data_C6G
# 
_chem_comp.id                                    C6G 
_chem_comp.name                                  "6-(carboxymethoxy)-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purin-2-amine" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C12 H16 N5 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               DG 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-04-28 
_chem_comp.pdbx_modified_date                    2012-06-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        405.257 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C6G 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ENN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C6G P      P      P 0 1 N N N 14.105 18.873 -25.273 -5.935 -1.422 0.413  P      C6G 1  
C6G OP1    O1P    O 0 1 N N N 13.954 20.266 -25.963 -7.074 -0.853 -0.342 O1P    C6G 2  
C6G OP2    O2P    O 0 1 N N N 15.577 18.537 -24.899 -5.406 -2.747 -0.332 O2P    C6G 3  
C6G "O5'"  "O5'"  O 0 1 N N N 13.079 18.830 -24.082 -4.747 -0.338 0.490  "O5'"  C6G 4  
C6G "C5'"  "C5'"  C 0 1 N N N 12.715 20.137 -23.768 -4.177 0.275  -0.668 "C5'"  C6G 5  
C6G "C4'"  "C4'"  C 0 1 N N R 12.112 20.489 -22.540 -3.078 1.250  -0.241 "C4'"  C6G 6  
C6G "O4'"  "O4'"  O 0 1 N N N 12.993 21.489 -21.991 -1.968 0.538  0.346  "O4'"  C6G 7  
C6G "C1'"  "C1'"  C 0 1 N N R 12.478 22.748 -22.325 -0.820 1.397  0.250  "C1'"  C6G 8  
C6G N9     N9     N 0 1 Y N N 13.572 23.518 -22.828 0.387  0.595  0.040  N9     C6G 9  
C6G C8     C8     C 0 1 Y N N 14.662 23.042 -23.447 0.440  -0.659 -0.496 C8     C6G 10 
C6G N7     N7     N 0 1 Y N N 15.531 24.054 -23.621 1.673  -1.072 -0.541 N7     C6G 11 
C6G C5     C5     C 0 1 Y N N 14.991 25.174 -23.084 2.489  -0.113 -0.037 C5     C6G 12 
C6G C4     C4     C 0 1 Y N N 13.748 24.816 -22.569 1.673  0.968  0.342  C4     C6G 13 
C6G N3     N3     N 0 1 Y N N 13.004 25.747 -21.980 2.235  2.050  0.867  N3     C6G 14 
C6G C2     C2     C 0 1 Y N N 13.459 26.997 -21.888 3.546  2.112  1.038  C2     C6G 15 
C6G N2     N2     N 0 1 N N N 12.668 27.976 -21.235 4.096  3.257  1.588  N2     C6G 16 
C6G N1     N1     N 0 1 Y N N 14.638 27.391 -22.361 4.351  1.112  0.699  N1     C6G 17 
C6G C6     C6     C 0 1 Y N N 15.423 26.498 -22.963 3.874  -0.002 0.162  C6     C6G 18 
C6G O6     O6     O 0 1 N N N 16.647 26.899 -23.444 4.705  -1.014 -0.185 O6     C6G 19 
C6G "C2'"  "C2'"  C 0 1 N N N 11.289 22.575 -23.177 -1.047 2.332  -0.953 "C2'"  C6G 20 
C6G "C3'"  "C3'"  C 0 1 N N S 10.867 21.224 -22.811 -2.450 1.941  -1.478 "C3'"  C6G 21 
C6G "O3'"  "O3'"  O 0 1 N N N 10.150 21.308 -21.651 -3.198 3.102  -1.847 "O3'"  C6G 22 
C6G C      C      C 0 1 N N N 18.020 28.765 -24.212 6.862  -2.039 -0.393 C      C6G 23 
C6G O      O      O 0 1 N N N 17.615 29.629 -25.059 6.271  -2.981 -0.865 O      C6G 24 
C6G O7     O7     O 0 1 N N N 19.244 28.674 -24.071 8.198  -2.081 -0.265 O7     C6G 25 
C6G CH3    CH3    C 0 1 N N N 17.042 28.206 -23.203 6.100  -0.818 0.052  CH3    C6G 26 
C6G HOP2   HOP2   H 0 0 N N N 16.142 19.254 -25.161 -4.658 -3.174 0.108  HOP2   C6G 27 
C6G "H5'"  "H5'"  H 0 1 N N N 13.636 20.734 -23.837 -3.751 -0.492 -1.314 "H5'"  C6G 28 
C6G "H5''" "H5''" H 0 0 N N N 12.013 20.454 -24.553 -4.952 0.817  -1.211 "H5''" C6G 29 
C6G "H4'"  "H4'"  H 0 1 N N N 11.958 19.634 -21.865 -3.472 1.989  0.457  "H4'"  C6G 30 
C6G "H1'"  "H1'"  H 0 1 N N N 12.138 23.228 -21.396 -0.720 1.985  1.163  "H1'"  C6G 31 
C6G H8     H8     H 0 1 N N N 14.816 22.018 -23.754 -0.415 -1.225 -0.834 H8     C6G 32 
C6G H21    H21    H 0 1 N N N 13.152 28.851 -21.236 3.523  3.997  1.842  H21    C6G 33 
C6G H22    H22    H 0 1 N N N 11.797 28.076 -21.716 5.055  3.319  1.721  H22    C6G 34 
C6G "H2'"  "H2'"  H 0 1 N N N 11.546 22.641 -24.245 -1.036 3.375  -0.635 "H2'"  C6G 35 
C6G "H2''" "H2''" H 0 0 N N N 10.513 23.317 -22.940 -0.292 2.158  -1.720 "H2''" C6G 36 
C6G "H3'"  "H3'"  H 0 1 N N N 10.300 20.751 -23.627 -2.374 1.247  -2.314 "H3'"  C6G 37 
C6G "HO3'" "HO3'" H 0 0 N N N 9.864  20.440 -21.392 -2.796 3.619  -2.559 "HO3'" C6G 38 
C6G HO7    HO7    H 0 1 N N N 19.676 29.294 -24.647 8.643  -2.886 -0.564 HO7    C6G 39 
C6G H31    H31    H 0 1 N N N 17.514 28.244 -22.210 6.445  0.050  -0.509 H31    C6G 40 
C6G H32    H32    H 0 1 N N N 16.144 28.842 -23.207 6.268  -0.653 1.117  H32    C6G 41 
C6G OP3    O3P    O 0 1 N Y N ?      ?      ?       -6.414 -1.799 1.903  O3P    C6G 42 
C6G HOP3   H1     H 0 0 N Y N ?      ?      ?       -7.129 -2.449 1.934  H1     C6G 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C6G OP1   P      DOUB N N 1  
C6G P     OP2    SING N N 2  
C6G P     "O5'"  SING N N 3  
C6G O     C      DOUB N N 4  
C6G C     O7     SING N N 5  
C6G C     CH3    SING N N 6  
C6G "O5'" "C5'"  SING N N 7  
C6G "C5'" "C4'"  SING N N 8  
C6G N7    C8     DOUB Y N 9  
C6G N7    C5     SING Y N 10 
C6G C8    N9     SING Y N 11 
C6G O6    CH3    SING N N 12 
C6G O6    C6     SING N N 13 
C6G "C2'" "C3'"  SING N N 14 
C6G "C2'" "C1'"  SING N N 15 
C6G C5    C6     DOUB Y N 16 
C6G C5    C4     SING Y N 17 
C6G C6    N1     SING Y N 18 
C6G N9    C4     SING Y N 19 
C6G N9    "C1'"  SING N N 20 
C6G "C3'" "C4'"  SING N N 21 
C6G "C3'" "O3'"  SING N N 22 
C6G C4    N3     DOUB Y N 23 
C6G "C4'" "O4'"  SING N N 24 
C6G N1    C2     DOUB Y N 25 
C6G "C1'" "O4'"  SING N N 26 
C6G N3    C2     SING Y N 27 
C6G C2    N2     SING N N 28 
C6G OP2   HOP2   SING N N 29 
C6G "C5'" "H5'"  SING N N 30 
C6G "C5'" "H5''" SING N N 31 
C6G "C4'" "H4'"  SING N N 32 
C6G "C1'" "H1'"  SING N N 33 
C6G C8    H8     SING N N 34 
C6G N2    H21    SING N N 35 
C6G N2    H22    SING N N 36 
C6G "C2'" "H2'"  SING N N 37 
C6G "C2'" "H2''" SING N N 38 
C6G "C3'" "H3'"  SING N N 39 
C6G "O3'" "HO3'" SING N N 40 
C6G O7    HO7    SING N N 41 
C6G CH3   H31    SING N N 42 
C6G CH3   H32    SING N N 43 
C6G P     OP3    SING N N 44 
C6G OP3   HOP3   SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C6G SMILES           ACDLabs              12.01 "O=C(O)COc3nc(nc1c3ncn1C2OC(C(O)C2)COP(=O)(O)O)N"                                                                                                                          
C6G InChI            InChI                1.03  "InChI=1S/C12H16N5O9P/c13-12-15-10-9(11(16-12)24-3-8(19)20)14-4-17(10)7-1-5(18)6(26-7)2-25-27(21,22)23/h4-7,18H,1-3H2,(H,19,20)(H2,13,15,16)(H2,21,22,23)/t5-,6+,7+/m0/s1" 
C6G InChIKey         InChI                1.03  HZVGFAJHLDXTMX-RRKCRQDMSA-N                                                                                                                                                
C6G SMILES_CANONICAL CACTVS               3.370 "Nc1nc(OCC(O)=O)c2ncn([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c2n1"                                                                                                         
C6G SMILES           CACTVS               3.370 "Nc1nc(OCC(O)=O)c2ncn([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c2n1"                                                                                                             
C6G SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)nc(nc2OCC(=O)O)N"                                                                                                           
C6G SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)O)O)nc(nc2OCC(=O)O)N"                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
C6G "SYSTEMATIC NAME" ACDLabs              12.01 "6-(carboxymethoxy)-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purin-2-amine"        
C6G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[2-azanyl-9-[(2R,4S,5R)-4-oxidanyl-5-(phosphonooxymethyl)oxolan-2-yl]purin-6-yl]oxyethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C6G "Create component" 2012-04-28 RCSB 
# 
