data_V0G
# 
_chem_comp.id                                    V0G 
_chem_comp.name                                  "N-(3-{[5-chloro-4-(1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)-4-{[4-(dimethylamino)butanoyl]amino}benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H30 Cl N7 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-06-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        568.069 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V0G 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6XD3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V0G C13  C1  C  0 1 Y N N N N N 119.415 96.922 78.951 3.501   1.784  0.614  C13  V0G 1  
V0G C15  C2  C  0 1 Y N N N N N 120.455 96.860 76.784 5.762   1.759  -0.185 C15  V0G 2  
V0G C17  C3  C  0 1 N N N N N N 122.005 98.524 75.716 7.179   -0.141 -0.033 C17  V0G 3  
V0G C20  C4  C  0 1 N N N N N N 124.969 97.265 75.804 9.835   -2.869 0.368  C20  V0G 4  
V0G C22  C5  C  0 1 N N N N N N 127.355 97.175 75.908 9.182   -4.938 -0.708 C22  V0G 5  
V0G C26  C6  C  0 1 Y N N N N N 118.204 96.040 77.070 4.241   3.423  -1.003 C26  V0G 6  
V0G C28  C7  C  0 1 Y N N N N N 115.314 94.820 81.566 -0.589  4.848  0.289  C28  V0G 7  
V0G C02  C8  C  0 1 Y N N N N N 108.218 92.213 81.756 -3.643  -1.519 -0.706 C02  V0G 8  
V0G C03  C9  C  0 1 Y N N N N N 108.236 92.449 80.391 -2.619  -0.618 -0.935 C03  V0G 9  
V0G C05  C10 C  0 1 Y N N N N N 110.363 93.296 80.573 -3.793  0.997  0.220  C05  V0G 10 
V0G C07  C11 C  0 1 Y N N N N N 112.811 94.205 80.505 -2.763  3.150  0.559  C07  V0G 11 
V0G C08  C12 C  0 1 Y N N N N N 113.914 94.366 79.672 -1.475  2.641  0.645  C08  V0G 12 
V0G C09  C13 C  0 1 Y N N N N N 115.162 94.668 80.197 -0.386  3.490  0.504  C09  V0G 13 
V0G C11  C14 C  0 1 N N N N N N 117.061 96.088 79.343 1.886   3.495  -0.200 C11  V0G 14 
V0G C12  C15 C  0 1 Y N N N N N 118.268 96.347 78.420 3.232   2.890  -0.196 C12  V0G 15 
V0G C14  C16 C  0 1 Y N N N N N 120.511 97.175 78.133 4.759   1.226  0.619  C14  V0G 16 
V0G C18  C17 C  0 1 N N N N N N 123.199 98.873 74.810 8.555   -0.741 0.090  C18  V0G 17 
V0G C19  C18 C  0 1 N N N N N N 124.572 98.708 75.472 8.438   -2.259 0.243  C19  V0G 18 
V0G C23  C19 C  0 1 N N N N N N 126.291 97.412 73.790 11.017  -4.921 0.872  C23  V0G 19 
V0G C25  C20 C  0 1 Y N N N N N 119.302 96.295 76.250 5.496   2.857  -0.997 C25  V0G 20 
V0G C29  C21 C  0 1 Y N N N N N 114.217 94.668 82.404 -1.873  5.353  0.215  C29  V0G 21 
V0G C30  C22 C  0 1 Y N N N N N 112.972 94.365 81.871 -2.959  4.509  0.349  C30  V0G 22 
V0G C32  C23 C  0 1 Y N N N N N 109.329 92.556 82.508 -4.763  -1.087 0.015  C32  V0G 23 
V0G C33  C24 C  0 1 Y N N N N N 109.420 92.339 84.022 -5.888  -2.009 0.281  C33  V0G 24 
V0G C34  C25 C  0 1 Y N N N N N 108.381 92.295 84.938 -5.800  -3.281 0.748  C34  V0G 25 
V0G C36  C26 C  0 1 Y N N N N N 110.258 92.015 86.047 -7.998  -2.897 0.478  C36  V0G 26 
V0G C37  C27 C  0 1 Y N N N N N 111.250 91.815 87.040 -9.387  -2.934 0.408  C37  V0G 27 
V0G C38  C28 C  0 1 Y N N N N N 112.590 91.772 86.680 -10.084 -1.830 -0.031 C38  V0G 28 
V0G C39  C29 C  0 1 Y N N N N N 112.964 91.925 85.345 -9.414  -0.675 -0.407 C39  V0G 29 
V0G C40  C30 C  0 1 Y N N N N N 111.989 92.122 84.374 -8.039  -0.615 -0.341 C40  V0G 30 
V0G C41  C31 C  0 1 Y N N N N N 110.622 92.167 84.740 -7.321  -1.726 0.097  C41  V0G 31 
V0G N04  N1  N  0 1 Y N N N N N 109.313 92.985 79.849 -2.724  0.615  -0.464 N04  V0G 32 
V0G N06  N2  N  0 1 N N N N N N 111.517 93.887 79.893 -3.863  2.297  0.694  N06  V0G 33 
V0G N10  N3  N  0 1 N N N N N N 116.308 94.834 79.296 0.914   2.980  0.579  N10  V0G 34 
V0G N16  N4  N  0 1 N N N N N N 121.606 97.134 75.921 7.035   1.192  -0.178 N16  V0G 35 
V0G N21  N5  N  0 1 N N N N N N 126.184 96.838 75.121 9.722   -4.326 0.514  N21  V0G 36 
V0G N31  N6  N  0 1 Y N N N N N 110.359 93.083 81.873 -4.799  0.170  0.457  N31  V0G 37 
V0G N35  N7  N  0 1 Y N N N N N 108.899 92.095 86.147 -7.047  -3.816 0.866  N35  V0G 38 
V0G O24  O1  O  0 1 N N N N N N 121.395 99.391 76.238 6.200   -0.856 -0.002 O24  V0G 39 
V0G O27  O2  O  0 1 N N N N N N 116.739 96.942 80.096 1.653   4.457  -0.906 O27  V0G 40 
V0G CL01 CL1 CL 0 0 N N N N N N 106.763 91.494 82.496 -3.546  -3.146 -1.305 CL01 V0G 41 
V0G H1   H1  H  0 1 N N N N N N 119.456 97.173 80.001 2.723   1.370  1.239  H1   V0G 42 
V0G H2   H2  H  0 1 N N N N N N 124.147 96.598 75.507 10.414  -2.637 -0.526 H2   V0G 43 
V0G H3   H3  H  0 1 N N N N N N 125.131 97.187 76.889 10.336  -2.454 1.242  H3   V0G 44 
V0G H4   H4  H  0 1 N N N N N N 127.262 96.735 76.912 9.043   -6.007 -0.548 H4   V0G 45 
V0G H5   H5  H  0 1 N N N N N N 128.255 96.777 75.416 8.224   -4.479 -0.951 H5   V0G 46 
V0G H6   H6  H  0 1 N N N N N N 127.437 98.269 75.993 9.879   -4.781 -1.531 H6   V0G 47 
V0G H7   H7  H  0 1 N N N N N N 117.307 95.605 76.655 4.037   4.278  -1.631 H7   V0G 48 
V0G H8   H8  H  0 1 N N N N N N 116.283 95.056 81.980 0.258   5.510  0.184  H8   V0G 49 
V0G H9   H9  H  0 1 N N N N N N 107.382 92.198 79.780 -1.743  -0.918 -1.490 H9   V0G 50 
V0G H10  H10 H  0 1 N N N N N N 113.797 94.255 78.604 -1.320  1.586  0.812  H10  V0G 51 
V0G H11  H11 H  0 1 N N N N N N 121.405 97.616 78.548 4.969   0.373  1.248  H11  V0G 52 
V0G H12  H12 H  0 1 N N N N N N 123.095 99.921 74.493 9.134   -0.510 -0.804 H12  V0G 53 
V0G H13  H13 H  0 1 N N N N N N 123.163 98.218 73.927 9.056   -0.326 0.965  H13  V0G 54 
V0G H14  H14 H  0 1 N N N N N N 125.330 99.121 74.790 7.937   -2.674 -0.632 H14  V0G 55 
V0G H15  H15 H  0 1 N N N N N N 124.569 99.284 76.409 7.859   -2.491 1.137  H15  V0G 56 
V0G H16  H16 H  0 1 N N N N N N 127.219 97.064 73.314 11.361  -4.501 1.817  H16  V0G 57 
V0G H17  H17 H  0 1 N N N N N N 125.428 97.097 73.185 10.905  -6.001 0.974  H17  V0G 58 
V0G H18  H18 H  0 1 N N N N N N 126.306 98.509 73.864 11.745  -4.704 0.091  H18  V0G 59 
V0G H19  H19 H  0 1 N N N N N N 119.257 96.053 75.198 6.276   3.269  -1.620 H19  V0G 60 
V0G H20  H20 H  0 1 N N N N N N 114.333 94.786 83.471 -2.027  6.409  0.052  H20  V0G 61 
V0G H21  H21 H  0 1 N N N N N N 112.122 94.253 82.527 -3.961  4.906  0.282  H21  V0G 62 
V0G H22  H22 H  0 1 N N N N N N 107.331 92.404 84.710 -4.880  -3.793 0.989  H22  V0G 63 
V0G H23  H23 H  0 1 N N N N N N 110.964 91.696 88.075 -9.919  -3.829 0.698  H23  V0G 64 
V0G H24  H24 H  0 1 N N N N N N 113.346 91.620 87.436 -11.162 -1.864 -0.084 H24  V0G 65 
V0G H25  H25 H  0 1 N N N N N N 114.007 91.891 85.067 -9.973  0.183  -0.750 H25  V0G 66 
V0G H26  H26 H  0 1 N N N N N N 112.275 92.241 83.339 -7.520  0.285  -0.635 H26  V0G 67 
V0G H27  H27 H  0 1 N N N N N N 111.413 94.093 78.920 -4.674  2.616  1.120  H27  V0G 68 
V0G H28  H28 H  0 1 N N N N N N 116.569 94.105 78.663 1.116   2.255  1.191  H28  V0G 69 
V0G H29  H29 H  0 1 N N N N N N 122.107 96.388 75.483 7.818   1.756  -0.276 H29  V0G 70 
V0G H31  H31 H  0 1 N N N N N N 108.375 92.016 86.995 -7.238  -4.713 1.180  H31  V0G 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V0G C23 N21  SING N N 1  
V0G C18 C19  SING N N 2  
V0G C18 C17  SING N N 3  
V0G N21 C20  SING N N 4  
V0G N21 C22  SING N N 5  
V0G C19 C20  SING N N 6  
V0G C17 N16  SING N N 7  
V0G C17 O24  DOUB N N 8  
V0G N16 C15  SING N N 9  
V0G C25 C15  DOUB Y N 10 
V0G C25 C26  SING Y N 11 
V0G C15 C14  SING Y N 12 
V0G C26 C12  DOUB Y N 13 
V0G C14 C13  DOUB Y N 14 
V0G C12 C13  SING Y N 15 
V0G C12 C11  SING N N 16 
V0G N10 C11  SING N N 17 
V0G N10 C09  SING N N 18 
V0G C11 O27  DOUB N N 19 
V0G C08 C09  DOUB Y N 20 
V0G C08 C07  SING Y N 21 
V0G N04 C03  DOUB Y N 22 
V0G N04 C05  SING Y N 23 
V0G N06 C07  SING N N 24 
V0G N06 C05  SING N N 25 
V0G C09 C28  SING Y N 26 
V0G C03 C02  SING Y N 27 
V0G C07 C30  DOUB Y N 28 
V0G C05 N31  DOUB Y N 29 
V0G C28 C29  DOUB Y N 30 
V0G C02 CL01 SING N N 31 
V0G C02 C32  DOUB Y N 32 
V0G C30 C29  SING Y N 33 
V0G N31 C32  SING Y N 34 
V0G C32 C33  SING N N 35 
V0G C33 C41  SING Y N 36 
V0G C33 C34  DOUB Y N 37 
V0G C40 C41  DOUB Y N 38 
V0G C40 C39  SING Y N 39 
V0G C41 C36  SING Y N 40 
V0G C34 N35  SING Y N 41 
V0G C39 C38  DOUB Y N 42 
V0G C36 N35  SING Y N 43 
V0G C36 C37  DOUB Y N 44 
V0G C38 C37  SING Y N 45 
V0G C13 H1   SING N N 46 
V0G C20 H2   SING N N 47 
V0G C20 H3   SING N N 48 
V0G C22 H4   SING N N 49 
V0G C22 H5   SING N N 50 
V0G C22 H6   SING N N 51 
V0G C26 H7   SING N N 52 
V0G C28 H8   SING N N 53 
V0G C03 H9   SING N N 54 
V0G C08 H10  SING N N 55 
V0G C14 H11  SING N N 56 
V0G C18 H12  SING N N 57 
V0G C18 H13  SING N N 58 
V0G C19 H14  SING N N 59 
V0G C19 H15  SING N N 60 
V0G C23 H16  SING N N 61 
V0G C23 H17  SING N N 62 
V0G C23 H18  SING N N 63 
V0G C25 H19  SING N N 64 
V0G C29 H20  SING N N 65 
V0G C30 H21  SING N N 66 
V0G C34 H22  SING N N 67 
V0G C37 H23  SING N N 68 
V0G C38 H24  SING N N 69 
V0G C39 H25  SING N N 70 
V0G C40 H26  SING N N 71 
V0G N06 H27  SING N N 72 
V0G N10 H28  SING N N 73 
V0G N16 H29  SING N N 74 
V0G N35 H31  SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V0G SMILES           ACDLabs              12.01 "c1c(ccc(c1)NC(=O)CCCN(C)C)C(=O)Nc2cccc(c2)Nc3nc(c(Cl)cn3)c4c5c(nc4)cccc5"                                                                                                                                                         
V0G InChI            InChI                1.03  "InChI=1S/C31H30ClN7O2/c1-39(2)16-6-11-28(40)35-21-14-12-20(13-15-21)30(41)36-22-7-5-8-23(17-22)37-31-34-19-26(32)29(38-31)25-18-33-27-10-4-3-9-24(25)27/h3-5,7-10,12-15,17-19,33H,6,11,16H2,1-2H3,(H,35,40)(H,36,41)(H,34,37,38)" 
V0G InChIKey         InChI                1.03  TUERFPPIPKZNKE-UHFFFAOYSA-N                                                                                                                                                                                                        
V0G SMILES_CANONICAL CACTVS               3.385 "CN(C)CCCC(=O)Nc1ccc(cc1)C(=O)Nc2cccc(Nc3ncc(Cl)c(n3)c4c[nH]c5ccccc45)c2"                                                                                                                                                          
V0G SMILES           CACTVS               3.385 "CN(C)CCCC(=O)Nc1ccc(cc1)C(=O)Nc2cccc(Nc3ncc(Cl)c(n3)c4c[nH]c5ccccc45)c2"                                                                                                                                                          
V0G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCCC(=O)Nc1ccc(cc1)C(=O)Nc2cccc(c2)Nc3ncc(c(n3)c4c[nH]c5c4cccc5)Cl"                                                                                                                                                          
V0G SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)CCCC(=O)Nc1ccc(cc1)C(=O)Nc2cccc(c2)Nc3ncc(c(n3)c4c[nH]c5c4cccc5)Cl"                                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
V0G "SYSTEMATIC NAME" ACDLabs              12.01 "N-(3-{[5-chloro-4-(1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)-4-{[4-(dimethylamino)butanoyl]amino}benzamide"        
V0G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[3-[[5-chloranyl-4-(1~{H}-indol-3-yl)pyrimidin-2-yl]amino]phenyl]-4-[4-(dimethylamino)butanoylamino]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V0G "Create component" 2020-06-10 RCSB 
V0G "Initial release"  2020-09-09 RCSB 
V0G "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            V0G 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
