data_W9G
#

_chem_comp.id                                   W9G
_chem_comp.name                                 "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(9-methoxynonyl)amino]cyclohexane-1,2,3,4-tetrol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H35 N O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-02
_chem_comp.pdbx_modified_date                   2021-09-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       349.463
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    W9G
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7K9N
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W9G  N1   N1   N  0  1  N  N  N   7.340  24.475  16.909    2.136   0.121  -0.841  N1   W9G   1  
W9G  C4   C1   C  0  1  N  N  N   8.372  25.942  15.087    4.435   0.338  -1.657  C4   W9G   2  
W9G  C5   C2   C  0  1  N  N  S   7.421  25.785  16.266    3.260  -0.616  -1.433  C5   W9G   3  
W9G  C6   C3   C  0  1  N  N  N   8.367  23.540  16.447    0.858  -0.536  -1.144  C6   W9G   4  
W9G  C7   C4   C  0  1  N  N  N   8.023  22.100  16.844   -0.286   0.259  -0.512  C7   W9G   5  
W9G  C8   C5   C  0  1  N  N  N   9.258  21.197  16.925   -1.618  -0.425  -0.827  C8   W9G   6  
W9G  C10  C6   C  0  1  N  N  N  10.523  19.261  15.833   -4.094  -0.314  -0.510  C10  W9G   7  
W9G  C13  C7   C  0  1  N  N  N  13.755  19.127  18.035   -7.714   0.592   0.439  C13  W9G   8  
W9G  C15  C8   C  0  1  N  N  N  16.662  17.836  18.052  -11.409   0.093   0.479  C15  W9G   9  
W9G  C17  C9   C  0  1  N  N  R   5.368  26.331  15.061    4.121  -1.140   0.853  C17  W9G  10  
W9G  C1   C10  C  0  1  N  N  S   6.203  26.470  13.771    5.296  -0.185   0.629  C1   W9G  11  
W9G  C11  C11  C  0  1  N  N  N  11.346  19.316  17.129   -5.238   0.481   0.122  C11  W9G  12  
W9G  C12  C12  C  0  1  N  N  N  12.736  18.678  16.985   -6.570  -0.203  -0.193  C12  W9G  13  
W9G  C14  C13  C  0  1  N  N  N  15.108  19.477  17.416   -9.045  -0.093   0.124  C14  W9G  14  
W9G  C16  C14  C  0  1  N  N  S   6.197  26.705  16.302    3.689  -1.739  -0.487  C16  W9G  15  
W9G  C2   C15  C  0  1  N  N  S   7.539  25.686  13.831    4.868   0.938  -0.318  C2   W9G  16  
W9G  C3   C16  C  0  1  N  N  N   8.388  25.972  12.585    6.042   1.892  -0.542  C3   W9G  17  
W9G  C9   C17  C  0  1  N  N  N   9.227  20.077  15.886   -2.762   0.370  -0.195  C9   W9G  18  
W9G  O1   O1   O  0  1  N  N  N   5.435  25.909  12.731    5.700   0.375   1.880  O1   W9G  19  
W9G  O2   O2   O  0  1  N  N  N   8.641  27.335  12.487    6.521   2.362   0.720  O2   W9G  20  
W9G  O3   O3   O  0  1  N  N  N   7.238  24.314  13.836    3.774   1.655   0.258  O3   W9G  21  
W9G  O4   O4   O  0  1  N  N  N  16.113  19.096  18.316  -10.114   0.650   0.714  O4   W9G  22  
W9G  O5   O5   O  0  1  N  N  N   5.445  26.582  17.488    2.592  -2.631  -0.277  O5   W9G  23  
W9G  O6   O6   O  0  1  N  N  N   4.160  27.068  14.995    4.522  -2.189   1.737  O6   W9G  24  
W9G  H1   H1   H  0  1  N  N  N   7.444  24.599  17.896    2.260   0.231   0.154  H1   W9G  25  
W9G  H3   H3   H  0  1  N  N  N   9.191  25.211  15.157    5.269  -0.209  -2.097  H3   W9G  26  
W9G  H4   H4   H  0  1  N  N  N   8.790  26.959  15.067    4.130   1.138  -2.332  H4   W9G  27  
W9G  H5   H5   H  0  1  N  N  N   8.026  26.302  17.025    2.952  -1.043  -2.388  H5   W9G  28  
W9G  H6   H6   H  0  1  N  N  N   9.332  23.816  16.897    0.718  -0.578  -2.224  H6   W9G  29  
W9G  H7   H7   H  0  1  N  N  N   8.442  23.602  15.351    0.864  -1.548  -0.738  H7   W9G  30  
W9G  H8   H8   H  0  1  N  N  N   7.532  22.114  17.828   -0.146   0.302   0.568  H8   W9G  31  
W9G  H9   H9   H  0  1  N  N  N   7.332  21.684  16.096   -0.293   1.271  -0.917  H9   W9G  32  
W9G  H10  H10  H  0  1  N  N  N   9.302  20.748  17.928   -1.758  -0.468  -1.907  H10  W9G  33  
W9G  H11  H11  H  0  1  N  N  N  10.156  21.810  16.758   -1.611  -1.437  -0.421  H11  W9G  34  
W9G  H12  H12  H  0  1  N  N  N  10.263  18.211  15.632   -4.087  -1.326  -0.104  H12  W9G  35  
W9G  H13  H13  H  0  1  N  N  N  11.143  19.649  15.012   -4.234  -0.357  -1.590  H13  W9G  36  
W9G  H14  H14  H  0  1  N  N  N  13.362  20.015  18.553   -7.574   0.635   1.519  H14  W9G  37  
W9G  H15  H15  H  0  1  N  N  N  13.898  18.313  18.761   -7.720   1.604   0.033  H15  W9G  38  
W9G  H16  H16  H  0  1  N  N  N  17.439  17.611  18.797  -12.165   0.715   0.959  H16  W9G  39  
W9G  H17  H17  H  0  1  N  N  N  15.871  17.073  18.105  -11.598   0.054  -0.594  H17  W9G  40  
W9G  H18  H18  H  0  1  N  N  N  17.107  17.834  17.046  -11.451  -0.915   0.892  H18  W9G  41  
W9G  H19  H19  H  0  1  N  N  N   5.115  25.265  15.159    3.287  -0.592   1.292  H19  W9G  42  
W9G  H20  H20  H  0  1  N  N  N   6.413  27.533  13.584    6.130  -0.733   0.190  H20  W9G  43  
W9G  H21  H21  H  0  1  N  N  N  11.472  20.369  17.420   -5.098   0.524   1.202  H21  W9G  44  
W9G  H22  H22  H  0  1  N  N  N  10.795  18.782  17.917   -5.245   1.493  -0.284  H22  W9G  45  
W9G  H23  H23  H  0  1  N  N  N  12.622  17.587  17.062   -6.563  -1.215   0.213  H23  W9G  46  
W9G  H24  H24  H  0  1  N  N  N  13.131  18.936  15.991   -6.710  -0.246  -1.273  H24  W9G  47  
W9G  H25  H25  H  0  1  N  N  N  15.234  18.936  16.466   -9.186  -0.135  -0.956  H25  W9G  48  
W9G  H26  H26  H  0  1  N  N  N  15.164  20.560  17.232   -9.039  -1.104   0.530  H26  W9G  49  
W9G  H27  H27  H  0  1  N  N  N   6.542  27.743  16.184    4.523  -2.286  -0.926  H27  W9G  50  
W9G  H28  H28  H  0  1  N  N  N   7.845  25.637  11.689    6.843   1.366  -1.062  H28  W9G  51  
W9G  H29  H29  H  0  1  N  N  N   9.341  25.429  12.661    5.713   2.739  -1.144  H29  W9G  52  
W9G  H30  H30  H  0  1  N  N  N   9.056  20.524  14.896   -2.622   0.413   0.885  H30  W9G  53  
W9G  H31  H31  H  0  1  N  N  N   8.397  19.398  16.130   -2.769   1.382  -0.600  H31  W9G  54  
W9G  H32  H32  H  0  1  N  N  N   4.606  26.368  12.666    5.985  -0.282   2.531  H32  W9G  55  
W9G  H33  H33  H  0  1  N  N  N   9.167  27.505  11.714    7.268   2.973   0.654  H33  W9G  56  
W9G  H34  H34  H  0  1  N  N  N   6.711  24.108  14.599    3.977   2.063   1.111  H34  W9G  57  
W9G  H35  H35  H  0  1  N  N  N   5.985  26.820  18.232    2.792  -3.369   0.314  H35  W9G  58  
W9G  H36  H36  H  0  1  N  N  N   3.676  26.957  15.805    3.825  -2.832   1.924  H36  W9G  59  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W9G  O2   C3   SING  N  N   1  
W9G  C3   C2   SING  N  N   2  
W9G  O1   C1   SING  N  N   3  
W9G  C1   C2   SING  N  N   4  
W9G  C1   C17  SING  N  N   5  
W9G  C2   O3   SING  N  N   6  
W9G  C2   C4   SING  N  N   7  
W9G  O6   C17  SING  N  N   8  
W9G  C17  C16  SING  N  N   9  
W9G  C4   C5   SING  N  N  10  
W9G  C10  C9   SING  N  N  11  
W9G  C10  C11  SING  N  N  12  
W9G  C9   C8   SING  N  N  13  
W9G  C5   C16  SING  N  N  14  
W9G  C5   N1   SING  N  N  15  
W9G  C16  O5   SING  N  N  16  
W9G  C6   C7   SING  N  N  17  
W9G  C6   N1   SING  N  N  18  
W9G  C7   C8   SING  N  N  19  
W9G  C12  C11  SING  N  N  20  
W9G  C12  C13  SING  N  N  21  
W9G  C14  C13  SING  N  N  22  
W9G  C14  O4   SING  N  N  23  
W9G  C15  O4   SING  N  N  24  
W9G  N1   H1   SING  N  N  25  
W9G  C4   H3   SING  N  N  26  
W9G  C4   H4   SING  N  N  27  
W9G  C5   H5   SING  N  N  28  
W9G  C6   H6   SING  N  N  29  
W9G  C6   H7   SING  N  N  30  
W9G  C7   H8   SING  N  N  31  
W9G  C7   H9   SING  N  N  32  
W9G  C8   H10  SING  N  N  33  
W9G  C8   H11  SING  N  N  34  
W9G  C10  H12  SING  N  N  35  
W9G  C10  H13  SING  N  N  36  
W9G  C13  H14  SING  N  N  37  
W9G  C13  H15  SING  N  N  38  
W9G  C15  H16  SING  N  N  39  
W9G  C15  H17  SING  N  N  40  
W9G  C15  H18  SING  N  N  41  
W9G  C17  H19  SING  N  N  42  
W9G  C1   H20  SING  N  N  43  
W9G  C11  H21  SING  N  N  44  
W9G  C11  H22  SING  N  N  45  
W9G  C12  H23  SING  N  N  46  
W9G  C12  H24  SING  N  N  47  
W9G  C14  H25  SING  N  N  48  
W9G  C14  H26  SING  N  N  49  
W9G  C16  H27  SING  N  N  50  
W9G  C3   H28  SING  N  N  51  
W9G  C3   H29  SING  N  N  52  
W9G  C9   H30  SING  N  N  53  
W9G  C9   H31  SING  N  N  54  
W9G  O1   H32  SING  N  N  55  
W9G  O2   H33  SING  N  N  56  
W9G  O3   H34  SING  N  N  57  
W9G  O5   H35  SING  N  N  58  
W9G  O6   H36  SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W9G  SMILES            ACDLabs               12.01  "N(C1CC(C(C(C1O)O)O)(O)CO)CCCCCCCCCOC"  
W9G  InChI             InChI                 1.03   "InChI=1S/C17H35NO6/c1-24-10-8-6-4-2-3-5-7-9-18-13-11-17(23,12-19)16(22)15(21)14(13)20/h13-16,18-23H,2-12H2,1H3/t13-,14-,15+,16-,17-/m0/s1"  
W9G  InChIKey          InChI                 1.03   OJZIBLPPMMRULX-KSWRQPAISA-N  
W9G  SMILES_CANONICAL  CACTVS                3.385  "COCCCCCCCCCN[C@H]1C[C@](O)(CO)[C@@H](O)[C@H](O)[C@H]1O"  
W9G  SMILES            CACTVS                3.385  "COCCCCCCCCCN[CH]1C[C](O)(CO)[CH](O)[CH](O)[CH]1O"  
W9G  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COCCCCCCCCCN[C@H]1C[C@@]([C@H]([C@@H]([C@H]1O)O)O)(CO)O"  
W9G  SMILES            "OpenEye OEToolkits"  2.0.7  "COCCCCCCCCCNC1CC(C(C(C1O)O)O)(CO)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W9G  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(9-methoxynonyl)amino]cyclohexane-1,2,3,4-tetrol"  
W9G  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{S},2~{S},3~{R},4~{S},5~{S})-1-(hydroxymethyl)-5-(9-methoxynonylamino)cyclohexane-1,2,3,4-tetrol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W9G  "Create component"  2020-10-02  RCSB  
W9G  "Initial release"   2021-09-29  RCSB  
##
