data_RNG
# 
_chem_comp.id                                    RNG 
_chem_comp.name                                  "(6,10-DIOXO-OCTAHYDRO-PYRIDAZINO[1,2-A][1,2]DIAZEPIN-1-YL)-ACETALDEHYDE FRAGMENT" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H16 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "FUSED RING FRAGMENT OF INHIBITOR" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        240.256 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RNG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3HAT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RNG O   O   O 0 1 N N N N Y Y 17.916 -17.710 24.014 3.637  0.522  0.895  O   RNG 1  
RNG C   C   C 0 1 N N N N Y Y 17.134 -16.920 24.684 3.444  -0.412 0.154  C   RNG 2  
RNG CA  CA  C 0 1 N N N N N N 17.518 -16.708 26.145 2.042  -0.751 -0.282 CA  RNG 3  
RNG CH  CH  C 0 1 N N R N N N 18.753 -15.724 26.308 1.077  0.325  0.220  CH  RNG 4  
RNG CG  CG  C 0 1 N N N N N N 19.756 -16.368 27.325 1.401  1.657  -0.464 CG  RNG 5  
RNG CF  CF  C 0 1 N N N N N N 20.861 -16.961 26.695 0.367  2.703  -0.032 CF  RNG 6  
RNG CE  CE  C 0 1 N N N N N N 21.549 -16.059 25.593 -1.014 2.277  -0.540 CE  RNG 7  
RNG N1  N1  N 0 1 N N N N N N 20.742 -14.814 25.231 -1.333 0.949  -0.053 N1  RNG 8  
RNG C1  C1  C 0 1 N N N N N N ?      ?       ?      -2.465 0.497  0.377  C1  RNG 9  
RNG O1  O1  O 0 1 N N N N N N ?      ?       ?      -3.453 1.160  0.142  O1  RNG 10 
RNG CD  CD  C 0 1 N N N N N N ?      ?       ?      -2.660 -0.774 1.136  CD  RNG 11 
RNG CC  CC  C 0 1 N N N N N N ?      ?       ?      -3.137 -1.880 0.078  CC  RNG 12 
RNG CB  CB  C 0 1 N N N N N N ?      ?       ?      -2.065 -1.446 -1.023 CB  RNG 13 
RNG C2  C2  C 0 1 N N N N N N ?      ?       ?      -0.766 -1.245 -0.319 C2  RNG 14 
RNG O2  O2  O 0 1 N N N N N N ?      ?       ?      -0.139 -2.220 0.040  O2  RNG 15 
RNG N2  N2  N 0 1 N N N N N N 19.488 -15.119 25.007 -0.282 -0.071 -0.079 N2  RNG 16 
RNG HA1 HA1 H 0 1 N N N N N N 16.655 -16.284 26.679 2.000  -0.796 -1.371 HA1 RNG 17 
RNG HA2 HA2 H 0 1 N N N N N N 17.780 -17.681 26.586 1.756  -1.717 0.132  HA2 RNG 18 
RNG HH  HH  H 0 1 N N N N N N 18.345 -14.845 26.829 1.190  0.437  1.299  HH  RNG 19 
RNG HG1 HG1 H 0 1 N N N N N N 20.118 -15.584 28.006 2.397  1.986  -0.170 HG1 RNG 20 
RNG HG2 HG2 H 0 1 N N N N N N 19.225 -17.139 27.903 1.361  1.531  -1.546 HG2 RNG 21 
RNG HF1 HF1 H 0 1 N N N N N N 21.611 -17.195 27.465 0.350  2.771  1.056  HF1 RNG 22 
RNG HF2 HF2 H 0 1 N N N N N N 20.525 -17.892 26.216 0.629  3.672  -0.456 HF2 RNG 23 
RNG HE1 HE1 H 0 1 N N N N N N 22.532 -15.739 25.969 -1.764 2.983  -0.184 HE1 RNG 24 
RNG HE2 HE2 H 0 1 N N N N N N 21.683 -16.663 24.683 -1.013 2.272  -1.630 HE2 RNG 25 
RNG HD1 HD1 H 0 1 N N N N N N ?      ?       ?      -1.720 -1.080 1.597  HD1 RNG 26 
RNG HD2 HD2 H 0 1 N N N N N N ?      ?       ?      -3.424 -0.637 1.902  HD2 RNG 27 
RNG HC1 HC1 H 0 1 N N N N N N ?      ?       ?      -2.975 -2.896 0.438  HC1 RNG 28 
RNG HC2 HC2 H 0 1 N N N N N N ?      ?       ?      -4.163 -1.722 -0.255 HC2 RNG 29 
RNG HB1 HB1 H 0 1 N N N N N N ?      ?       ?      -1.964 -2.231 -1.772 HB1 RNG 30 
RNG HB2 HB2 H 0 1 N N N N N N ?      ?       ?      -2.377 -0.516 -1.498 HB2 RNG 31 
RNG OXT OXT O 0 1 N Y N N Y Y ?      ?       ?      4.479  -1.145 -0.286 O3  RNG 32 
RNG HXT HXT H 0 1 N Y N N Y Y ?      ?       ?      5.360  -0.887 0.018  H1  RNG 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RNG O   C   DOUB N N 1  
RNG C   CA  SING N N 2  
RNG CA  CH  SING N N 3  
RNG CA  HA1 SING N N 4  
RNG CA  HA2 SING N N 5  
RNG CH  CG  SING N N 6  
RNG CH  N2  SING N N 7  
RNG CH  HH  SING N N 8  
RNG CG  CF  SING N N 9  
RNG CG  HG1 SING N N 10 
RNG CG  HG2 SING N N 11 
RNG CF  CE  SING N N 12 
RNG CF  HF1 SING N N 13 
RNG CF  HF2 SING N N 14 
RNG CE  N1  SING N N 15 
RNG CE  HE1 SING N N 16 
RNG CE  HE2 SING N N 17 
RNG N1  C1  SING N N 18 
RNG N1  N2  SING N N 19 
RNG C1  O1  DOUB N N 20 
RNG C1  CD  SING N N 21 
RNG CD  CC  SING N N 22 
RNG CD  HD1 SING N N 23 
RNG CD  HD2 SING N N 24 
RNG CC  CB  SING N N 25 
RNG CC  HC1 SING N N 26 
RNG CC  HC2 SING N N 27 
RNG CB  C2  SING N N 28 
RNG CB  HB1 SING N N 29 
RNG CB  HB2 SING N N 30 
RNG C2  O2  DOUB N N 31 
RNG C2  N2  SING N N 32 
RNG C   OXT SING N N 33 
RNG OXT HXT SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RNG SMILES           ACDLabs              10.04 "O=C1N2N(C(=O)CCC1)C(CCC2)CC=O"                                                                     
RNG InChI            InChI                1.06  "InChI=1S/C11H16N2O4/c14-9-4-1-5-10(15)13-8(7-11(16)17)3-2-6-12(9)13/h8H,1-7H2,(H,16,17)/t8-/m1/s1" 
RNG InChIKey         InChI                1.06  PDRXEYTZAMUQQR-MRVPVSSYSA-N                                                                         
RNG SMILES_CANONICAL CACTVS               3.385 "OC(=O)C[C@H]1CCCN2N1C(=O)CCCC2=O"                                                                  
RNG SMILES           CACTVS               3.385 "OC(=O)C[CH]1CCCN2N1C(=O)CCCC2=O"                                                                   
RNG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1C[C@@H](N2C(=O)CCCC(=O)N2C1)CC(=O)O"                                                             
RNG SMILES           "OpenEye OEToolkits" 2.0.7 "C1CC(N2C(=O)CCCC(=O)N2C1)CC(=O)O"                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RNG "SYSTEMATIC NAME" ACDLabs              10.04 "[(1R)-6,10-dioxooctahydro-6H-pyridazino[1,2-a][1,2]diazepin-1-yl]acetaldehyde"                                    
RNG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(4~{R})-6,10-bis(oxidanylidene)-2,3,4,7,8,9-hexahydro-1~{H}-pyridazino[1,2-a][1,2]diazepin-4-yl]ethanoic acid" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      RNG 
_pdbx_chem_comp_synonyms.name         "FUSED RING FRAGMENT OF INHIBITOR" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RNG "Create component"   1999-07-08 RCSB 
RNG "Modify descriptor"  2011-06-04 RCSB 
RNG "Modify synonyms"    2021-03-01 PDBE 
RNG "Modify backbone"    2023-11-03 PDBE 
RNG "Other modification" 2024-06-28 PDBE 
RNG "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            RNG 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               N-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
