data_E5G
#

_chem_comp.id                                   E5G
_chem_comp.name                                 "5-hydroxypentyl alpha-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H22 O7"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        "5-hydroxypentyl alpha-D-glucoside; 5-hydroxypentyl D-glucoside; 5-hydroxypentyl glucoside"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-01-11
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       266.288
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    E5G
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3VMP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  E5G  "5-hydroxypentyl alpha-D-glucoside"  PDB  ?  
2  E5G  "5-hydroxypentyl D-glucoside"        PDB  ?  
3  E5G  "5-hydroxypentyl glucoside"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
E5G  O6   O6   O  0  1  N  N  N   5.528  -13.764   0.125   0.964  -3.427   0.627  O6   E5G   1  
E5G  C6   C6   C  0  1  N  N  N   4.663  -12.630  -0.077   2.139  -2.739   0.193  C6   E5G   2  
E5G  C5   C5   C  0  1  N  N  R   5.414  -11.505  -0.807   1.822  -1.253   0.014  C5   E5G   3  
E5G  O5   O5   O  0  1  N  N  N   5.937  -11.935  -2.079   1.495  -0.679   1.281  O5   E5G   4  
E5G  C4   C4   C  0  1  N  N  S   4.524  -10.283  -1.027   3.044  -0.538  -0.568  C4   E5G   5  
E5G  O4   O4   O  0  1  N  N  N   4.049   -9.881   0.272   3.339  -1.071  -1.861  O4   E5G   6  
E5G  C3   C3   C  0  1  N  N  S   5.350   -9.193  -1.713   2.741   0.959  -0.689  C3   E5G   7  
E5G  O3   O3   O  0  1  N  N  N   4.581   -8.059  -2.085   3.900   1.645  -1.165  O3   E5G   8  
E5G  C2   C2   C  0  1  N  N  R   6.126   -9.661  -2.952   2.351   1.503   0.689  C2   E5G   9  
E5G  O2   O2   O  0  1  N  N  N   7.093   -8.644  -3.317   1.996   2.882   0.575  O2   E5G  10  
E5G  C1   C1   C  0  1  N  N  S   6.828  -11.007  -2.717   1.156   0.708   1.223  C1   E5G  11  
E5G  O1   O1   O  0  1  N  N  N   8.038  -10.806  -1.959   0.036   0.890   0.353  O1   E5G  12  
E5G  C15  C15  C  0  1  N  N  N   8.810  -12.001  -1.785  -1.192   0.378   0.872  C15  E5G  13  
E5G  C14  C14  C  0  1  N  N  N  10.164  -11.636  -1.189  -2.315   0.626  -0.137  C14  E5G  14  
E5G  C13  C13  C  0  1  N  N  N  10.579  -10.220  -1.569  -3.631   0.078   0.420  C13  E5G  15  
E5G  C12  C12  C  0  1  N  N  N  11.844   -9.797  -0.822  -4.754   0.326  -0.590  C12  E5G  16  
E5G  C11  C11  C  0  1  N  N  N  13.141  -10.285  -1.476  -6.070  -0.221  -0.033  C11  E5G  17  
E5G  O11  O11  O  0  1  N  N  N  14.178   -9.327  -1.216  -7.119   0.010  -0.976  O11  E5G  18  
E5G  HO6  H1   H  0  1  N  Y  N   5.051  -14.450   0.577   1.091  -4.376   0.762  HO6  E5G  19  
E5G  H61  H2   H  0  1  N  N  N   4.317  -12.260   0.899   2.924  -2.855   0.940  H61  E5G  20  
E5G  H62  H3   H  0  1  N  N  N   3.797  -12.938  -0.681   2.474  -3.156  -0.756  H62  E5G  21  
E5G  H5   H4   H  0  1  N  N  N   6.253  -11.196  -0.166   0.977  -1.140  -0.666  H5   E5G  22  
E5G  H4   H5   H  0  1  N  N  N   3.680  -10.561  -1.676   3.900  -0.685   0.090  H4   E5G  23  
E5G  HO4  H6   H  0  1  N  Y  N   3.544  -10.587   0.657   4.103  -0.663  -2.290  HO4  E5G  24  
E5G  H3   H7   H  0  1  N  N  N   6.102   -8.864  -0.981   1.917   1.109  -1.387  H3   E5G  25  
E5G  HO3  H8   H  0  1  N  Y  N   4.090   -7.749  -1.334   3.779   2.599  -1.265  HO3  E5G  26  
E5G  H2   H9   H  0  1  N  N  N   5.408   -9.790  -3.776   3.193   1.398   1.373  H2   E5G  27  
E5G  HO2  H10  H  0  1  N  Y  N   6.646   -7.818  -3.459   1.732   3.290   1.411  HO2  E5G  28  
E5G  H1   H11  H  0  1  N  N  N   7.100  -11.409  -3.704   0.901   1.062   2.221  H1   E5G  29  
E5G  H12  H12  H  0  1  N  N  N   8.281  -12.686  -1.106  -1.094  -0.692   1.051  H12  E5G  30  
E5G  H13  H13  H  0  1  N  N  N   8.956  -12.491  -2.759  -1.429   0.883   1.809  H13  E5G  31  
E5G  H14  H14  H  0  1  N  N  N  10.103  -11.709  -0.093  -2.414   1.697  -0.316  H14  E5G  32  
E5G  H15  H15  H  0  1  N  N  N  10.921  -12.342  -1.562  -2.079   0.121  -1.074  H15  E5G  33  
E5G  H16  H16  H  0  1  N  N  N  10.771  -10.180  -2.651  -3.533  -0.992   0.598  H16  E5G  34  
E5G  H17  H17  H  0  1  N  N  N   9.764   -9.527  -1.316  -3.867   0.583   1.357  H17  E5G  35  
E5G  H18  H18  H  0  1  N  N  N  11.870   -8.698  -0.778  -4.853   1.397  -0.768  H18  E5G  36  
E5G  H19  H19  H  0  1  N  N  N  11.796  -10.204   0.199  -4.518  -0.178  -1.527  H19  E5G  37  
E5G  H20  H20  H  0  1  N  N  N  12.993  -10.385  -2.561  -5.971  -1.292   0.145  H20  E5G  38  
E5G  H21  H21  H  0  1  N  N  N  13.424  -11.260  -1.053  -6.306   0.283   0.904  H21  E5G  39  
E5G  H22  H22  H  0  1  N  N  N  14.988   -9.620  -1.617  -7.984  -0.312  -0.689  H22  E5G  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
E5G  O2   C2   SING  N  N   1  
E5G  C2   C1   SING  N  N   2  
E5G  C2   C3   SING  N  N   3  
E5G  C1   O5   SING  N  N   4  
E5G  C1   O1   SING  N  N   5  
E5G  O3   C3   SING  N  N   6  
E5G  O5   C5   SING  N  N   7  
E5G  O1   C15  SING  N  N   8  
E5G  C15  C14  SING  N  N   9  
E5G  C3   C4   SING  N  N  10  
E5G  C13  C14  SING  N  N  11  
E5G  C13  C12  SING  N  N  12  
E5G  C11  O11  SING  N  N  13  
E5G  C11  C12  SING  N  N  14  
E5G  C4   C5   SING  N  N  15  
E5G  C4   O4   SING  N  N  16  
E5G  C5   C6   SING  N  N  17  
E5G  C6   O6   SING  N  N  18  
E5G  O6   HO6  SING  N  N  19  
E5G  C6   H61  SING  N  N  20  
E5G  C6   H62  SING  N  N  21  
E5G  C5   H5   SING  N  N  22  
E5G  C4   H4   SING  N  N  23  
E5G  O4   HO4  SING  N  N  24  
E5G  C3   H3   SING  N  N  25  
E5G  O3   HO3  SING  N  N  26  
E5G  C2   H2   SING  N  N  27  
E5G  O2   HO2  SING  N  N  28  
E5G  C1   H1   SING  N  N  29  
E5G  C15  H12  SING  N  N  30  
E5G  C15  H13  SING  N  N  31  
E5G  C14  H14  SING  N  N  32  
E5G  C14  H15  SING  N  N  33  
E5G  C13  H16  SING  N  N  34  
E5G  C13  H17  SING  N  N  35  
E5G  C12  H18  SING  N  N  36  
E5G  C12  H19  SING  N  N  37  
E5G  C11  H20  SING  N  N  38  
E5G  C11  H21  SING  N  N  39  
E5G  O11  H22  SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
E5G  SMILES            ACDLabs               12.01  "O(CCCCCO)C1OC(C(O)C(O)C1O)CO"  
E5G  InChI             InChI                 1.03   "InChI=1S/C11H22O7/c12-4-2-1-3-5-17-11-10(16)9(15)8(14)7(6-13)18-11/h7-16H,1-6H2/t7-,8-,9+,10-,11+/m1/s1"  
E5G  InChIKey          InChI                 1.03   TUXAGTBBQDBLQC-NZFPMDFQSA-N  
E5G  SMILES_CANONICAL  CACTVS                3.370  "OCCCCCO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O"  
E5G  SMILES            CACTVS                3.370  "OCCCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O"  
E5G  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C(CCO)CCO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O"  
E5G  SMILES            "OpenEye OEToolkits"  1.7.6  "C(CCO)CCOC1C(C(C(C(O1)CO)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
E5G  "SYSTEMATIC NAME"            ACDLabs               12.01  "5-hydroxypentyl alpha-D-glucopyranoside"  
E5G  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.7.6  "(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-(5-oxidanylpentoxy)oxane-3,4,5-triol"  
E5G  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    5-hydroxypentyl-a-D-glucopyranoside  
#
_pdbx_chem_comp_related.comp_id            E5G
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  E5G  C1   GLC  C1   "Carbohydrate core"  
 2  E5G  C2   GLC  C2   "Carbohydrate core"  
 3  E5G  C3   GLC  C3   "Carbohydrate core"  
 4  E5G  C4   GLC  C4   "Carbohydrate core"  
 5  E5G  C5   GLC  C5   "Carbohydrate core"  
 6  E5G  C6   GLC  C6   "Carbohydrate core"  
 7  E5G  O1   GLC  O1   "Carbohydrate core"  
 8  E5G  O2   GLC  O2   "Carbohydrate core"  
 9  E5G  O3   GLC  O3   "Carbohydrate core"  
10  E5G  O4   GLC  O4   "Carbohydrate core"  
11  E5G  O5   GLC  O5   "Carbohydrate core"  
12  E5G  O6   GLC  O6   "Carbohydrate core"  
13  E5G  HO6  GLC  HO6  "Carbohydrate core"  
14  E5G  HO2  GLC  HO2  "Carbohydrate core"  
15  E5G  H1   GLC  H1   "Carbohydrate core"  
16  E5G  H61  GLC  H61  "Carbohydrate core"  
17  E5G  H62  GLC  H62  "Carbohydrate core"  
18  E5G  H5   GLC  H5   "Carbohydrate core"  
19  E5G  H4   GLC  H4   "Carbohydrate core"  
20  E5G  HO4  GLC  HO4  "Carbohydrate core"  
21  E5G  H3   GLC  H3   "Carbohydrate core"  
22  E5G  HO3  GLC  HO3  "Carbohydrate core"  
23  E5G  H2   GLC  H2   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
E5G  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
E5G  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
E5G  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
E5G  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
E5G  "Create component"          2012-01-11  PDBJ  
E5G  "Other modification"        2020-07-03  RCSB  
E5G  "Modify parent residue"     2020-07-17  RCSB  
E5G  "Modify synonyms"           2020-07-17  RCSB  
E5G  "Modify linking type"       2020-07-17  RCSB  
E5G  "Modify atom id"            2020-07-17  RCSB  
E5G  "Modify component atom id"  2020-07-17  RCSB  
E5G  "Modify leaving atom flag"  2020-07-17  RCSB  
##
