3ZH SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)CCCCCCCCN2CN(C=C2CC(C(=O)O)N)CCCCCCCCCCC(=O)O"                                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3ZH "SYSTEMATIC NAME" ACDLabs              12.01 "11-{4-[(2S)-2-amino-2-carboxyethyl]-3-(8-phenyloctyl)-2,3-dihydro-1H-imidazol-1-yl}undecanoic acid"         
3ZH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "11-[4-[(2S)-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]-3-(8-phenyloctyl)-2H-imidazol-1-yl]undecanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3ZH "Create component" 2014-12-12 RCSB 
3ZH "Initial release"  2015-07-29 RCSB 
3ZH "Modify backbone"  2023-11-03 PDBE 
3ZH "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            3ZH 
_pdbx_chem_comp_pcm.modified_residue_id                HIS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
