data_D6G
#

_chem_comp.id                                   D6G
_chem_comp.name                                 2-deoxy-6-O-phosphono-alpha-D-glucopyranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H13 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;2-deoxy-6-O-phosphono-alpha-D-arabino-hexopyranose; 2-deoxy-alpha-D-glucopyranose 6-phosphate;
2-deoxy-6-O-phosphono-alpha-D-glucose; 2-deoxy-6-O-phosphono-D-glucose; 2-deoxy-6-O-phosphono-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       244.136
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D6G
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2PRI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  D6G  2-deoxy-6-O-phosphono-alpha-D-arabino-hexopyranose    PDB  ?  
2  D6G  "2-deoxy-alpha-D-glucopyranose 6-phosphate"           PDB  ?  
3  D6G  2-deoxy-6-O-phosphono-alpha-D-glucose                 PDB  ?  
4  D6G  2-deoxy-6-O-phosphono-D-glucose                       PDB  ?  
5  D6G  2-deoxy-6-O-phosphono-glucose                         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D6G  C1    C1    C  0  1  N  N  S  25.061  5.570  50.742  -2.254   1.809  -0.307  C1    D6G   1  
D6G  C2    C2    C  0  1  N  N  N  23.800  4.646  50.974  -3.414   0.874  -0.660  C2    D6G   2  
D6G  C3    C3    C  0  1  N  N  R  24.026  3.641  52.139  -3.273  -0.426   0.138  C3    D6G   3  
D6G  C4    C4    C  0  1  N  N  S  25.343  2.839  51.949  -1.909  -1.053  -0.165  C4    D6G   4  
D6G  C5    C5    C  0  1  N  N  R  26.573  3.837  51.701  -0.807  -0.044   0.169  C5    D6G   5  
D6G  C6    C6    C  0  1  N  N  N  27.814  3.088  51.298   0.556  -0.640  -0.188  C6    D6G   6  
D6G  O1    O1    O  0  1  N  Y  N  25.254  6.561  51.757  -2.316   2.143   1.081  O1    D6G   7  
D6G  O3    O3    O  0  1  N  N  N  22.959  2.713  52.273  -4.311  -1.333  -0.240  O3    D6G   8  
D6G  O4    O4    O  0  1  N  N  N  25.540  2.055  53.129  -1.737  -2.228   0.628  O4    D6G   9  
D6G  O5    O5    O  0  1  N  N  N  26.269  4.748  50.616  -1.015   1.153  -0.584  O5    D6G  10  
D6G  O6    O6    O  0  1  N  N  N  28.946  3.911  51.413   1.591   0.252   0.230  O6    D6G  11  
D6G  P     P     P  0  1  N  N  N  30.489  3.382  51.326   3.156  -0.057   0.013  P     D6G  12  
D6G  O1P   O1P   O  0  1  N  N  N  30.651  2.433  52.485   3.488  -1.368   0.614  O1P   D6G  13  
D6G  O2P   O2P   O  0  1  N  N  N  31.409  4.545  51.503   3.483  -0.091  -1.563  O2P   D6G  14  
D6G  O3P   O3P   O  0  1  N  N  N  30.551  2.805  49.909   4.033   1.094   0.719  O3P   D6G  15  
D6G  H1    H1    H  0  1  N  N  N  24.901  6.084  49.783  -2.325   2.718  -0.903  H1    D6G  16  
D6G  H2    H21   H  0  1  N  N  N  22.934  5.280  51.214  -4.359   1.356  -0.408  H2    D6G  17  
D6G  H22   H22   H  0  1  N  N  N  23.598  4.082  50.052  -3.391   0.652  -1.727  H22   D6G  18  
D6G  H3    H3    H  0  1  N  N  N  24.121  4.223  53.067  -3.346  -0.209   1.204  H3    D6G  19  
D6G  H4    H4    H  0  1  N  N  N  25.241  2.191  51.066  -1.855  -1.314  -1.222  H4    D6G  20  
D6G  H5    H5    H  0  1  N  N  N  26.762  4.394  52.630  -0.835   0.187   1.234  H5    D6G  21  
D6G  H61   H61   H  0  1  N  N  N  27.936  2.212  51.952   0.677  -1.599   0.317  H61   D6G  22  
D6G  H62   H62   H  0  1  N  N  N  27.713  2.756  50.254   0.617  -0.788  -1.266  H62   D6G  23  
D6G  HO1   HO1   H  0  1  N  Y  N  26.025  7.077  51.554  -1.610   2.734   1.376  HO1   D6G  24  
D6G  HO3   HO3   H  0  1  N  Y  N  23.141  2.122  52.994  -5.204  -0.997  -0.081  HO3   D6G  25  
D6G  HO4   HO4   H  0  1  N  Y  N  26.341  1.550  53.045  -2.404  -2.910   0.472  HO4   D6G  26  
D6G  HOP2  HOP2  H  0  0  N  N  N  31.901  4.440  52.309   3.289   0.738  -2.023  HOP2  D6G  27  
D6G  HOP3  HOP3  H  0  0  N  N  N  30.692  1.867  49.955   4.988   0.972   0.628  HOP3  D6G  28  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D6G  C1   C2    SING  N  N   1  
D6G  C1   O1    SING  N  N   2  
D6G  C1   O5    SING  N  N   3  
D6G  C1   H1    SING  N  N   4  
D6G  C2   C3    SING  N  N   5  
D6G  C2   H2    SING  N  N   6  
D6G  C2   H22   SING  N  N   7  
D6G  C3   C4    SING  N  N   8  
D6G  C3   O3    SING  N  N   9  
D6G  C3   H3    SING  N  N  10  
D6G  C4   C5    SING  N  N  11  
D6G  C4   O4    SING  N  N  12  
D6G  C4   H4    SING  N  N  13  
D6G  C5   C6    SING  N  N  14  
D6G  C5   O5    SING  N  N  15  
D6G  C5   H5    SING  N  N  16  
D6G  C6   O6    SING  N  N  17  
D6G  C6   H61   SING  N  N  18  
D6G  C6   H62   SING  N  N  19  
D6G  O1   HO1   SING  N  N  20  
D6G  O3   HO3   SING  N  N  21  
D6G  O4   HO4   SING  N  N  22  
D6G  O6   P     SING  N  N  23  
D6G  P    O1P   DOUB  N  N  24  
D6G  P    O2P   SING  N  N  25  
D6G  P    O3P   SING  N  N  26  
D6G  O2P  HOP2  SING  N  N  27  
D6G  O3P  HOP3  SING  N  N  28  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D6G  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC1OC(O)CC(O)C1O"  
D6G  InChI             InChI                 1.03   "InChI=1S/C6H13O8P/c7-3-1-5(8)14-4(6(3)9)2-13-15(10,11)12/h3-9H,1-2H2,(H2,10,11,12)/t3-,4-,5+,6+/m1/s1"  
D6G  InChIKey          InChI                 1.03   UQJFZAAGZAYVKZ-ZXXMMSQZSA-N  
D6G  SMILES_CANONICAL  CACTVS                3.370  "O[C@@H]1C[C@@H](O)[C@H](O)[C@@H](CO[P](O)(O)=O)O1"  
D6G  SMILES            CACTVS                3.370  "O[CH]1C[CH](O)[CH](O)[CH](CO[P](O)(O)=O)O1"  
D6G  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@H]([C@@H]([C@H](O[C@@H]1O)COP(=O)(O)O)O)O"  
D6G  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C(C(C(OC1O)COP(=O)(O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D6G  "SYSTEMATIC NAME"            ACDLabs               12.01  2-deoxy-6-O-phosphono-alpha-D-arabino-hexopyranose  
D6G  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.7.6  "[(2R,3S,4R,6S)-3,4,6-tris(oxidanyl)oxan-2-yl]methyl dihydrogen phosphate"  
D6G  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    a-D-2-deoxy-Glcp6PO3  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
D6G  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
D6G  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
D6G  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
D6G  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D6G  "Create component"          1999-07-08  EBI   
D6G  "Modify descriptor"         2011-06-04  RCSB  
D6G  "Modify name"               2012-08-20  RCSB  
D6G  "Other modification"        2020-07-03  RCSB  
D6G  "Modify name"               2020-07-17  RCSB  
D6G  "Modify synonyms"           2020-07-17  RCSB  
D6G  "Modify linking type"       2020-07-17  RCSB  
D6G  "Modify atom id"            2020-07-17  RCSB  
D6G  "Modify component atom id"  2020-07-17  RCSB  
D6G  "Modify leaving atom flag"  2020-07-17  RCSB  
##
