data_V9G
#

_chem_comp.id                                   V9G
_chem_comp.name                                 "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-ADENOSINE"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H32 N10 O17 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-21
_chem_comp.pdbx_modified_date                   2020-08-21
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       801.468
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V9G
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       7JHE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V9G  C1   C1   C  0  1  N  N  N  85.091  -31.660  41.804  ?  ?  ?  C1   V9G   1  
V9G  N2   N1   N  0  1  Y  N  N  84.040  -29.596  40.943  ?  ?  ?  N2   V9G   2  
V9G  C3   C2   C  0  1  N  N  N  83.302  -30.003  39.723  ?  ?  ?  C3   V9G   3  
V9G  C4   C3   C  0  1  Y  N  N  83.935  -28.179  41.243  ?  ?  ?  C4   V9G   4  
V9G  C5   C4   C  0  1  Y  N  N  85.263  -29.433  42.758  ?  ?  ?  C5   V9G   5  
V9G  C6   C5   C  0  1  N  N  N  86.333  -31.214  43.749  ?  ?  ?  C6   V9G   6  
V9G  C8   C6   C  0  1  N  N  R  86.332  -26.386  42.873  ?  ?  ?  C8   V9G   7  
V9G  C9   C7   C  0  1  N  N  S  86.060  -25.337  41.818  ?  ?  ?  C9   V9G   8  
V9G  C10  C8   C  0  1  N  N  R  84.681  -24.841  42.215  ?  ?  ?  C10  V9G   9  
V9G  C11  C9   C  0  1  N  N  N  83.938  -24.210  41.046  ?  ?  ?  C11  V9G  10  
V9G  C12  C10  C  0  1  N  N  N  86.403  -25.579  33.371  ?  ?  ?  C12  V9G  11  
V9G  C13  C11  C  0  1  N  N  R  86.538  -24.506  32.320  ?  ?  ?  C13  V9G  12  
V9G  C14  C12  C  0  1  N  N  R  87.987  -24.256  31.965  ?  ?  ?  C14  V9G  13  
V9G  C15  C13  C  0  1  N  N  R  87.941  -22.844  31.447  ?  ?  ?  C15  V9G  14  
V9G  C16  C14  C  0  1  N  N  R  86.835  -22.213  32.281  ?  ?  ?  C16  V9G  15  
V9G  C17  C15  C  0  1  Y  N  N  87.866  -22.050  34.558  ?  ?  ?  C17  V9G  16  
V9G  C18  C16  C  0  1  Y  N  N  88.530  -19.968  34.562  ?  ?  ?  C18  V9G  17  
V9G  C19  C17  C  0  1  Y  N  N  89.032  -18.687  34.792  ?  ?  ?  C19  V9G  18  
V9G  C2   C18  C  0  1  Y  N  N  84.785  -30.309  41.790  ?  ?  ?  C2   V9G  19  
V9G  C20  C19  C  0  1  Y  N  N  88.317  -18.012  32.661  ?  ?  ?  C20  V9G  20  
V9G  C21  C20  C  0  1  Y  N  N  87.921  -20.234  33.353  ?  ?  ?  C21  V9G  21  
V9G  C22  C21  C  0  1  N  N  N  88.740  -22.210  29.270  ?  ?  ?  C22  V9G  22  
V9G  C7   C22  C  0  1  N  N  R  84.954  -26.961  43.153  ?  ?  ?  C7   V9G  23  
V9G  N1   N2   N  0  1  N  N  N  87.118  -31.677  44.738  ?  ?  ?  N1   V9G  24  
V9G  N3   N3   N  0  1  Y  N  N  84.769  -28.247  42.432  ?  ?  ?  N3   V9G  25  
V9G  N4   N4   N  0  1  N  N  N  86.040  -29.894  43.745  ?  ?  ?  N4   V9G  26  
V9G  N5   N5   N  0  1  N  N  N  85.877  -32.089  42.802  ?  ?  ?  N5   V9G  27  
V9G  N6   N6   N  0  1  Y  N  N  87.512  -21.509  33.386  ?  ?  ?  N6   V9G  28  
V9G  O1   O1   O  0  1  N  N  N  84.679  -32.455  40.946  ?  ?  ?  O1   V9G  29  
V9G  O2   O2   O  0  1  N  N  N  87.038  -24.300  41.799  ?  ?  ?  O2   V9G  30  
V9G  O3   O3   O  0  1  N  N  N  83.987  -25.982  42.749  ?  ?  ?  O3   V9G  31  
V9G  O4   O4   O  0  1  N  N  N  86.866  -25.805  44.071  ?  ?  ?  O4   V9G  32  
V9G  O13  O5   O  0  1  N  N  N  87.508  -27.493  35.613  ?  ?  ?  O13  V9G  33  
V9G  P3   P1   P  0  1  N  N  N  87.190  -26.035  35.819  ?  ?  ?  P3   V9G  34  
V9G  O12  O6   O  0  1  N  N  N  88.194  -25.386  36.728  ?  ?  ?  O12  V9G  35  
V9G  O14  O7   O  0  1  N  N  N  87.275  -25.250  34.435  ?  ?  ?  O14  V9G  36  
V9G  O16  O8   O  0  1  N  N  N  88.480  -25.204  31.025  ?  ?  ?  O16  V9G  37  
V9G  O17  O9   O  0  1  N  N  N  87.657  -22.768  30.042  ?  ?  ?  O17  V9G  38  
V9G  N7   N7   N  0  1  Y  N  N  88.491  -21.106  35.291  ?  ?  ?  N7   V9G  39  
V9G  N8   N8   N  0  1  N  N  N  89.635  -18.399  35.970  ?  ?  ?  N8   V9G  40  
V9G  N9   N9   N  0  1  Y  N  N  88.914  -17.730  33.831  ?  ?  ?  N9   V9G  41  
V9G  N10  N10  N  0  1  Y  N  N  87.826  -19.243  32.424  ?  ?  ?  N10  V9G  42  
V9G  O15  O10  O  0  1  N  N  N  86.021  -23.259  32.796  ?  ?  ?  O15  V9G  43  
V9G  O11  O11  O  0  1  N  N  N  85.685  -25.916  36.362  ?  ?  ?  O11  V9G  44  
V9G  P2   P2   P  0  1  N  N  N  85.068  -26.858  37.501  ?  ?  ?  P2   V9G  45  
V9G  O9   O12  O  0  1  N  N  N  85.931  -26.753  38.718  ?  ?  ?  O9   V9G  46  
V9G  O10  O13  O  0  1  N  N  N  84.935  -28.299  37.064  ?  ?  ?  O10  V9G  47  
V9G  O7   O14  O  0  1  N  N  N  83.608  -26.254  37.782  ?  ?  ?  O7   V9G  48  
V9G  P1   P3   P  0  1  N  N  N  83.362  -24.867  38.567  ?  ?  ?  P1   V9G  49  
V9G  O5   O15  O  0  1  N  N  N  84.387  -23.815  38.247  ?  ?  ?  O5   V9G  50  
V9G  O6   O16  O  0  1  N  N  N  81.962  -24.392  38.257  ?  ?  ?  O6   V9G  51  
V9G  O8   O17  O  0  1  N  N  N  83.496  -25.209  40.130  ?  ?  ?  O8   V9G  52  
V9G  H1   H1   H  0  1  N  N  N  83.428  -31.084  39.561  ?  ?  ?  H1   V9G  53  
V9G  H2   H2   H  0  1  N  N  N  82.234  -29.773  39.847  ?  ?  ?  H2   V9G  54  
V9G  H3   H3   H  0  1  N  N  N  83.697  -29.454  38.855  ?  ?  ?  H3   V9G  55  
V9G  H4   H4   H  0  1  N  N  N  83.420  -27.364  40.756  ?  ?  ?  H4   V9G  56  
V9G  H5   H5   H  0  1  N  N  N  86.996  -27.167  42.473  ?  ?  ?  H5   V9G  57  
V9G  H6   H6   H  0  1  N  N  N  85.998  -25.823  40.833  ?  ?  ?  H6   V9G  58  
V9G  H7   H7   H  0  1  N  N  N  84.798  -24.081  43.002  ?  ?  ?  H7   V9G  59  
V9G  H8   H8   H  0  1  N  N  N  84.611  -23.514  40.524  ?  ?  ?  H8   V9G  60  
V9G  H9   H9   H  0  1  N  N  N  83.066  -23.659  41.428  ?  ?  ?  H9   V9G  61  
V9G  H10  H10  H  0  1  N  N  N  85.366  -25.619  33.735  ?  ?  ?  H10  V9G  62  
V9G  H11  H11  H  0  1  N  N  N  86.680  -26.556  32.947  ?  ?  ?  H11  V9G  63  
V9G  H12  H12  H  0  1  N  N  N  85.997  -24.819  31.415  ?  ?  ?  H12  V9G  64  
V9G  H13  H13  H  0  1  N  N  N  88.590  -24.283  32.884  ?  ?  ?  H13  V9G  65  
V9G  H14  H14  H  0  1  N  N  N  88.893  -22.342  31.672  ?  ?  ?  H14  V9G  66  
V9G  H15  H15  H  0  1  N  N  N  86.252  -21.510  31.668  ?  ?  ?  H15  V9G  67  
V9G  H16  H16  H  0  1  N  N  N  87.682  -23.069  34.865  ?  ?  ?  H16  V9G  68  
V9G  H17  H17  H  0  1  N  N  N  88.230  -17.246  31.905  ?  ?  ?  H17  V9G  69  
V9G  H18  H18  H  0  1  N  N  N  88.457  -22.181  28.207  ?  ?  ?  H18  V9G  70  
V9G  H19  H19  H  0  1  N  N  N  88.952  -21.189  29.621  ?  ?  ?  H19  V9G  71  
V9G  H20  H20  H  0  1  N  N  N  89.637  -22.834  29.393  ?  ?  ?  H20  V9G  72  
V9G  H21  H21  H  0  1  N  N  N  84.865  -27.143  44.234  ?  ?  ?  H21  V9G  73  
V9G  H22  H22  H  0  1  N  N  N  87.463  -31.051  45.437  ?  ?  ?  H22  V9G  74  
V9G  H23  H23  H  0  1  N  N  N  87.356  -32.647  44.774  ?  ?  ?  H23  V9G  75  
V9G  H24  H24  H  0  1  N  N  N  86.131  -33.055  42.854  ?  ?  ?  H24  V9G  76  
V9G  H25  H25  H  0  1  N  N  N  87.879  -24.662  41.546  ?  ?  ?  H25  V9G  77  
V9G  H26  H26  H  0  1  N  N  N  87.025  -26.489  44.711  ?  ?  ?  H26  V9G  78  
V9G  H27  H27  H  0  1  N  N  N  88.840  -26.029  36.998  ?  ?  ?  H27  V9G  79  
V9G  H28  H28  H  0  1  N  N  N  88.481  -26.069  31.418  ?  ?  ?  H28  V9G  80  
V9G  H29  H29  H  0  1  N  N  N  89.933  -17.445  35.968  ?  ?  ?  H29  V9G  81  
V9G  H30  H30  H  0  1  N  N  N  88.989  -18.544  36.719  ?  ?  ?  H30  V9G  82  
V9G  H31  H31  H  0  1  N  N  N  86.225  -27.619  38.974  ?  ?  ?  H31  V9G  83  
V9G  H32  H32  H  0  1  N  N  N  81.996  -23.507  37.914  ?  ?  ?  H32  V9G  84  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V9G  C22  O17  SING  N  N   1  
V9G  O17  C15  SING  N  N   2  
V9G  O16  C14  SING  N  N   3  
V9G  C15  C14  SING  N  N   4  
V9G  C15  C16  SING  N  N   5  
V9G  C14  C13  SING  N  N   6  
V9G  C16  O15  SING  N  N   7  
V9G  C16  N6   SING  N  N   8  
V9G  C13  O15  SING  N  N   9  
V9G  C13  C12  SING  N  N  10  
V9G  N10  C20  DOUB  Y  N  11  
V9G  N10  C21  SING  Y  N  12  
V9G  C20  N9   SING  Y  N  13  
V9G  C21  N6   SING  Y  N  14  
V9G  C21  C18  DOUB  Y  N  15  
V9G  C12  O14  SING  N  N  16  
V9G  N6   C17  SING  Y  N  17  
V9G  N9   C19  DOUB  Y  N  18  
V9G  O14  P3   SING  N  N  19  
V9G  C17  N7   DOUB  Y  N  20  
V9G  C18  C19  SING  Y  N  21  
V9G  C18  N7   SING  Y  N  22  
V9G  C19  N8   SING  N  N  23  
V9G  O13  P3   DOUB  N  N  24  
V9G  P3   O11  SING  N  N  25  
V9G  P3   O12  SING  N  N  26  
V9G  O11  P2   SING  N  N  27  
V9G  O10  P2   DOUB  N  N  28  
V9G  P2   O7   SING  N  N  29  
V9G  P2   O9   SING  N  N  30  
V9G  O7   P1   SING  N  N  31  
V9G  O5   P1   DOUB  N  N  32  
V9G  O6   P1   SING  N  N  33  
V9G  P1   O8   SING  N  N  34  
V9G  C3   N2   SING  N  N  35  
V9G  O8   C11  SING  N  N  36  
V9G  N2   C4   SING  Y  N  37  
V9G  N2   C2   SING  Y  N  38  
V9G  O1   C1   DOUB  N  N  39  
V9G  C11  C10  SING  N  N  40  
V9G  C4   N3   DOUB  Y  N  41  
V9G  C2   C1   SING  N  N  42  
V9G  C2   C5   DOUB  Y  N  43  
V9G  O2   C9   SING  N  N  44  
V9G  C1   N5   SING  N  N  45  
V9G  C9   C10  SING  N  N  46  
V9G  C9   C8   SING  N  N  47  
V9G  C10  O3   SING  N  N  48  
V9G  N3   C5   SING  Y  N  49  
V9G  N3   C7   SING  N  N  50  
V9G  O3   C7   SING  N  N  51  
V9G  C5   N4   SING  N  N  52  
V9G  N5   C6   SING  N  N  53  
V9G  C8   C7   SING  N  N  54  
V9G  C8   O4   SING  N  N  55  
V9G  N4   C6   DOUB  N  N  56  
V9G  C6   N1   SING  N  N  57  
V9G  C3   H1   SING  N  N  58  
V9G  C3   H2   SING  N  N  59  
V9G  C3   H3   SING  N  N  60  
V9G  C4   H4   SING  N  N  61  
V9G  C8   H5   SING  N  N  62  
V9G  C9   H6   SING  N  N  63  
V9G  C10  H7   SING  N  N  64  
V9G  C11  H8   SING  N  N  65  
V9G  C11  H9   SING  N  N  66  
V9G  C12  H10  SING  N  N  67  
V9G  C12  H11  SING  N  N  68  
V9G  C13  H12  SING  N  N  69  
V9G  C14  H13  SING  N  N  70  
V9G  C15  H14  SING  N  N  71  
V9G  C16  H15  SING  N  N  72  
V9G  C17  H16  SING  N  N  73  
V9G  C20  H17  SING  N  N  74  
V9G  C22  H18  SING  N  N  75  
V9G  C22  H19  SING  N  N  76  
V9G  C22  H20  SING  N  N  77  
V9G  C7   H21  SING  N  N  78  
V9G  N1   H22  SING  N  N  79  
V9G  N1   H23  SING  N  N  80  
V9G  N5   H24  SING  N  N  81  
V9G  O2   H25  SING  N  N  82  
V9G  O4   H26  SING  N  N  83  
V9G  O12  H27  SING  N  N  84  
V9G  O16  H28  SING  N  N  85  
V9G  N8   H29  SING  N  N  86  
V9G  N8   H30  SING  N  N  87  
V9G  O9   H31  SING  N  N  88  
V9G  O6   H32  SING  N  N  89  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V9G  InChI             InChI                 1.03   "InChI=1S/C22H32N10O17P3/c1-30-7-32(18-11(30)19(36)29-22(24)28-18)20-14(35)12(33)8(46-20)3-44-50(37,38)48-52(41,42)49-51(39,40)45-4-9-13(34)15(43-2)21(47-9)31-6-27-10-16(23)25-5-26-17(10)31/h5-9,12-15,20-21,33-35H,3-4H2,1-2H3,(H,37,38)(H,39,40)(H,41,42)(H2,23,25,26)(H3,24,28,29,36)/t8-,9-,12-,13-,14-,15-,20-,21-/m1/s1"  
V9G  InChIKey          InChI                 1.03   WZAAWBDISKLAIE-NAGRZYTCSA-N  
V9G  SMILES_CANONICAL  CACTVS                3.385  "CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)[n]3cn(C)c4C(=O)NC(=Nc34)N)O[C@H]1n5cnc6c(N)ncnc56"  
V9G  SMILES            CACTVS                3.385  "CO[CH]1[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)[n]3cn(C)c4C(=O)NC(=Nc34)N)O[CH]1n5cnc6c(N)ncnc56"  
V9G  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN1C=[N](C2=C1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)OC)O)O)O"  
V9G  SMILES            "OpenEye OEToolkits"  2.0.7  "CN1C=[N](C2=C1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)OC)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          V9G
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     V9G
_pdbx_chem_comp_synonyms.name        "[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V9G  "Create component"  2020-07-21  RCSB  
V9G  "Initial release"   2020-08-26  RCSB  
##
