data_31H
# 
_chem_comp.id                                    31H 
_chem_comp.name                                  
;3'-deoxy-3'-[(N-formyl-L-methionyl)amino]adenosine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C16 H24 N7 O8 P S" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-05-18 
_chem_comp.pdbx_modified_date                    2014-08-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        505.443 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     31H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4QCM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
31H P      P      P 0 1 N N N 86.556 -43.840 -8.929  0.343  5.297  0.008  P      31H 1  
31H OP1    OP1    O 0 1 N N N 85.810 -42.937 -9.828  -1.007 5.600  0.535  OP1    31H 2  
31H OP2    OP2    O 0 1 N N N 87.446 -43.284 -7.881  1.441  5.574  1.153  OP2    31H 3  
31H "C1'"  "C1'"  C 0 1 N N R 88.774 -47.777 -7.648  1.871  -0.300 -0.507 "C1'"  31H 4  
31H "C2'"  "C2'"  C 0 1 N N R 88.081 -48.426 -6.452  1.034  -0.726 0.725  "C2'"  31H 5  
31H "O2'"  "O2'"  O 0 1 N N N 88.336 -49.852 -6.298  0.671  -2.105 0.644  "O2'"  31H 6  
31H "C3'"  "C3'"  C 0 1 N N S 86.610 -48.010 -6.677  -0.213 0.182  0.600  "C3'"  31H 7  
31H "N3'"  "N3'"  N 0 1 N N N 85.724 -48.991 -7.358  -1.316 -0.547 -0.033 "N3'"  31H 8  
31H "C4'"  "C4'"  C 0 1 N N S 86.710 -46.837 -7.652  0.254  1.344  -0.298 "C4'"  31H 9  
31H "O4'"  "O4'"  O 0 1 N N N 88.115 -46.511 -7.737  1.643  1.123  -0.595 "O4'"  31H 10 
31H "C5'"  "C5'"  C 0 1 N N N 85.933 -45.632 -7.119  0.085  2.673  0.441  "C5'"  31H 11 
31H "O5'"  "O5'"  O 0 1 N N N 85.510 -44.835 -8.227  0.410  3.752  -0.438 "O5'"  31H 12 
31H N9     N9     N 0 1 Y N N 90.259 -47.706 -7.464  3.292  -0.582 -0.289 N9     31H 13 
31H C8     C8     C 0 1 Y N N 90.925 -47.198 -6.437  4.226  0.294  0.179  C8     31H 14 
31H N7     N7     N 0 1 Y N N 92.215 -47.338 -6.654  5.387  -0.289 0.250  N7     31H 15 
31H C6     C6     C 0 1 Y N N 93.483 -48.289 -8.495  6.164  -2.651 -0.303 C6     31H 16 
31H N6     N6     N 0 1 N N N 94.686 -48.044 -7.966  7.501  -2.510 0.026  N6     31H 17 
31H C5     C5     C 0 1 Y N N 92.393 -47.921 -7.808  5.273  -1.574 -0.166 C5     31H 18 
31H C4     C4     C 0 1 Y N N 91.198 -48.164 -8.339  3.926  -1.779 -0.511 C4     31H 19 
31H N3     N3     N 0 1 Y N N 91.070 -48.764 -9.536  3.546  -2.974 -0.951 N3     31H 20 
31H C2     C2     C 0 1 Y N N 92.162 -49.126 -10.196 4.417  -3.955 -1.063 C2     31H 21 
31H N1     N1     N 0 1 Y N N 93.394 -48.885 -9.667  5.692  -3.810 -0.751 N1     31H 22 
31H C      C      C 0 1 N N N 84.382 -49.045 -7.123  -2.146 -1.297 0.718  C      31H 23 
31H O      O      O 0 1 N N N 83.835 -48.534 -6.145  -1.981 -1.369 1.917  O      31H 24 
31H CA     CA     C 0 1 N N S 83.569 -49.916 -8.093  -3.280 -2.046 0.068  CA     31H 25 
31H N      N      N 0 1 N N N 83.391 -51.283 -7.584  -3.725 -3.125 0.954  N      31H 26 
31H CN     CN     C 0 1 N N N 84.358 -52.178 -7.754  -4.190 -2.836 2.186  CN     31H 27 
31H OCN    OCN    O 0 1 N N N 84.223 -53.315 -7.331  -4.240 -1.683 2.560  OCN    31H 28 
31H CB     CB     C 0 1 N N N 82.214 -49.247 -8.354  -4.444 -1.087 -0.192 CB     31H 29 
31H CG     CG     C 0 1 N N N 81.428 -49.832 -9.532  -5.545 -1.817 -0.963 CG     31H 30 
31H SD     SD     S 0 1 N N N 80.000 -48.794 -10.027 -6.924 -0.679 -1.271 SD     31H 31 
31H CE     CE     C 0 1 N N N 79.180 -49.843 -11.210 -8.108 -1.709 -2.180 CE     31H 32 
31H HOP2   HOP2   H 0 0 N N N 87.426 -42.335 -7.919  2.350  5.396  0.877  HOP2   31H 33 
31H "H1'"  "H1'"  H 0 1 N N N 88.555 -48.375 -8.545  1.515  -0.804 -1.406 "H1'"  31H 34 
31H "H2'"  "H2'"  H 0 1 N N N 88.432 -47.911 -5.546  1.573  -0.521 1.651  "H2'"  31H 35 
31H "HO2'" "HO2'" H 0 0 N N N 87.871 -50.177 -5.536  1.426  -2.710 0.628  "HO2'" 31H 36 
31H "H3'"  "H3'"  H 0 1 N N N 86.165 -47.677 -5.728  -0.515 0.554  1.579  "H3'"  31H 37 
31H "HN3'" "HN3'" H 0 0 N N N 86.126 -49.633 -8.011  -1.448 -0.489 -0.992 "HN3'" 31H 38 
31H "H4'"  "H4'"  H 0 1 N N N 86.313 -47.133 -8.634  -0.327 1.357  -1.221 "H4'"  31H 39 
31H "H5'"  "H5'"  H 0 1 N N N 86.581 -45.036 -6.460  -0.948 2.775  0.774  "H5'"  31H 40 
31H "H5''" "H5''" H 0 0 N N N 85.054 -45.978 -6.555  0.749  2.695  1.305  "H5''" 31H 41 
31H H8     H8     H 0 1 N N N 90.481 -46.743 -5.564  4.031  1.321  0.449  H8     31H 42 
31H H61    N61    H 0 1 N N N 95.397 -48.375 -8.586  7.832  -1.661 0.356  H61    31H 43 
31H H62    N62    H 0 1 N N N 94.795 -47.060 -7.829  8.106  -3.262 -0.073 H62    31H 44 
31H H2     H14    H 0 1 N N N 92.074 -49.613 -11.156 4.076  -4.914 -1.423 H2     31H 45 
31H HA     H15    H 0 1 N N N 84.115 -49.961 -9.047  -2.941 -2.470 -0.878 HA     31H 46 
31H HN     H16    H 0 1 N N N 82.547 -51.538 -7.112  -3.685 -4.046 0.654  HN     31H 47 
31H HCN    H17    H 0 1 N N N 85.266 -51.899 -8.268  -4.518 -3.631 2.839  HCN    31H 48 
31H HB2    H18    H 0 1 N N N 82.392 -48.180 -8.556  -4.841 -0.732 0.759  HB2    31H 49 
31H HB3    H19    H 0 1 N N N 81.600 -49.351 -7.447  -4.091 -0.238 -0.778 HB3    31H 50 
31H HG3    H20    H 0 1 N N N 81.056 -50.827 -9.245  -5.148 -2.172 -1.914 HG3    31H 51 
31H HG2    H21    H 0 1 N N N 82.106 -49.928 -10.393 -5.898 -2.665 -0.377 HG2    31H 52 
31H HE1    H22    H 0 1 N N N 78.286 -49.332 -11.596 -8.397 -2.561 -1.563 HE1    31H 53 
31H HE2    H23    H 0 1 N N N 79.865 -50.062 -12.042 -8.992 -1.120 -2.421 HE2    31H 54 
31H HE3    H24    H 0 1 N N N 78.883 -50.783 -10.722 -7.647 -2.067 -3.100 HE3    31H 55 
31H OP3    OP3    O 0 1 N Y N ?      ?       ?       0.646  6.236  -1.264 OP3    31H 56 
31H HOP3   H1     H 0 0 N N N ?      ?       ?       0.622  7.183  -1.068 HOP3   31H 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
31H CE    SD     SING N N 1  
31H C2    N1     DOUB Y N 2  
31H C2    N3     SING Y N 3  
31H SD    CG     SING N N 4  
31H OP1   P      DOUB N N 5  
31H N1    C6     SING Y N 6  
31H N3    C4     DOUB Y N 7  
31H CG    CB     SING N N 8  
31H P     "O5'"  SING N N 9  
31H P     OP2    SING N N 10 
31H C6    N6     SING N N 11 
31H C6    C5     DOUB Y N 12 
31H CB    CA     SING N N 13 
31H C4    C5     SING Y N 14 
31H C4    N9     SING Y N 15 
31H "O5'" "C5'"  SING N N 16 
31H CA    N      SING N N 17 
31H CA    C      SING N N 18 
31H C5    N7     SING Y N 19 
31H CN    N      SING N N 20 
31H CN    OCN    DOUB N N 21 
31H "O4'" "C4'"  SING N N 22 
31H "O4'" "C1'"  SING N N 23 
31H "C4'" "C5'"  SING N N 24 
31H "C4'" "C3'"  SING N N 25 
31H "C1'" N9     SING N N 26 
31H "C1'" "C2'"  SING N N 27 
31H N9    C8     SING Y N 28 
31H "N3'" C      SING N N 29 
31H "N3'" "C3'"  SING N N 30 
31H C     O      DOUB N N 31 
31H "C3'" "C2'"  SING N N 32 
31H N7    C8     DOUB Y N 33 
31H "C2'" "O2'"  SING N N 34 
31H OP2   HOP2   SING N N 35 
31H "C1'" "H1'"  SING N N 36 
31H "C2'" "H2'"  SING N N 37 
31H "O2'" "HO2'" SING N N 38 
31H "C3'" "H3'"  SING N N 39 
31H "N3'" "HN3'" SING N N 40 
31H "C4'" "H4'"  SING N N 41 
31H "C5'" "H5'"  SING N N 42 
31H "C5'" "H5''" SING N N 43 
31H C8    H8     SING N N 44 
31H N6    H61    SING N N 45 
31H N6    H62    SING N N 46 
31H C2    H2     SING N N 47 
31H CA    HA     SING N N 48 
31H N     HN     SING N N 49 
31H CN    HCN    SING N N 50 
31H CB    HB2    SING N N 51 
31H CB    HB3    SING N N 52 
31H CG    HG3    SING N N 53 
31H CG    HG2    SING N N 54 
31H CE    HE1    SING N N 55 
31H CE    HE2    SING N N 56 
31H CE    HE3    SING N N 57 
31H P     OP3    SING N N 58 
31H OP3   HOP3   SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
31H SMILES           ACDLabs              12.01 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3NC(=O)C(NC=O)CCSC" 
31H InChI            InChI                1.03  
"InChI=1S/C16H24N7O8PS/c1-33-3-2-8(21-7-24)15(26)22-10-9(4-30-32(27,28)29)31-16(12(10)25)23-6-20-11-13(17)18-5-19-14(11)23/h5-10,12,16,25H,2-4H2,1H3,(H,21,24)(H,22,26)(H2,17,18,19)(H2,27,28,29)/t8-,9+,10+,12+,16+/m0/s1" 
31H InChIKey         InChI                1.03  FMKRZAWRBRBXQE-GBPQWNHNSA-N 
31H SMILES_CANONICAL CACTVS               3.370 "CSCC[C@H](NC=O)C(=O)N[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c(N)ncnc23" 
31H SMILES           CACTVS               3.370 "CSCC[CH](NC=O)C(=O)N[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c(N)ncnc23" 
31H SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CSCC[C@@H](C(=O)N[C@@H]1[C@H](O[C@H]([C@@H]1O)n2cnc3c2ncnc3N)COP(=O)(O)O)NC=O" 
31H SMILES           "OpenEye OEToolkits" 1.7.6 "CSCCC(C(=O)NC1C(OC(C1O)n2cnc3c2ncnc3N)COP(=O)(O)O)NC=O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
31H "SYSTEMATIC NAME" ACDLabs              12.01 
;3'-deoxy-3'-[(N-formyl-L-methionyl)amino]adenosine 5'-(dihydrogen phosphate)
;
31H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3-[[(2S)-2-formamido-4-methylsulfanyl-butanoyl]amino]-4-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
31H "Create component" 2014-05-18 RCSB 
31H "Initial release"  2014-08-20 RCSB 
# 
