data_EFG
#

_chem_comp.id                                   EFG
_chem_comp.name                                 "1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-1H-imidazo[2,1-b]purin-4(5H)-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H13 F N5 O7 P"
_chem_comp.mon_nstd_parent_comp_id              DG
_chem_comp.pdbx_synonyms                        "2'-F-N2,3-etheno-2'-deoxyarabinoguanosine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-01-04
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       389.233
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    EFG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3V6H
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EFG  O6      O6      O  0  1  N  N  N  7.755   9.881  45.807  -5.076  -2.915   0.579  O6      EFG   1  
EFG  C6      C6      C  0  1  N  N  N  7.183   9.797  46.897  -4.581  -1.868   0.201  C6      EFG   2  
EFG  N1      N1      N  0  1  N  N  N  6.992  10.965  47.618  -5.345  -0.918  -0.376  N1      EFG   3  
EFG  C2      C2      C  0  1  Y  N  N  6.348  10.882  48.838  -4.788   0.272  -0.807  C2      EFG   4  
EFG  N2      N2      N  0  1  Y  N  N  6.018  11.796  49.741  -5.335   1.319  -1.387  N2      EFG   5  
EFG  C10     C10     C  0  1  Y  N  N  5.412  11.183  50.745  -4.391   2.243  -1.622  C10     EFG   6  
EFG  C9      C9      C  0  1  Y  N  N  5.363   9.876  50.447  -3.213   1.769  -1.179  C9      EFG   7  
EFG  N3      N3      N  0  1  Y  N  N  5.936   9.694  49.260  -3.455   0.518  -0.660  N3      EFG   8  
EFG  C4      C4      C  0  1  Y  N  N  6.112   8.559  48.578  -2.623  -0.416  -0.077  C4      EFG   9  
EFG  C5      C5      C  0  1  Y  N  N  6.739   8.620  47.392  -3.148  -1.618   0.372  C5      EFG  10  
EFG  N7      N7      N  0  1  Y  N  N  6.802   7.384  46.913  -2.126  -2.335   0.901  N7      EFG  11  
EFG  C8      C8      C  0  1  Y  N  N  6.229   6.573  47.796  -1.027  -1.644   0.804  C8      EFG  12  
EFG  N9      N9      N  0  1  Y  N  N  5.785   7.292  48.823  -1.290  -0.452   0.197  N9      EFG  13  
EFG  "C1'"   "C1'"   C  0  1  N  N  R  5.126   6.756  50.057  -0.318   0.605  -0.093  "C1'"   EFG  14  
EFG  "O4'"   "O4'"   O  0  1  N  N  N  6.154   5.912  50.674   1.013   0.051  -0.188  "O4'"   EFG  15  
EFG  "C2'"   "C2'"   C  0  1  N  N  S  3.870   5.910  49.882  -0.246   1.607   1.080  "C2'"   EFG  16  
EFG  F       F       F  0  1  N  N  N  3.564   5.580  48.563  -0.662   0.999   2.270  F       EFG  17  
EFG  "C3'"   "C3'"   C  0  1  N  N  R  4.167   4.565  50.496   1.250   1.985   1.160  "C3'"   EFG  18  
EFG  "O3'"   "O3'"   O  0  1  N  N  N  3.575   4.510  51.766   1.425   3.385   0.933  "O3'"   EFG  19  
EFG  "C4'"   "C4'"   C  0  1  N  N  R  5.698   4.518  50.700   1.905   1.167   0.024  "C4'"   EFG  20  
EFG  "C5'"   "C5'"   C  0  1  N  N  N  6.357   3.621  49.635   3.286   0.670   0.455  "C5'"   EFG  21  
EFG  "O5'"   "O5'"   O  0  1  N  N  N  5.529   3.562  48.463   3.891  -0.047  -0.623  "O5'"   EFG  22  
EFG  P       P       P  0  1  N  N  N  5.872   2.560  47.282   5.354  -0.713  -0.521  P       EFG  23  
EFG  OP1     OP1     O  0  1  N  N  N  5.873   1.192  47.858   6.338   0.317  -0.119  OP1     EFG  24  
EFG  OP2     OP2     O  0  1  N  N  N  5.070   2.836  46.077   5.332  -1.891   0.576  OP2     EFG  25  
EFG  H1      H1      H  0  1  N  N  N  7.312  11.844  47.265  -6.296  -1.071  -0.491  H1      EFG  26  
EFG  H9      H9      H  0  1  N  N  N  5.027  11.649  51.640  -4.551   3.205  -2.088  H9      EFG  27  
EFG  H10     H10     H  0  1  N  N  N  4.932   9.103  51.065  -2.260   2.274  -1.223  H10     EFG  28  
EFG  H8      H8      H  0  1  N  N  N  6.138   5.501  47.696  -0.055  -1.969   1.145  H8      EFG  29  
EFG  "H1'"   "H1'"   H  0  1  N  N  N  4.892   7.595  50.729  -0.582   1.118  -1.018  "H1'"   EFG  30  
EFG  "H2'"   "H2'"   H  0  1  N  N  N  3.021   6.385  50.396  -0.852   2.487   0.868  "H2'"   EFG  31  
EFG  "H3'"   "H3'"   H  0  1  N  N  N  3.839   3.747  49.837   1.666   1.699   2.126  "H3'"   EFG  32  
EFG  "HO3'"  "HO3'"  H  0  0  N  N  N  3.755   3.666  52.164   0.982   3.947   1.583  "HO3'"  EFG  33  
EFG  "H4'"   "H4'"   H  0  1  N  N  N  5.902   4.087  51.691   1.982   1.769  -0.881  "H4'"   EFG  34  
EFG  "H5'"   "H5'"   H  0  1  N  N  N  6.486   2.607  50.042   3.912   1.521   0.722  "H5'"   EFG  35  
EFG  "H5''"  "H5''"  H  0  0  N  N  N  7.340   4.036  49.366   3.183   0.011   1.317  "H5''"  EFG  36  
EFG  OP3     OP3     O  0  1  N  Y  N      ?       ?       ?   5.767  -1.322  -1.953  OP3     EFG  37  
EFG  HOP3    HOP3    H  0  0  N  Y  N      ?       ?       ?   6.639  -1.740  -1.966  HOP3    EFG  38  
EFG  HOP2    HOP2    H  0  0  N  N  N  4.624   2.043  45.804   4.708  -2.603   0.377  HOP2    EFG  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EFG  O6     C6      DOUB  N  N   1  
EFG  OP2    P       SING  N  N   2  
EFG  C6     C5      SING  N  N   3  
EFG  C6     N1      SING  N  N   4  
EFG  N7     C5      SING  Y  N   5  
EFG  N7     C8      DOUB  Y  N   6  
EFG  P      OP1     DOUB  N  N   7  
EFG  P      "O5'"   SING  N  N   8  
EFG  C5     C4      DOUB  Y  N   9  
EFG  N1     C2      SING  N  N  10  
EFG  C8     N9      SING  Y  N  11  
EFG  "O5'"  "C5'"   SING  N  N  12  
EFG  F      "C2'"   SING  N  N  13  
EFG  C4     N9      SING  Y  N  14  
EFG  C4     N3      SING  N  N  15  
EFG  N9     "C1'"   SING  N  N  16  
EFG  C2     N3      SING  Y  N  17  
EFG  C2     N2      DOUB  Y  N  18  
EFG  N3     C9      SING  Y  N  19  
EFG  "C5'"  "C4'"   SING  N  N  20  
EFG  N2     C10     SING  Y  N  21  
EFG  "C2'"  "C1'"   SING  N  N  22  
EFG  "C2'"  "C3'"   SING  N  N  23  
EFG  "C1'"  "O4'"   SING  N  N  24  
EFG  C9     C10     DOUB  Y  N  25  
EFG  "C3'"  "C4'"   SING  N  N  26  
EFG  "C3'"  "O3'"   SING  N  N  27  
EFG  "O4'"  "C4'"   SING  N  N  28  
EFG  N1     H1      SING  N  N  29  
EFG  C10    H9      SING  N  N  30  
EFG  C9     H10     SING  N  N  31  
EFG  C8     H8      SING  N  N  32  
EFG  "C1'"  "H1'"   SING  N  N  33  
EFG  "C2'"  "H2'"   SING  N  N  34  
EFG  "C3'"  "H3'"   SING  N  N  35  
EFG  "O3'"  "HO3'"  SING  N  N  36  
EFG  "C4'"  "H4'"   SING  N  N  37  
EFG  "C5'"  "H5'"   SING  N  N  38  
EFG  "C5'"  "H5''"  SING  N  N  39  
EFG  P      OP3     SING  N  N  40  
EFG  OP3    HOP3    SING  N  N  41  
EFG  OP2    HOP2    SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EFG  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC4OC(n1cnc3c1n2ccnc2NC3=O)C(F)C4O"  
EFG  InChI             InChI                 1.03   "InChI=1S/C12H13FN5O7P/c13-6-8(19)5(3-24-26(21,22)23)25-11(6)18-4-15-7-9(20)16-12-14-1-2-17(12)10(7)18/h1-2,4-6,8,11,19H,3H2,(H,14,16,20)(H2,21,22,23)/t5-,6+,8-,11-/m1/s1"  
EFG  InChIKey          InChI                 1.03   CNUAFEDIAQGGKR-WCGPTHBMSA-N  
EFG  SMILES_CANONICAL  CACTVS                3.370  "O[C@H]1[C@H](F)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3C(=O)Nc4nccn4c23"  
EFG  SMILES            CACTVS                3.370  "O[CH]1[CH](F)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)Nc4nccn4c23"  
EFG  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1cn-2c(n1)NC(=O)c3c2n(cn3)[C@H]4[C@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)F"  
EFG  SMILES            "OpenEye OEToolkits"  1.7.6  "c1cn-2c(n1)NC(=O)c3c2n(cn3)C4C(C(C(O4)COP(=O)(O)O)O)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EFG  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-1H-imidazo[2,1-b]purin-4(5H)-one"  
EFG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[(2R,3R,4S,5R)-4-fluoranyl-3-oxidanyl-5-(4-oxidanylidene-5H-imidazo[2,1-b]purin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EFG  "Create component"  2012-01-04  RCSB  
EFG  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     EFG
_pdbx_chem_comp_synonyms.name        "2'-F-N2,3-etheno-2'-deoxyarabinoguanosine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
