data_TDG
#

_chem_comp.id                                   TDG
_chem_comp.name                                 THIODIGALACTOSIDE
_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H22 O10 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       358.362
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TDG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4OAA
_chem_comp.pdbx_subcomponent_list               "GAL YIO"
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
TDG  C1      C1   C  0  1  N  N  S  28.341  -18.400  51.875  -1.366   0.415   0.383  GAL  1  C1    polymer  1   1  
TDG  C2      C2   C  0  1  N  N  R  28.323  -18.403  53.391  -2.579   1.223   0.853  GAL  1  C2    polymer  1   2  
TDG  C3      C3   C  0  1  N  N  S  26.917  -18.485  53.941  -3.747   0.269   1.120  GAL  1  C3    polymer  1   3  
TDG  C4      C4   C  0  1  N  N  R  26.062  -17.424  53.265  -4.039  -0.531  -0.153  GAL  1  C4    polymer  1   4  
TDG  C5      C5   C  0  1  N  N  R  26.193  -17.455  51.734  -2.771  -1.271  -0.585  GAL  1  C5    polymer  1   5  
TDG  C6      C6   C  0  1  N  N  N  25.354  -16.412  50.988  -3.038  -2.025  -1.889  GAL  1  C6    polymer  1   6  
TDG  O2      O1   O  0  1  N  N  N  29.098  -19.510  53.871  -2.249   1.923   2.055  GAL  1  O2    polymer  1   7  
TDG  O3      O2   O  0  1  N  N  N  27.045  -18.246  55.350  -4.904   1.021   1.489  GAL  1  O3    polymer  1   8  
TDG  O4      O3   O  0  1  N  N  N  26.502  -16.179  53.809  -4.449   0.360  -1.193  GAL  1  O4    polymer  1   9  
TDG  O5      O4   O  0  1  N  N  N  27.560  -17.335  51.344  -1.716  -0.329  -0.786  GAL  1  O5    polymer  1  10  
TDG  O6      O5   O  0  1  N  N  N  25.833  -16.260  49.646  -1.893  -2.808  -2.230  GAL  1  O6    polymer  1  11  
TDG  "C1'"   C7   C  0  1  N  N  S  30.333  -19.189  50.019   1.367   0.414  -0.386  YIO  2  C1    polymer  1  12  
TDG  "C2'"   C8   C  0  1  N  N  R  31.641  -18.715  49.407   2.579   1.220  -0.857  YIO  2  C2    polymer  1  13  
TDG  "C3'"   C9   C  0  1  N  N  S  32.041  -19.659  48.288   3.747   0.265  -1.120  YIO  2  C3    polymer  1  14  
TDG  "C4'"   C10  C  0  1  N  N  R  32.120  -21.085  48.818   4.039  -0.531   0.156  YIO  2  C4    polymer  1  15  
TDG  "C5'"   C11  C  0  1  N  N  R  30.818  -21.508  49.494   2.770  -1.270   0.588  YIO  2  C5    polymer  1  16  
TDG  "C6'"   C12  C  0  1  N  N  N  30.957  -22.855  50.204   3.036  -2.019   1.895  YIO  2  C6    polymer  1  17  
TDG  "O2'"   O6   O  0  1  N  N  N  31.506  -17.376  48.910   2.251   1.917  -2.060  YIO  2  O2    polymer  1  18  
TDG  "O3'"   O7   O  0  1  N  N  N  33.311  -19.270  47.753   4.905   1.016  -1.490  YIO  2  O3    polymer  1  19  
TDG  "O4'"   O8   O  0  1  N  N  N  33.194  -21.180  49.762   4.448   0.363   1.193  YIO  2  O4    polymer  1  20  
TDG  "O5'"   O9   O  0  1  N  N  N  30.409  -20.543  50.464   1.715  -0.327   0.786  YIO  2  O5    polymer  1  21  
TDG  "O6'"   O10  O  0  1  N  N  N  30.987  -23.919  49.247   1.891  -2.802   2.238  YIO  2  O6    polymer  1  22  
TDG  S1      S1   S  0  1  N  N  N  30.027  -18.189  51.430   0.000   1.543  -0.003  YIO  2  S1    polymer  1  23  
TDG  H1      H1   H  0  1  N  N  N  28.016  -19.377  51.486  -1.059  -0.271   1.172  GAL  1  H1    polymer  1  24  
TDG  H2      H2   H  0  1  N  N  N  28.776  -17.464  53.742  -2.861   1.939   0.081  GAL  1  H2    polymer  1  25  
TDG  H3      H4   H  0  1  N  N  N  26.496  -19.482  53.746  -3.483  -0.414   1.928  GAL  1  H3    polymer  1  26  
TDG  H4      H6   H  0  1  N  N  N  25.009  -17.598  53.529  -4.834  -1.251   0.043  GAL  1  H4    polymer  1  27  
TDG  H5      H8   H  0  1  N  N  N  25.833  -18.442  51.407  -2.482  -1.980   0.192  GAL  1  H5    polymer  1  28  
TDG  H61     H10  H  0  1  N  N  N  24.304  -16.740  50.964  -3.240  -1.310  -2.687  GAL  1  H61   polymer  1  29  
TDG  H62     H9   H  0  1  N  N  N  25.425  -15.447  51.511  -3.901  -2.679  -1.760  GAL  1  H62   polymer  1  30  
TDG  HO2     H3   H  0  1  N  N  N  29.089  -19.515  54.821  -1.513   2.542   1.961  GAL  1  HO2   polymer  1  31  
TDG  HO3     H5   H  0  1  N  N  N  27.583  -18.925  55.739  -4.787   1.558   2.285  GAL  1  HO3   polymer  1  32  
TDG  HO4     H7   H  0  1  N  N  N  26.407  -16.195  54.754  -5.246   0.867  -0.985  GAL  1  HO4   polymer  1  33  
TDG  HO6     H11  H  0  1  N  N  N  25.307  -15.612  49.193  -1.992  -3.314  -3.048  GAL  1  HO6   polymer  1  34  
TDG  "H1'"   H12  H  0  1  N  N  N  29.501  -19.035  49.316   1.060  -0.275  -1.173  YIO  2  H1    polymer  1  35  
TDG  "H2'"   H13  H  0  1  N  N  N  32.420  -18.744  50.183   2.862   1.937  -0.086  YIO  2  H2    polymer  1  36  
TDG  "H3'"   H15  H  0  1  N  N  N  31.274  -19.618  47.500   3.483  -0.421  -1.925  YIO  2  H3    polymer  1  37  
TDG  "HO2'"  H14  H  0  0  N  N  N  31.256  -16.798  49.621   1.515   2.537  -1.967  YIO  2  HA    polymer  1  38  
TDG  "H4'"   H17  H  0  1  N  N  N  32.309  -21.762  47.972   4.833  -1.253  -0.039  YIO  2  H4    polymer  1  39  
TDG  "HO3'"  H16  H  0  0  N  N  N  33.257  -18.381  47.424   4.792   1.545  -2.292  YIO  2  HB    polymer  1  40  
TDG  "H5'"   H19  H  0  1  N  N  N  30.043  -21.605  48.720   2.482  -1.981  -0.186  YIO  2  H5    polymer  1  41  
TDG  "HO4'"  H18  H  0  0  N  N  N  33.246  -22.068  50.095   5.246   0.869   0.984  YIO  2  HC    polymer  1  42  
TDG  "H6'1"  H21  H  0  0  N  N  N  31.890  -22.864  50.786   3.238  -1.302   2.691  YIO  2  H61C  polymer  1  43  
TDG  "H6'2"  H20  H  0  0  N  N  N  30.101  -22.999  50.880   3.899  -2.674   1.770  YIO  2  H62C  polymer  1  44  
TDG  "HO6'"  H22  H  0  0  N  N  N  31.073  -24.750  49.699   1.989  -3.305   3.058  YIO  2  HO6   polymer  1  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TDG  "O3'"  "C3'"   SING  N  N   1  
TDG  "C3'"  "C4'"   SING  N  N   2  
TDG  "C3'"  "C2'"   SING  N  N   3  
TDG  "C4'"  "C5'"   SING  N  N   4  
TDG  "C4'"  "O4'"   SING  N  N   5  
TDG  "O2'"  "C2'"   SING  N  N   6  
TDG  "O6'"  "C6'"   SING  N  N   7  
TDG  "C2'"  "C1'"   SING  N  N   8  
TDG  "C5'"  "C6'"   SING  N  N   9  
TDG  "C5'"  "O5'"   SING  N  N  10  
TDG  O6     C6      SING  N  N  11  
TDG  "C1'"  "O5'"   SING  N  N  12  
TDG  "C1'"  S1      SING  N  N  13  
TDG  C6     C5      SING  N  N  14  
TDG  O5     C5      SING  N  N  15  
TDG  O5     C1      SING  N  N  16  
TDG  S1     C1      SING  N  N  17  
TDG  C5     C4      SING  N  N  18  
TDG  C1     C2      SING  N  N  19  
TDG  C4     O4      SING  N  N  20  
TDG  C4     C3      SING  N  N  21  
TDG  C2     O2      SING  N  N  22  
TDG  C2     C3      SING  N  N  23  
TDG  C3     O3      SING  N  N  24  
TDG  C1     H1      SING  N  N  25  
TDG  C2     H2      SING  N  N  26  
TDG  O2     HO2     SING  N  N  27  
TDG  C3     H3      SING  N  N  28  
TDG  O3     HO3     SING  N  N  29  
TDG  C4     H4      SING  N  N  30  
TDG  O4     HO4     SING  N  N  31  
TDG  C5     H5      SING  N  N  32  
TDG  C6     H62     SING  N  N  33  
TDG  C6     H61     SING  N  N  34  
TDG  O6     HO6     SING  N  N  35  
TDG  "C1'"  "H1'"   SING  N  N  36  
TDG  "C2'"  "H2'"   SING  N  N  37  
TDG  "O2'"  "HO2'"  SING  N  N  38  
TDG  "C3'"  "H3'"   SING  N  N  39  
TDG  "O3'"  "HO3'"  SING  N  N  40  
TDG  "C4'"  "H4'"   SING  N  N  41  
TDG  "O4'"  "HO4'"  SING  N  N  42  
TDG  "C5'"  "H5'"   SING  N  N  43  
TDG  "C6'"  "H6'2"  SING  N  N  44  
TDG  "C6'"  "H6'1"  SING  N  N  45  
TDG  "O6'"  "HO6'"  SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TDG  SMILES            ACDLabs               10.04  "O2C(SC1OC(C(O)C(O)C1O)CO)C(O)C(O)C(O)C2CO"  
TDG  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@@H](S[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@H]1O"  
TDG  SMILES            CACTVS                3.341  "OC[CH]1O[CH](S[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O"  
TDG  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)S[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O)O)O)O"  
TDG  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(C(O1)SC2C(C(C(C(O2)CO)O)O)O)O)O)O)O"  
TDG  InChI             InChI                 1.03   "InChI=1S/C12H22O10S/c13-1-3-5(15)7(17)9(19)11(21-3)23-12-10(20)8(18)6(16)4(2-14)22-12/h3-20H,1-2H2/t3-,4-,5+,6+,7+,8+,9-,10-,11+,12+/m1/s1"  
TDG  InChIKey          InChI                 1.03   SYKYBMOFPMXDRQ-ZFDCCPEWSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TDG  "SYSTEMATIC NAME"  ACDLabs               10.04  "beta-D-galactopyranosyl 1-thio-beta-D-galactopyranoside"  
TDG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl-oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TDG  "Create component"    1999-07-08  PDBJ  
TDG  "Modify descriptor"   2011-06-04  RCSB  
TDG  "Other modification"  2020-07-03  RCSB  
TDG  "Obsolete component"  2020-07-17  RCSB  
##
