data_YSG
#

_chem_comp.id                                   YSG
_chem_comp.name                                 "5-[3-(3-chloro-5-propoxyphenyl)-2-oxo-2H-[1,3'-bipyridin]-5-yl]pyrimidine-2,4(1H,3H)-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H19 Cl N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-30
_chem_comp.pdbx_modified_date                   2021-06-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       450.874
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YSG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M8M
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YSG  N1   N1   N   0  1  N  N  N  -24.435  -4.108  -22.190  -4.294  -3.257   1.436  N1   YSG   1  
YSG  C2   C1   C   0  1  N  N  N  -21.778  -4.426  -27.708   0.128   0.113  -0.251  C2   YSG   2  
YSG  N3   N2   N   0  1  N  N  N  -20.222  -4.899  -25.970  -1.535   1.832  -0.147  N3   YSG   3  
YSG  C4   C2   C   0  1  Y  N  N  -22.943  -3.121  -29.500   1.969  -1.003  -1.507  C4   YSG   4  
YSG  C5   C3   C   0  1  Y  N  N  -23.237  -2.831  -30.830   3.297  -1.363  -1.638  C5   YSG   5  
YSG  C6   C4   C   0  1  Y  N  N  -22.669  -3.578  -31.845   4.213  -1.008  -0.663  C6   YSG   6  
YSG  C8   C5   C   0  1  N  N  N  -20.037  -5.915  -32.489   6.059  -0.352   1.198  C8   YSG   7  
YSG  C1   C6   C   0  1  N  N  N  -20.481  -4.681  -27.276  -0.242   1.479  -0.269  C1   YSG   8  
YSG  C10  C7   C   0  1  N  N  N  -19.098  -5.318  -34.711   8.370  -0.315   2.146  C10  YSG   9  
YSG  C11  C8   C   0  1  Y  N  N  -21.504  -4.919  -30.219   2.473   0.073   0.592  C11  YSG  10  
YSG  C12  C9   C   0  1  N  N  N  -22.799  -4.370  -26.761  -0.853  -0.852  -0.106  C12  YSG  11  
YSG  C13  C10  C   0  1  N  N  N  -22.504  -4.573  -25.418  -2.197  -0.445   0.018  C13  YSG  12  
YSG  C14  C11  C   0  1  N  N  N  -23.606  -4.560  -24.356  -3.271  -1.457   0.174  C14  YSG  13  
YSG  C15  C12  C   0  1  N  N  N  -23.427  -4.065  -23.067  -3.298  -2.353   1.338  C15  YSG  14  
YSG  C16  C13  C   0  1  N  N  N  -24.844  -5.108  -24.673  -4.256  -1.579  -0.759  C16  YSG  15  
YSG  C17  C14  C   0  1  N  N  N  -25.612  -4.632  -22.526  -5.237  -3.335   0.481  C17  YSG  16  
YSG  C18  C15  C   0  1  N  N  N  -21.195  -4.846  -25.048  -2.508   0.895  -0.005  C18  YSG  17  
YSG  C19  C16  C   0  1  Y  N  N  -18.863  -5.139  -25.508  -1.883   3.189  -0.167  C19  YSG  18  
YSG  C20  C17  C   0  1  Y  N  N  -18.415  -6.377  -25.078  -2.240   3.809  -1.362  C20  YSG  19  
YSG  C21  C18  C   0  1  Y  N  N  -17.095  -6.495  -24.648  -2.576   5.152  -1.332  C21  YSG  20  
YSG  C22  C19  C   0  1  Y  N  N  -16.261  -5.379  -24.648  -2.548   5.828  -0.125  C22  YSG  21  
YSG  C23  C20  C   0  1  Y  N  N  -17.994  -4.052  -25.485  -1.884   3.933   1.005  C23  YSG  22  
YSG  C3   C21  C   0  1  Y  N  N  -22.077  -4.167  -29.187   1.551  -0.280  -0.391  C3   YSG  23  
YSG  C7   C22  C   0  1  Y  N  N  -21.803  -4.612  -31.550   3.803  -0.288   0.451  C7   YSG  24  
YSG  C9   C23  C   0  1  N  N  N  -19.589  -6.467  -33.839   6.921   0.124   2.369  C9   YSG  25  
YSG  N2   N3   N   0  1  N  N  N  -25.822  -5.129  -23.754  -5.229  -2.524  -0.590  N2   YSG  26  
YSG  N4   N4   N   0  1  Y  N  N  -16.729  -4.193  -25.071  -2.206   5.211   0.989  N4   YSG  27  
YSG  O1   O1   O   0  1  N  N  N  -19.458  -4.743  -28.220   0.613   2.339  -0.395  O1   YSG  28  
YSG  O2   O2   O   0  1  N  N  N  -21.289  -5.321  -32.648   4.706   0.058   1.406  O2   YSG  29  
YSG  O3   O3   O   0  1  N  N  N  -22.231  -3.505  -22.642  -2.438  -2.280   2.197  O3   YSG  30  
YSG  O4   O4   O   0  1  N  N  N  -26.624  -4.654  -21.566  -6.122  -4.162   0.590  O4   YSG  31  
YSG  CL1  CL1  CL  0  0  N  N  N  -24.351  -1.522  -31.298   3.817  -2.264  -3.027  CL1  YSG  32  
YSG  H12  H1   H   0  1  N  N  N  -24.303  -3.742  -21.269  -4.328  -3.857   2.198  H12  YSG  33  
YSG  H1   H2   H   0  1  N  N  N  -23.387  -2.534  -28.710   1.258  -1.278  -2.271  H1   YSG  34  
YSG  H2   H3   H   0  1  N  N  N  -22.904  -3.352  -32.875   5.249  -1.292  -0.769  H2   YSG  35  
YSG  H3   H4   H   0  1  N  N  N  -20.105  -6.734  -31.757   6.432   0.083   0.271  H3   YSG  36  
YSG  H4   H5   H   0  1  N  N  N  -19.313  -5.166  -32.135   6.103  -1.439   1.133  H4   YSG  37  
YSG  H8   H6   H   0  1  N  N  N  -18.773  -5.710  -35.686   8.414  -1.402   2.082  H8   YSG  38  
YSG  H7   H7   H   0  1  N  N  N  -19.914  -4.596  -34.859   8.743   0.120   1.219  H7   YSG  39  
YSG  H9   H8   H   0  1  N  N  N  -18.252  -4.818  -34.217   8.985   0.025   2.980  H9   YSG  40  
YSG  H10  H9   H   0  1  N  N  N  -20.833  -5.733  -29.988   2.154   0.634   1.458  H10  YSG  41  
YSG  H11  H10  H   0  1  N  N  N  -23.815  -4.170  -27.069  -0.594  -1.900  -0.090  H11  YSG  42  
YSG  H13  H11  H   0  1  N  N  N  -25.018  -5.516  -25.658  -4.266  -0.937  -1.627  H13  YSG  43  
YSG  H15  H12  H   0  1  N  N  N  -20.957  -5.017  -24.009  -3.538   1.205   0.091  H15  YSG  44  
YSG  H16  H13  H   0  1  N  N  N  -19.074  -7.232  -25.076  -2.253   3.257  -2.290  H16  YSG  45  
YSG  H17  H14  H   0  1  N  N  N  -16.719  -7.451  -24.315  -2.857   5.666  -2.239  H17  YSG  46  
YSG  H18  H15  H   0  1  N  N  N  -15.240  -5.467  -24.308  -2.810   6.875  -0.096  H18  YSG  47  
YSG  H19  H16  H   0  1  N  N  N  -18.345  -3.082  -25.805  -1.613   3.462   1.938  H19  YSG  48  
YSG  H5   H17  H   0  1  N  N  N  -20.436  -6.967  -34.332   6.877   1.212   2.434  H5   YSG  49  
YSG  H6   H18  H   0  1  N  N  N  -18.773  -7.190  -33.689   6.548  -0.310   3.296  H6   YSG  50  
YSG  H14  H19  H   0  1  N  N  N  -26.713  -5.518  -23.986  -5.930  -2.609  -1.255  H14  YSG  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YSG  C10  C9   SING  N  N   1  
YSG  C9   C8   SING  N  N   2  
YSG  O2   C8   SING  N  N   3  
YSG  O2   C7   SING  N  N   4  
YSG  C6   C7   DOUB  Y  N   5  
YSG  C6   C5   SING  Y  N   6  
YSG  C7   C11  SING  Y  N   7  
YSG  CL1  C5   SING  N  N   8  
YSG  C5   C4   DOUB  Y  N   9  
YSG  C11  C3   DOUB  Y  N  10  
YSG  C4   C3   SING  Y  N  11  
YSG  C3   C2   SING  N  N  12  
YSG  O1   C1   DOUB  N  N  13  
YSG  C2   C1   SING  N  N  14  
YSG  C2   C12  DOUB  N  N  15  
YSG  C1   N3   SING  N  N  16  
YSG  C12  C13  SING  N  N  17  
YSG  N3   C19  SING  N  N  18  
YSG  N3   C18  SING  N  N  19  
YSG  C19  C23  DOUB  Y  N  20  
YSG  C19  C20  SING  Y  N  21  
YSG  C23  N4   SING  Y  N  22  
YSG  C13  C18  DOUB  N  N  23  
YSG  C13  C14  SING  N  N  24  
YSG  C20  C21  DOUB  Y  N  25  
YSG  N4   C22  DOUB  Y  N  26  
YSG  C16  C14  DOUB  N  N  27  
YSG  C16  N2   SING  N  N  28  
YSG  C22  C21  SING  Y  N  29  
YSG  C14  C15  SING  N  N  30  
YSG  N2   C17  SING  N  N  31  
YSG  C15  O3   DOUB  N  N  32  
YSG  C15  N1   SING  N  N  33  
YSG  C17  N1   SING  N  N  34  
YSG  C17  O4   DOUB  N  N  35  
YSG  N1   H12  SING  N  N  36  
YSG  C4   H1   SING  N  N  37  
YSG  C6   H2   SING  N  N  38  
YSG  C8   H3   SING  N  N  39  
YSG  C8   H4   SING  N  N  40  
YSG  C10  H8   SING  N  N  41  
YSG  C10  H7   SING  N  N  42  
YSG  C10  H9   SING  N  N  43  
YSG  C11  H10  SING  N  N  44  
YSG  C12  H11  SING  N  N  45  
YSG  C16  H13  SING  N  N  46  
YSG  C18  H15  SING  N  N  47  
YSG  C20  H16  SING  N  N  48  
YSG  C21  H17  SING  N  N  49  
YSG  C22  H18  SING  N  N  50  
YSG  C23  H19  SING  N  N  51  
YSG  C9   H5   SING  N  N  52  
YSG  C9   H6   SING  N  N  53  
YSG  N2   H14  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YSG  SMILES            ACDLabs               12.01  "O=C1NC=C(C2=CN(c3cnccc3)C(=O)C(=C2)c2cc(OCCC)cc(Cl)c2)C(=O)N1"  
YSG  InChI             InChI                 1.03   "InChI=1S/C23H19ClN4O4/c1-2-6-32-18-8-14(7-16(24)10-18)19-9-15(20-12-26-23(31)27-21(20)29)13-28(22(19)30)17-4-3-5-25-11-17/h3-5,7-13H,2,6H2,1H3,(H2,26,27,29,31)"  
YSG  InChIKey          InChI                 1.03   GJCBTWHGKCNYAB-UHFFFAOYSA-N  
YSG  SMILES_CANONICAL  CACTVS                3.385  "CCCOc1cc(Cl)cc(c1)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O"  
YSG  SMILES            CACTVS                3.385  "CCCOc1cc(Cl)cc(c1)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O"  
YSG  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCOc1cc(cc(c1)Cl)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O"  
YSG  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCOc1cc(cc(c1)Cl)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YSG  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-[3-(3-chloro-5-propoxyphenyl)-2-oxo-2H-[1,3'-bipyridin]-5-yl]pyrimidine-2,4(1H,3H)-dione"  
YSG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-[5-(3-chloranyl-5-propoxy-phenyl)-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YSG  "Create component"  2021-03-30  RCSB  
YSG  "Initial release"   2021-06-30  RCSB  
##
