data_G8G
# 
_chem_comp.id                                    G8G 
_chem_comp.name                                  "(3Z)-4-{[(4-amino-2-methylpyrimidin-5-yl)methyl](formyl)amino}-3-sulfanylpent-3-en-1-yl trihydrogen diphosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H20 N4 O8 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-05-14 
_chem_comp.pdbx_modified_date                    2018-09-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        442.322 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G8G 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6DEL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G8G S01 S1  S 0 1 N N N 246.761 238.049 45.136 -1.465 2.524  -1.558 S01 G8G 1  
G8G C02 C1  C 0 1 N N N 247.590 237.088 43.879 -1.050 0.989  -0.799 C02 G8G 2  
G8G C03 C2  C 0 1 N N N 249.039 237.587 43.759 0.231  0.287  -1.170 C03 G8G 3  
G8G C04 C3  C 0 1 N N N 249.248 238.990 44.274 1.368  0.798  -0.284 C04 G8G 4  
G8G O05 O1  O 0 1 N N N 250.456 239.518 43.703 2.583  0.132  -0.637 O05 G8G 5  
G8G P06 P1  P 0 1 N N N 250.914 241.018 44.107 3.987  0.425  0.094  P06 G8G 6  
G8G O07 O2  O 0 1 N N N 250.523 241.330 45.610 5.104  -0.591 -0.464 O07 G8G 7  
G8G P08 P2  P 0 1 N N N 251.295 240.999 46.942 6.527  -1.104 0.090  P08 G8G 8  
G8G O09 O3  O 0 1 N N N 252.702 240.507 46.670 6.403  -1.446 1.525  O09 G8G 9  
G8G O10 O4  O 0 1 N N N 250.527 239.961 47.727 6.985  -2.408 -0.735 O10 G8G 10 
G8G O11 O5  O 0 1 N N N 251.368 242.337 47.774 7.624  0.060  -0.092 O11 G8G 11 
G8G O12 O6  O 0 1 N N N 250.173 241.983 43.236 3.833  0.235  1.554  O12 G8G 12 
G8G O13 O7  O 0 1 N N N 252.357 241.159 43.879 4.442  1.940  -0.205 O13 G8G 13 
G8G C14 C4  C 0 1 N N N 247.020 236.067 43.126 -1.864 0.452  0.100  C14 G8G 14 
G8G C15 C5  C 0 1 N N N 247.809 235.271 42.045 -1.463 -0.808 0.822  C15 G8G 15 
G8G N16 N1  N 0 1 N N N 245.667 235.573 43.218 -3.097 1.055  0.376  N16 G8G 16 
G8G C17 C6  C 0 1 N N N 244.890 235.612 44.501 -3.321 1.607  1.585  C17 G8G 17 
G8G O18 O8  O 0 1 N N N 244.044 236.497 44.709 -2.425 1.665  2.401  O18 G8G 18 
G8G C19 C7  C 0 1 N N N 245.018 234.958 42.085 -4.144 1.087  -0.648 C19 G8G 19 
G8G C20 C8  C 0 1 Y N N 244.559 235.914 40.970 -5.052 -0.104 -0.476 C20 G8G 20 
G8G C21 C9  C 0 1 Y N N 243.761 237.101 41.200 -6.110 -0.071 0.435  C21 G8G 21 
G8G N22 N2  N 0 1 N N N 243.343 237.510 42.538 -6.346 1.061  1.199  N22 G8G 22 
G8G N23 N3  N 0 1 Y N N 243.399 237.869 40.127 -6.888 -1.142 0.557  N23 G8G 23 
G8G C24 C10 C 0 1 Y N N 243.759 237.527 38.907 -6.666 -2.220 -0.168 C24 G8G 24 
G8G C25 C11 C 0 1 N N N 243.341 238.389 37.735 -7.570 -3.414 -0.001 C25 G8G 25 
G8G N26 N4  N 0 1 Y N N 244.490 236.431 38.650 -5.677 -2.282 -1.036 N26 G8G 26 
G8G C27 C12 C 0 1 Y N N 244.904 235.605 39.651 -4.862 -1.252 -1.218 C27 G8G 27 
G8G H1  H1  H 0 1 N N N 247.705 238.852 45.529 -2.654 2.823  -1.006 H1  G8G 28 
G8G H2  H2  H 0 1 N N N 249.688 236.908 44.332 0.112  -0.787 -1.025 H2  G8G 29 
G8G H3  H3  H 0 1 N N N 249.327 237.561 42.698 0.465  0.488  -2.215 H3  G8G 30 
G8G H4  H4  H 0 1 N N N 249.334 238.972 45.370 1.488  1.872  -0.430 H4  G8G 31 
G8G H5  H5  H 0 1 N N N 248.395 239.621 43.984 1.134  0.597  0.761  H5  G8G 32 
G8G H6  H6  H 0 1 N N N 251.085 239.210 47.890 7.836  -2.772 -0.454 H6  G8G 33 
G8G H7  H7  H 0 1 N N N 252.277 242.561 47.935 7.758  0.335  -1.009 H7  G8G 34 
G8G H8  H8  H 0 1 N N N 252.511 241.833 43.227 4.563  2.136  -1.144 H8  G8G 35 
G8G H9  H9  H 0 1 N N N 248.838 235.656 41.984 -1.734 -1.675 0.220  H9  G8G 36 
G8G H10 H10 H 0 1 N N N 247.832 234.206 42.318 -0.386 -0.804 0.989  H10 G8G 37 
G8G H11 H11 H 0 1 N N N 247.315 235.389 41.069 -1.979 -0.857 1.781  H11 G8G 38 
G8G H12 H12 H 0 1 N N N 245.069 234.859 45.255 -4.298 1.998  1.828  H12 G8G 39 
G8G H13 H13 H 0 1 N N N 244.131 234.422 42.455 -4.724 2.004  -0.547 H13 G8G 40 
G8G H14 H14 H 0 1 N N N 245.723 234.239 41.643 -3.686 1.054  -1.637 H14 G8G 41 
G8G H15 H15 H 0 1 N N N 242.812 238.355 42.478 -5.846 1.875  1.028  H15 G8G 42 
G8G H16 H16 H 0 1 N N N 242.780 236.791 42.945 -7.010 1.039  1.906  H16 G8G 43 
G8G H17 H17 H 0 1 N N N 243.727 237.952 36.802 -8.408 -3.335 -0.694 H17 G8G 44 
G8G H18 H18 H 0 1 N N N 242.243 238.439 37.690 -7.010 -4.325 -0.210 H18 G8G 45 
G8G H19 H19 H 0 1 N N N 243.749 239.403 37.862 -7.946 -3.444 1.022  H19 G8G 46 
G8G H20 H20 H 0 1 N N N 245.490 234.725 39.429 -4.054 -1.314 -1.933 H20 G8G 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G8G C25 C24 SING N N 1  
G8G N26 C24 DOUB Y N 2  
G8G N26 C27 SING Y N 3  
G8G C24 N23 SING Y N 4  
G8G C27 C20 DOUB Y N 5  
G8G N23 C21 DOUB Y N 6  
G8G C20 C21 SING Y N 7  
G8G C20 C19 SING N N 8  
G8G C21 N22 SING N N 9  
G8G C15 C14 SING N N 10 
G8G C19 N16 SING N N 11 
G8G C14 N16 SING N N 12 
G8G C14 C02 DOUB N Z 13 
G8G N16 C17 SING N N 14 
G8G O12 P06 DOUB N N 15 
G8G O05 P06 SING N N 16 
G8G O05 C04 SING N N 17 
G8G C03 C02 SING N N 18 
G8G C03 C04 SING N N 19 
G8G O13 P06 SING N N 20 
G8G C02 S01 SING N N 21 
G8G P06 O07 SING N N 22 
G8G C17 O18 DOUB N N 23 
G8G O07 P08 SING N N 24 
G8G O09 P08 DOUB N N 25 
G8G P08 O10 SING N N 26 
G8G P08 O11 SING N N 27 
G8G S01 H1  SING N N 28 
G8G C03 H2  SING N N 29 
G8G C03 H3  SING N N 30 
G8G C04 H4  SING N N 31 
G8G C04 H5  SING N N 32 
G8G O10 H6  SING N N 33 
G8G O11 H7  SING N N 34 
G8G O13 H8  SING N N 35 
G8G C15 H9  SING N N 36 
G8G C15 H10 SING N N 37 
G8G C15 H11 SING N N 38 
G8G C17 H12 SING N N 39 
G8G C19 H13 SING N N 40 
G8G C19 H14 SING N N 41 
G8G N22 H15 SING N N 42 
G8G N22 H16 SING N N 43 
G8G C25 H17 SING N N 44 
G8G C25 H18 SING N N 45 
G8G C25 H19 SING N N 46 
G8G C27 H20 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G8G SMILES           ACDLabs              12.01 "S/C(CCOP(OP(O)(O)=O)(=O)O)=C(\N(C=O)Cc1c(N)nc(C)nc1)C"                                                                                                                
G8G InChI            InChI                1.03  "InChI=1S/C12H20N4O8P2S/c1-8(11(27)3-4-23-26(21,22)24-25(18,19)20)16(7-17)6-10-5-14-9(2)15-12(10)13/h5,7,27H,3-4,6H2,1-2H3,(H,21,22)(H2,13,14,15)(H2,18,19,20)/b11-8-" 
G8G InChIKey         InChI                1.03  ODQNREFTECDKDB-FLIBITNWSA-N                                                                                                                                            
G8G SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(CN(C=O)C(/C)=C(\S)CCO[P](O)(=O)O[P](O)(O)=O)c(N)n1"                                                                                                            
G8G SMILES           CACTVS               3.385 "Cc1ncc(CN(C=O)C(C)=C(S)CCO[P](O)(=O)O[P](O)(O)=O)c(N)n1"                                                                                                              
G8G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ncc(c(n1)N)CN(C=O)/C(=C(/CCOP(=O)(O)OP(=O)(O)O)\S)/C"                                                                                                              
G8G SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1ncc(c(n1)N)CN(C=O)C(=C(CCOP(=O)(O)OP(=O)(O)O)S)C"                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
G8G "SYSTEMATIC NAME" ACDLabs              12.01 "(3Z)-4-{[(4-amino-2-methylpyrimidin-5-yl)methyl](formyl)amino}-3-sulfanylpent-3-en-1-yl trihydrogen diphosphate"           
G8G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(~{Z})-4-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl-methanoyl-amino]-3-sulfanyl-pent-3-enyl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G8G "Create component" 2018-05-14 RCSB 
G8G "Initial release"  2018-09-26 RCSB 
# 
