data_NVG
# 
_chem_comp.id                                    NVG 
_chem_comp.name                                  "4-AMINO-1-(5-{[3-(1H-BENZIMIDAZOL-2-YL)PROPANOYL]AMINO}-5-DEOXY-ALPHA-L-LYXOFURANOSYL)PYRIMIDIN-2(1H)-ONE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H22 N6 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2007-06-07 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        414.415 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NVG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        "Corina V3.40" 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NVG OAC  OAC  O 0 1 N N N 12.944 -9.971  14.961 -4.160 0.892  -1.788 OAC  NVG 1  
NVG CAV  CAV  C 0 1 N N N 13.041 -9.037  15.762 -4.585 1.419  -0.773 CAV  NVG 2  
NVG NAO  NAO  N 0 1 N N N 12.319 -7.914  15.550 -5.208 2.593  -0.856 NAO  NVG 3  
NVG CAT  CAT  C 0 1 N N N 12.373 -6.865  16.391 -5.680 3.188  0.232  CAT  NVG 4  
NVG NAA  NAA  N 0 1 N N N 11.648 -5.777  16.153 -6.322 4.400  0.134  NAA  NVG 5  
NVG CAF  CAF  C 0 1 N N N 13.190 -6.897  17.522 -5.521 2.569  1.489  CAF  NVG 6  
NVG CAG  CAG  C 0 1 N N N 13.954 -8.027  17.784 -4.886 1.375  1.557  CAG  NVG 7  
NVG NBD  NBD  N 0 1 N N N 13.896 -9.124  16.900 -4.422 0.801  0.412  NBD  NVG 8  
NVG CBC  CBC  C 0 1 N N R 14.718 -10.360 17.183 -3.738 -0.493 0.470  CBC  NVG 9  
NVG OAS  OAS  O 0 1 N N N 15.246 -10.416 18.560 -2.454 -0.408 -0.169 OAS  NVG 10 
NVG CBA  CBA  C 0 1 N N R 15.951 -10.487 16.258 -4.524 -1.554 -0.340 CBA  NVG 11 
NVG OAE  OAE  O 0 1 N N N 15.989 -11.801 15.674 -5.532 -2.172 0.463  OAE  NVG 12 
NVG CAZ  CAZ  C 0 1 N N S 17.161 -10.283 17.168 -3.391 -2.558 -0.687 CAZ  NVG 13 
NVG OAD  OAD  O 0 1 N N N 17.818 -11.539 17.298 -3.179 -3.477 0.387  OAD  NVG 14 
NVG CBB  CBB  C 0 1 N N S 16.561 -9.801  18.516 -2.171 -1.628 -0.863 CBB  NVG 15 
NVG CAN  CAN  C 0 1 N N N 17.302 -10.092 19.864 -0.926 -2.287 -0.266 CAN  NVG 16 
NVG NAQ  NAQ  N 0 1 N N N 18.231 -11.230 19.737 0.224  -1.395 -0.428 NAQ  NVG 17 
NVG CAU  CAU  C 0 1 N N N 19.541 -11.141 19.982 1.437  -1.769 0.025  CAU  NVG 18 
NVG OAB  OAB  O 0 1 N N N 20.112 -10.110 20.337 1.576  -2.845 0.567  OAB  NVG 19 
NVG CAL  CAL  C 0 1 N N N 20.339 -12.442 19.789 2.620  -0.850 -0.142 CAL  NVG 20 
NVG CAM  CAM  C 0 1 N N N 19.505 -13.707 20.045 3.865  -1.509 0.455  CAM  NVG 21 
NVG CAW  CAW  C 0 1 Y N N 19.126 -13.843 21.522 5.049  -0.591 0.288  CAW  NVG 22 
NVG NAR  NAR  N 0 1 Y N N 18.290 -13.043 22.184 5.851  -0.162 1.299  NAR  NVG 23 
NVG CAY  CAY  C 0 1 Y N N 18.206 -13.468 23.438 6.813  0.656  0.742  CAY  NVG 24 
NVG CAK  CAK  C 0 1 Y N N 17.491 -13.009 24.543 7.886  1.374  1.252  CAK  NVG 25 
NVG CAI  CAI  C 0 1 Y N N 17.605 -13.678 25.761 8.678  2.116  0.402  CAI  NVG 26 
NVG CAH  CAH  C 0 1 Y N N 18.430 -14.799 25.870 8.409  2.149  -0.960 CAH  NVG 27 
NVG CAJ  CAJ  C 0 1 Y N N 19.146 -15.254 24.763 7.358  1.449  -1.480 CAJ  NVG 28 
NVG CAX  CAX  C 0 1 Y N N 19.030 -14.583 23.547 6.542  0.690  -0.637 CAX  NVG 29 
NVG NAP  NAP  N 0 1 Y N N 19.576 -14.784 22.352 5.455  -0.097 -0.845 NAP  NVG 30 
NVG HAA1 1HAA H 0 0 N N N 11.466 -5.302  17.014 -6.431 4.823  -0.732 HAA1 NVG 31 
NVG HAA2 2HAA H 0 0 N N N 12.151 -5.170  15.538 -6.667 4.833  0.932  HAA2 NVG 32 
NVG HAF  HAF  H 0 1 N N N 13.228 -6.049  18.189 -5.900 3.040  2.384  HAF  NVG 33 
NVG HAG  HAG  H 0 1 N N N 14.587 -8.065  18.658 -4.751 0.882  2.508  HAG  NVG 34 
NVG HBC  HBC  H 0 1 N N N 14.002 -11.177 17.010 -3.624 -0.813 1.506  HBC  NVG 35 
NVG HBA  HBA  H 0 1 N N N 15.929 -9.758  15.435 -4.955 -1.120 -1.242 HBA  NVG 36 
NVG HBB  HBB  H 0 1 N N N 16.615 -8.703  18.489 -2.012 -1.424 -1.921 HBB  NVG 37 
NVG HAE  HAE  H 0 1 N N N 15.997 -11.727 14.727 -6.049 -2.844 -0.003 HAE  NVG 38 
NVG HAZ  HAZ  H 0 1 N N N 17.898 -9.558  16.794 -3.614 -3.090 -1.612 HAZ  NVG 39 
NVG HAD  HAD  H 0 1 N N N 17.964 -11.911 16.436 -3.949 -4.024 0.594  HAD  NVG 40 
NVG HAN1 1HAN H 0 0 N N N 17.874 -9.198  20.154 -1.089 -2.481 0.794  HAN1 NVG 41 
NVG HAN2 2HAN H 0 0 N N N 16.549 -10.344 20.625 -0.731 -3.228 -0.781 HAN2 NVG 42 
NVG HAQ  HAQ  H 0 1 N N N 17.861 -12.114 19.453 0.113  -0.534 -0.862 HAQ  NVG 43 
NVG HAL1 1HAL H 0 0 N N N 20.702 -12.473 18.751 2.783  -0.657 -1.202 HAL1 NVG 44 
NVG HAL2 2HAL H 0 0 N N N 21.160 -12.436 20.521 2.425  0.091  0.373  HAL2 NVG 45 
NVG HAM1 1HAM H 0 0 N N N 18.584 -13.650 19.447 3.702  -1.702 1.515  HAM1 NVG 46 
NVG HAM2 2HAM H 0 0 N N N 20.109 -14.582 19.762 4.060  -2.450 -0.060 HAM2 NVG 47 
NVG HAR  HAR  H 0 1 N N N 17.808 -12.256 21.800 5.764  -0.389 2.238  HAR  NVG 48 
NVG HAK  HAK  H 0 1 N N N 16.853 -12.142 24.456 8.099  1.352  2.311  HAK  NVG 49 
NVG HAI  HAI  H 0 1 N N N 17.054 -13.328 26.622 9.512  2.675  0.798  HAI  NVG 50 
NVG HAH  HAH  H 0 1 N N N 18.514 -15.316 26.815 9.038  2.734  -1.614 HAH  NVG 51 
NVG HAJ  HAJ  H 0 1 N N N 19.786 -16.120 24.847 7.158  1.482  -2.540 HAJ  NVG 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NVG OAC CAV  DOUB N N 1  
NVG CAV NAO  SING N N 2  
NVG CAV NBD  SING N N 3  
NVG NAO CAT  DOUB N N 4  
NVG CAT NAA  SING N N 5  
NVG CAT CAF  SING N N 6  
NVG NAA HAA1 SING N N 7  
NVG NAA HAA2 SING N N 8  
NVG CAF CAG  DOUB N N 9  
NVG CAF HAF  SING N N 10 
NVG CAG NBD  SING N N 11 
NVG CAG HAG  SING N N 12 
NVG NBD CBC  SING N N 13 
NVG CBC OAS  SING N N 14 
NVG CBC CBA  SING N N 15 
NVG CBC HBC  SING N N 16 
NVG OAS CBB  SING N N 17 
NVG CBA OAE  SING N N 18 
NVG CBA CAZ  SING N N 19 
NVG CBA HBA  SING N N 20 
NVG OAE HAE  SING N N 21 
NVG CAZ OAD  SING N N 22 
NVG CAZ CBB  SING N N 23 
NVG CAZ HAZ  SING N N 24 
NVG OAD HAD  SING N N 25 
NVG CBB CAN  SING N N 26 
NVG CBB HBB  SING N N 27 
NVG CAN NAQ  SING N N 28 
NVG CAN HAN1 SING N N 29 
NVG CAN HAN2 SING N N 30 
NVG NAQ CAU  SING N N 31 
NVG NAQ HAQ  SING N N 32 
NVG CAU OAB  DOUB N N 33 
NVG CAU CAL  SING N N 34 
NVG CAL CAM  SING N N 35 
NVG CAL HAL1 SING N N 36 
NVG CAL HAL2 SING N N 37 
NVG CAM CAW  SING N N 38 
NVG CAM HAM1 SING N N 39 
NVG CAM HAM2 SING N N 40 
NVG CAW NAR  SING Y N 41 
NVG CAW NAP  DOUB Y N 42 
NVG NAR CAY  SING Y N 43 
NVG NAR HAR  SING N N 44 
NVG CAY CAK  SING Y N 45 
NVG CAY CAX  DOUB Y N 46 
NVG CAK CAI  DOUB Y N 47 
NVG CAK HAK  SING N N 48 
NVG CAI CAH  SING Y N 49 
NVG CAI HAI  SING N N 50 
NVG CAH CAJ  DOUB Y N 51 
NVG CAH HAH  SING N N 52 
NVG CAJ CAX  SING Y N 53 
NVG CAJ HAJ  SING N N 54 
NVG CAX NAP  SING Y N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NVG SMILES           ACDLabs              10.04 "O=C1N=C(N)C=CN1C2OC(C(O)C2O)CNC(=O)CCc3nc4ccccc4n3"                                                                                                                                                        
NVG SMILES_CANONICAL CACTVS               3.341 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@@H](CNC(=O)CCc3[nH]c4ccccc4n3)[C@@H](O)[C@H]2O"                                                                                                                                
NVG SMILES           CACTVS               3.341 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CNC(=O)CCc3[nH]c4ccccc4n3)[CH](O)[CH]2O"                                                                                                                                       
NVG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)[nH]c(n2)CCC(=O)NC[C@H]3[C@H]([C@H]([C@@H](O3)N4C=CC(=NC4=O)N)O)O"                                                                                                                              
NVG SMILES           "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)[nH]c(n2)CCC(=O)NCC3C(C(C(O3)N4C=CC(=NC4=O)N)O)O"                                                                                                                                               
NVG InChI            InChI                1.03  "InChI=1S/C19H22N6O5/c20-13-7-8-25(19(29)24-13)18-17(28)16(27)12(30-18)9-21-15(26)6-5-14-22-10-3-1-2-4-11(10)23-14/h1-4,7-8,12,16-18,27-28H,5-6,9H2,(H,21,26)(H,22,23)(H2,20,24,29)/t12-,16+,17+,18+/m0/s1" 
NVG InChIKey         InChI                1.03  IHRYIMVLMZNCKA-FCRVUTKVSA-N                                                                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NVG "SYSTEMATIC NAME" ACDLabs              10.04 "4-amino-1-(5-{[3-(1H-benzimidazol-2-yl)propanoyl]amino}-5-deoxy-alpha-L-lyxofuranosyl)pyrimidin-2(1H)-one"                
NVG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[[(2S,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-3-(1H-benzimidazol-2-yl)propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NVG "Create component"  2007-06-07 RCSB 
NVG "Modify descriptor" 2011-06-04 RCSB 
# 
