data_OIG
# 
_chem_comp.id                                    OIG 
_chem_comp.name                                  "beta-ethyl-adenosine diphosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H19 N5 O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] ethyl hydrogen phosphate; [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] ethyl hydrogen phosphate; beta-ethyl-ADP" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-07 
_chem_comp.pdbx_modified_date                    2024-03-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        455.254 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OIG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AZO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OIG "C4'"  C1  C 0 1 N N R N N N 20.292 -6.806  -8.228  -0.689 1.885  -0.506 C13 OIG 1  
OIG "C1'"  C2  C 0 1 N N R N N N 21.839 -5.118  -8.196  -2.727 0.790  -0.604 C15 OIG 2  
OIG C8     C3  C 0 1 Y N N N N N 23.062 -4.462  -6.107  -3.035 -1.224 0.885  C17 OIG 3  
OIG C6     C4  C 0 1 Y N N N N N 22.534 -0.925  -6.008  -6.361 -2.360 0.327  C20 OIG 4  
OIG "C2'"  C5  C 0 1 N N R N N N 22.548 -6.615  -8.116  -3.020 2.096  0.177  C26 OIG 5  
OIG "C3'"  C6  C 0 1 N N S N N N 21.700 -7.357  -8.702  -1.745 2.931  -0.099 C28 OIG 6  
OIG C05    C7  C 0 1 N N N N N N 18.451 -10.736 -2.085  6.997  -2.447 -0.945 C05 OIG 7  
OIG C06    C8  C 0 1 N N N N N N 19.261 -11.270 -0.904  6.902  -3.705 -1.810 C06 OIG 8  
OIG "C5'"  C9  C 0 1 N N N N N N 19.747 -7.477  -7.106  0.508  1.959  0.443  C12 OIG 9  
OIG C5     C10 C 0 1 Y N N N N N 22.676 -2.318  -6.150  -5.079 -1.795 0.440  C19 OIG 10 
OIG C2     C11 C 0 1 Y N N N N N 21.317 -0.828  -7.958  -6.898 -0.744 -1.232 C23 OIG 11 
OIG C4     C12 C 0 1 Y N N N N N 22.091 -2.892  -7.258  -4.780 -0.669 -0.345 C25 OIG 12 
OIG N9     N1  N 0 1 Y N N N N N 22.339 -4.207  -7.205  -3.486 -0.329 -0.040 N16 OIG 13 
OIG N7     N2  N 0 1 Y N N N N N 23.270 -3.306  -5.451  -3.971 -2.085 1.162  N18 OIG 14 
OIG N6     N3  N 0 1 N N N N N N 23.143 -0.231  -4.871  -6.711 -3.475 1.068  N21 OIG 15 
OIG N1     N4  N 0 1 Y N N N N N 21.863 -0.227  -6.902  -7.230 -1.798 -0.507 N22 OIG 16 
OIG N3     N5  N 0 1 Y N N N N N 21.419 -2.141  -8.137  -5.712 -0.180 -1.157 N24 OIG 17 
OIG O1B    O1  O 0 1 N N N N N N 19.436 -11.107 -5.791  5.878  -0.653 1.357  O01 OIG 18 
OIG O2B    O2  O 0 1 N N N N N N 17.194 -10.557 -4.740  6.277  0.744  -0.707 O03 OIG 19 
OIG O3B    O3  O 0 1 N N N N N N 19.128 -11.162 -3.219  5.715  -1.819 -0.875 O04 OIG 20 
OIG O3A    O4  O 0 1 N N N N N N 19.071 -8.893  -4.549  3.874  -0.120 -0.080 O07 OIG 21 
OIG O1A    O5  O 0 1 N N N N N N 21.636 -9.133  -4.196  3.591  2.188  0.902  O09 OIG 22 
OIG O2A    O6  O 0 1 N N N N N N 20.465 -6.884  -3.904  2.666  0.248  2.226  O10 OIG 23 
OIG "O5'"  O7  O 0 1 N N N N N N 20.814 -7.905  -6.280  1.523  1.056  -0.000 O11 OIG 24 
OIG "O4'"  O8  O 0 1 N N N N N N 20.580 -5.322  -7.918  -1.310 0.592  -0.412 O14 OIG 25 
OIG "O2'"  O9  O 0 1 N N N N N N 23.894 -6.643  -8.708  -4.181 2.750  -0.340 O27 OIG 26 
OIG "O3'"  O10 O 0 1 N N N N N N 21.751 -7.150  -10.199 -1.973 3.854  -1.167 O29 OIG 27 
OIG PB     P1  P 0 1 N N N N N N 18.699 -10.474 -4.629  5.445  -0.466 -0.045 P02 OIG 28 
OIG PA     P2  P 0 1 N N N N N N 20.544 -8.199  -4.663  2.928  0.872  0.765  P08 OIG 29 
OIG "H4'"  H1  H 0 1 N N N N N N 19.599 -6.859  -9.080  -0.362 2.066  -1.530 H1  OIG 30 
OIG "H1'"  H2  H 0 1 N N N N N N 21.998 -4.721  -9.209  -2.957 0.916  -1.663 H2  OIG 31 
OIG H8     H3  H 0 1 N N N N N N 23.419 -5.434  -5.799  -2.047 -1.221 1.319  H3  OIG 32 
OIG "H2'"  H4  H 0 1 N N N N N N 22.631 -6.862  -7.047  -3.130 1.896  1.242  H4  OIG 33 
OIG "H3'"  H5  H 0 1 N N N N N N 21.778 -8.427  -8.457  -1.433 3.459  0.802  H5  OIG 34 
OIG H6     H6  H 0 1 N N N N N N 18.405 -9.637  -2.054  7.322  -2.720 0.059  H6  OIG 35 
OIG H7     H7  H 0 1 N N N N N N 17.431 -11.147 -2.069  7.717  -1.757 -1.384 H7  OIG 36 
OIG H1     H8  H 0 1 N N N N N N 18.779 -10.968 0.038   6.577  -3.432 -2.814 H8  OIG 37 
OIG H9     H9  H 0 1 N N N N N N 19.306 -12.368 -0.957  7.880  -4.184 -1.863 H9  OIG 38 
OIG H10    H10 H 0 1 N N N N N N 20.280 -10.858 -0.943  6.183  -4.396 -1.370 H10 OIG 39 
OIG "H5'1" H11 H 0 1 N N N N N N 19.094 -6.792  -6.545  0.903  2.974  0.452  H11 OIG 40 
OIG "H5'2" H12 H 0 1 N N N N N N 19.164 -8.348  -7.441  0.191  1.683  1.449  H12 OIG 41 
OIG H2     H13 H 0 1 N N N N N N 20.780 -0.236  -8.684  -7.635 -0.319 -1.898 H13 OIG 42 
OIG HN61   H14 H 0 1 N N N N N N 22.951 0.748   -4.936  -6.069 -3.876 1.673  H14 OIG 43 
OIG HN62   H15 H 0 1 N N N N N N 22.762 -0.590  -4.019  -7.599 -3.856 0.981  H15 OIG 44 
OIG HOB2   H16 H 0 1 N N N N N N 16.960 -11.006 -5.544  6.044  0.923  -1.628 H16 OIG 45 
OIG HOA2   H17 H 0 1 N N N N N N 21.140 -6.863  -3.235  2.233  -0.616 2.212  H17 OIG 46 
OIG "HO2'" H18 H 0 1 N N N N N N 24.468 -6.066  -8.218  -4.404 3.573  0.117  H18 OIG 47 
OIG "HO3'" H19 H 0 1 N N N N N N 22.581 -7.466  -10.535 -2.630 4.535  -0.965 H19 OIG 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OIG "O3'" "C3'"  SING N N 1  
OIG "O2'" "C2'"  SING N N 2  
OIG "C3'" "C4'"  SING N N 3  
OIG "C3'" "C2'"  SING N N 4  
OIG "C4'" "O4'"  SING N N 5  
OIG "C4'" "C5'"  SING N N 6  
OIG "C1'" "C2'"  SING N N 7  
OIG "C1'" "O4'"  SING N N 8  
OIG "C1'" N9     SING N N 9  
OIG N3    C2     DOUB Y N 10 
OIG N3    C4     SING Y N 11 
OIG C2    N1     SING Y N 12 
OIG C4    N9     SING Y N 13 
OIG C4    C5     DOUB Y N 14 
OIG N9    C8     SING Y N 15 
OIG "C5'" "O5'"  SING N N 16 
OIG N1    C6     DOUB Y N 17 
OIG "O5'" PA     SING N N 18 
OIG C5    C6     SING Y N 19 
OIG C5    N7     SING Y N 20 
OIG C8    N7     DOUB Y N 21 
OIG C6    N6     SING N N 22 
OIG O1B   PB     DOUB N N 23 
OIG O2B   PB     SING N N 24 
OIG PA    O3A    SING N N 25 
OIG PA    O1A    DOUB N N 26 
OIG PA    O2A    SING N N 27 
OIG PB    O3A    SING N N 28 
OIG PB    O3B    SING N N 29 
OIG O3B   C05    SING N N 30 
OIG C05   C06    SING N N 31 
OIG "C4'" "H4'"  SING N N 32 
OIG "C1'" "H1'"  SING N N 33 
OIG C8    H8     SING N N 34 
OIG "C2'" "H2'"  SING N N 35 
OIG "C3'" "H3'"  SING N N 36 
OIG C05   H6     SING N N 37 
OIG C05   H7     SING N N 38 
OIG C06   H1     SING N N 39 
OIG C06   H9     SING N N 40 
OIG C06   H10    SING N N 41 
OIG "C5'" "H5'1" SING N N 42 
OIG "C5'" "H5'2" SING N N 43 
OIG C2    H2     SING N N 44 
OIG N6    HN61   SING N N 45 
OIG N6    HN62   SING N N 46 
OIG O2B   HOB2   SING N N 47 
OIG O2A   HOA2   SING N N 48 
OIG "O2'" "HO2'" SING N N 49 
OIG "O3'" "HO3'" SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OIG InChI            InChI                1.06    "InChI=1S/C12H19N5O10P2/c1-2-24-28(20,21)27-29(22,23)25-3-6-8(18)9(19)12(26-6)17-5-16-7-10(13)14-4-15-11(7)17/h4-6,8-9,12,18-19H,2-3H2,1H3,(H,20,21)(H,22,23)(H2,13,14,15)/t6-,8-,9-,12-/m1/s1" 
OIG InChIKey         InChI                1.06    OBBAXRNSCNGYQO-WOUKDFQISA-N                                                                                                                                                                     
OIG SMILES_CANONICAL CACTVS               3.385   "CCO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                                                      
OIG SMILES           CACTVS               3.385   "CCO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"                                                                                                                           
OIG SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCOP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"                                                                                                                         
OIG SMILES           "OpenEye OEToolkits" 3.1.0.0 "CCOP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O"                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           OIG 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] ethyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 OIG "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] ethyl hydrogen phosphate" PDB     ? 
2 OIG "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] ethyl hydrogen phosphate"                   PUBCHEM ? 
3 OIG beta-ethyl-ADP                                                                                                                         AUTHOR  ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OIG "Create component" 2022-09-08 PDBE 
OIG "Initial release"  2024-03-20 RCSB 
# 
