data_Y7G
# 
_chem_comp.id                                    Y7G 
_chem_comp.name                                  "(1S,2S)-2-((S)-2-(((((1R,2S,4S)-bicyclo[2.2.1]heptan-2-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H37 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-02-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        503.609 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y7G 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LKS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y7G C02 C1  C 0 1 N N N N N N 10.962 23.982 26.124 2.728  -0.441 0.002  C02 Y7G 1  
Y7G C04 C2  C 0 1 N N S N N N 12.149 22.160 27.285 0.350  0.029  0.248  C04 Y7G 2  
Y7G C05 C3  C 0 1 N N N N N N 13.269 21.980 28.280 0.293  1.339  1.037  C05 Y7G 3  
Y7G C06 C4  C 0 1 N N N N N N 14.649 22.300 27.754 1.438  1.373  2.052  C06 Y7G 4  
Y7G C07 C5  C 0 1 N N N N N N 15.058 21.345 26.654 1.457  2.732  2.754  C07 Y7G 5  
Y7G C08 C6  C 0 1 N N N N N N 15.679 22.278 28.912 1.232  0.267  3.089  C08 Y7G 6  
Y7G C09 C7  C 0 1 N N N N N N 10.856 21.518 27.785 -0.846 -0.059 -0.665 C09 Y7G 7  
Y7G C11 C8  C 0 1 N N S N N N 8.997  19.829 27.634 -3.253 -0.129 -1.036 C11 Y7G 8  
Y7G C12 C9  C 0 1 N N N N N N 7.977  19.699 26.438 -4.462 -0.634 -0.245 C12 Y7G 9  
Y7G C13 C10 C 0 1 N N S N N N 7.567  21.051 25.868 -4.186 -2.052 0.258  C13 Y7G 10 
Y7G C14 C11 C 0 1 N N N N N N 6.573  20.974 24.712 -5.361 -2.568 1.059  C14 Y7G 11 
Y7G C16 C12 C 0 1 N N N N N N 5.729  22.669 26.136 -4.738 -4.306 -0.350 C16 Y7G 12 
Y7G C17 C13 C 0 1 N N N N N N 6.841  21.956 26.875 -4.077 -3.036 -0.930 C17 Y7G 13 
Y7G C19 C14 C 0 1 N N S N N N 9.238  18.443 28.267 -3.561 1.256  -1.609 C19 Y7G 14 
Y7G C23 C15 C 0 1 N N N N N N 9.790  25.785 25.243 5.056  -0.959 -0.073 C23 Y7G 15 
Y7G C24 C16 C 0 1 N N S N N N 10.056 27.333 25.428 6.225  -0.932 -1.060 C24 Y7G 16 
Y7G C25 C17 C 0 1 N N R N N N 8.843  28.243 25.373 7.490  -1.584 -0.422 C25 Y7G 17 
Y7G C26 C18 C 0 1 N N N N N N 8.008  27.902 24.134 7.598  -0.930 0.989  C26 Y7G 18 
Y7G C27 C19 C 0 1 N N N N N N 8.913  28.183 23.008 8.011  0.533  0.711  C27 Y7G 19 
Y7G C28 C20 C 0 1 N N S N N N 10.113 28.886 23.633 8.115  0.625  -0.842 C28 Y7G 20 
Y7G C29 C21 C 0 1 N N N N N N 9.531  29.544 24.896 8.627  -0.834 -1.200 C29 Y7G 21 
Y7G C30 C22 C 0 1 N N N N N N 10.974 27.809 24.302 6.644  0.526  -1.359 C30 Y7G 22 
Y7G N03 N1  N 0 1 N N N N N N 11.929 23.588 26.993 1.577  -0.008 -0.550 N03 Y7G 23 
Y7G N10 N2  N 0 1 N N N N N N 10.253 20.441 27.158 -2.091 -0.043 -0.148 N10 Y7G 24 
Y7G N15 N3  N 0 1 N N N N N N 5.558  21.895 24.899 -5.651 -3.829 0.695  N15 Y7G 25 
Y7G O01 O1  O 0 1 N N N N N N 10.243 23.266 25.433 2.746  -0.802 1.163  O01 Y7G 26 
Y7G O18 O2  O 0 1 N N N N N N 6.700  20.200 23.777 -5.954 -1.936 1.907  O18 Y7G 27 
Y7G O20 O3  O 0 1 N N N N N N 7.985  17.955 28.749 -4.762 1.196  -2.381 O20 Y7G 28 
Y7G O21 O4  O 0 1 N N N N N N 10.330 21.971 28.795 -0.688 -0.144 -1.864 O21 Y7G 29 
Y7G O22 O5  O 0 1 N N N N N N 10.776 25.332 26.017 3.855  -0.480 -0.733 O22 Y7G 30 
Y7G H1  H1  H 0 1 N N N N N N 12.437 21.654 26.352 0.341  -0.812 0.941  H1  Y7G 31 
Y7G H2  H2  H 0 1 N N N N N N 13.071 22.637 29.139 0.391  2.181  0.351  H2  Y7G 32 
Y7G H3  H3  H 0 1 N N N N N N 13.265 20.931 28.612 -0.660 1.407  1.561  H3  Y7G 33 
Y7G H4  H4  H 0 1 N N N N N N 14.632 23.318 27.338 2.385  1.216  1.537  H4  Y7G 34 
Y7G H5  H5  H 0 1 N N N N N N 16.065 21.607 26.296 0.510  2.889  3.269  H5  Y7G 35 
Y7G H6  H6  H 0 1 N N N N N N 15.064 20.317 27.045 2.272  2.756  3.477  H6  Y7G 36 
Y7G H7  H7  H 0 1 N N N N N N 14.343 21.417 25.822 1.604  3.520  2.015  H7  Y7G 37 
Y7G H8  H8  H 0 1 N N N N N N 15.362 22.978 29.699 1.218  -0.702 2.589  H8  Y7G 38 
Y7G H9  H9  H 0 1 N N N N N N 15.740 21.262 29.329 2.047  0.290  3.812  H9  Y7G 39 
Y7G H10 H10 H 0 1 N N N N N N 16.666 22.578 28.530 0.284  0.423  3.604  H10 Y7G 40 
Y7G H11 H11 H 0 1 N N N N N N 8.544  20.482 28.395 -3.038 -0.820 -1.851 H11 Y7G 41 
Y7G H12 H12 H 0 1 N N N N N N 7.076  19.181 26.798 -4.642 0.024  0.604  H12 Y7G 42 
Y7G H13 H13 H 0 1 N N N N N N 8.446  19.107 25.638 -5.341 -0.642 -0.891 H13 Y7G 43 
Y7G H14 H14 H 0 1 N N N N N N 8.470  21.573 25.519 -3.275 -2.073 0.856  H14 Y7G 44 
Y7G H15 H15 H 0 1 N N N N N N 6.015  23.707 25.910 -5.294 -4.831 -1.127 H15 Y7G 45 
Y7G H16 H16 H 0 1 N N N N N N 4.802  22.665 26.729 -3.981 -4.962 0.080  H16 Y7G 46 
Y7G H17 H17 H 0 1 N N N N N N 6.420  21.348 27.689 -4.630 -2.668 -1.794 H17 Y7G 47 
Y7G H18 H18 H 0 1 N N N N N N 7.545  22.691 27.293 -3.034 -3.222 -1.188 H18 Y7G 48 
Y7G H19 H19 H 0 1 N N N N N N 9.892  18.607 29.136 -2.736 1.578  -2.244 H19 Y7G 49 
Y7G S1  S1  S 0 1 N Y N N N N 9.640  17.770 27.539 -3.774 2.439  -0.250 S1  Y7G 50 
Y7G H21 H21 H 0 1 N N N N N N 8.799  25.486 25.614 4.898  -1.979 0.275  H21 Y7G 51 
Y7G H22 H22 H 0 1 N N N N N N 9.902  25.465 24.196 5.284  -0.316 0.777  H22 Y7G 52 
Y7G H23 H23 H 0 1 N N N N N N 10.569 27.480 26.390 5.956  -1.447 -1.982 H23 Y7G 53 
Y7G H24 H24 H 0 1 N N N N N N 8.276  28.334 26.311 7.527  -2.673 -0.446 H24 Y7G 54 
Y7G H25 H25 H 0 1 N N N N N N 7.110  28.535 24.081 6.634  -0.962 1.497  H25 Y7G 55 
Y7G H26 H26 H 0 1 N N N N N N 7.711  26.843 24.142 8.358  -1.435 1.585  H26 Y7G 56 
Y7G H27 H27 H 0 1 N N N N N N 8.423  28.836 22.271 7.248  1.217  1.082  H27 Y7G 57 
Y7G H28 H28 H 0 1 N N N N N N 9.224  27.248 22.519 8.975  0.753  1.169  H28 Y7G 58 
Y7G H29 H29 H 0 1 N N N N N N 10.657 29.568 22.963 8.696  1.460  -1.232 H29 Y7G 59 
Y7G H30 H30 H 0 1 N N N N N N 10.302 29.909 25.591 9.611  -1.037 -0.776 H30 Y7G 60 
Y7G H31 H31 H 0 1 N N N N N N 8.822  30.356 24.676 8.603  -1.024 -2.273 H31 Y7G 61 
Y7G H32 H32 H 0 1 N N N N N N 11.209 26.992 23.604 6.601  0.741  -2.427 H32 Y7G 62 
Y7G H33 H33 H 0 1 N N N N N N 11.909 28.232 24.699 6.000  1.210  -0.807 H33 Y7G 63 
Y7G H34 H34 H 0 1 N N N N N N 12.500 24.276 27.441 1.562  0.280  -1.477 H34 Y7G 64 
Y7G H35 H35 H 0 1 N N N N N N 10.689 20.059 26.343 -2.217 0.025  0.811  H35 Y7G 65 
Y7G H36 H36 H 0 1 N N N N N N 4.795  22.020 24.265 -6.372 -4.356 1.074  H36 Y7G 66 
Y7G H37 H37 H 0 1 N N N N N N 8.109  17.100 29.144 -5.539 0.916  -1.878 H37 Y7G 67 
Y7G O1  O6  O 0 1 N Y N N N N ?      ?      ?      -4.894 2.083  0.550  O1  Y7G 68 
Y7G O2  O7  O 0 1 N Y N N N N ?      ?      ?      -2.520 2.749  0.342  O2  Y7G 69 
Y7G O3  O8  O 0 1 N Y N N N N ?      ?      ?      -4.197 3.731  -0.934 O3  Y7G 70 
Y7G H20 H20 H 0 1 N Y N N N N ?      ?      ?      -4.350 4.466  -0.325 H20 Y7G 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y7G C27 C28 SING N N 1  
Y7G C27 C26 SING N N 2  
Y7G C28 C30 SING N N 3  
Y7G C28 C29 SING N N 4  
Y7G O18 C14 DOUB N N 5  
Y7G C26 C25 SING N N 6  
Y7G C30 C24 SING N N 7  
Y7G C14 N15 SING N N 8  
Y7G C14 C13 SING N N 9  
Y7G C29 C25 SING N N 10 
Y7G N15 C16 SING N N 11 
Y7G C23 C24 SING N N 12 
Y7G C23 O22 SING N N 13 
Y7G C25 C24 SING N N 14 
Y7G O01 C02 DOUB N N 15 
Y7G C13 C12 SING N N 16 
Y7G C13 C17 SING N N 17 
Y7G O22 C02 SING N N 18 
Y7G C02 N03 SING N N 19 
Y7G C16 C17 SING N N 20 
Y7G C12 C11 SING N N 21 
Y7G C07 C06 SING N N 22 
Y7G N03 C04 SING N N 23 
Y7G N10 C11 SING N N 24 
Y7G N10 C09 SING N N 25 
Y7G C04 C09 SING N N 26 
Y7G C04 C05 SING N N 27 
Y7G C11 C19 SING N N 28 
Y7G C06 C05 SING N N 29 
Y7G C06 C08 SING N N 30 
Y7G C09 O21 DOUB N N 31 
Y7G C19 O20 SING N N 32 
Y7G C04 H1  SING N N 33 
Y7G C05 H2  SING N N 34 
Y7G C05 H3  SING N N 35 
Y7G C06 H4  SING N N 36 
Y7G C07 H5  SING N N 37 
Y7G C07 H6  SING N N 38 
Y7G C07 H7  SING N N 39 
Y7G C08 H8  SING N N 40 
Y7G C08 H9  SING N N 41 
Y7G C08 H10 SING N N 42 
Y7G C11 H11 SING N N 43 
Y7G C12 H12 SING N N 44 
Y7G C12 H13 SING N N 45 
Y7G C13 H14 SING N N 46 
Y7G C16 H15 SING N N 47 
Y7G C16 H16 SING N N 48 
Y7G C17 H17 SING N N 49 
Y7G C17 H18 SING N N 50 
Y7G C19 H19 SING N N 51 
Y7G C19 S1  SING N N 52 
Y7G C23 H21 SING N N 53 
Y7G C23 H22 SING N N 54 
Y7G C24 H23 SING N N 55 
Y7G C25 H24 SING N N 56 
Y7G C26 H25 SING N N 57 
Y7G C26 H26 SING N N 58 
Y7G C27 H27 SING N N 59 
Y7G C27 H28 SING N N 60 
Y7G C28 H29 SING N N 61 
Y7G C29 H30 SING N N 62 
Y7G C29 H31 SING N N 63 
Y7G C30 H32 SING N N 64 
Y7G C30 H33 SING N N 65 
Y7G N03 H34 SING N N 66 
Y7G N10 H35 SING N N 67 
Y7G N15 H36 SING N N 68 
Y7G O20 H37 SING N N 69 
Y7G S1  O1  DOUB N N 70 
Y7G S1  O2  DOUB N N 71 
Y7G S1  O3  SING N N 72 
Y7G O3  H20 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y7G InChI            InChI                1.03  "InChI=1S/C22H37N3O8S/c1-12(2)7-17(25-22(29)33-11-16-9-13-3-4-14(16)8-13)20(27)24-18(21(28)34(30,31)32)10-15-5-6-23-19(15)26/h12-18,21,28H,3-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t13-,14+,15-,16+,17-,18-,21-/m0/s1" 
Y7G InChIKey         InChI                1.03  CDEICDIJDMTLMS-JBKSVKCVSA-N                                                                                                                                                                                                         
Y7G SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@H]2CC[C@@H]1C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O"                                                                                                                                   
Y7G SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CC[CH]1C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"                                                                                                                                              
Y7G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2C[C@H]3CC[C@@H]2C3"                                                                                                                                         
Y7G SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CCC2C3"                                                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           Y7G 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-[[(2~{S})-2-[[(1~{R},2~{S},4~{S})-2-bicyclo[2.2.1]heptanyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y7G "Create component" 2021-02-09 RCSB 
Y7G "Modify name"      2021-02-09 RCSB 
Y7G "Initial release"  2021-02-17 RCSB 
Y7G "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Y7G 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
